RNA id: XM_036985270.1


Basic Information

Item Value
RNA id XM_036985270.1
length 4676
RNA type mRNA
GC content 0.49
exon number 14
gene id LOC110529225
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 30263585 ~ 30292341 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATCCAGGATTCGTTTTGCAATTCGGATTATATTCCTAGATCAACACTGGTAcactgagacgctttatgaatacgggGCCCTGGACGTTCCGCATCCTGACGTAGCCTATGAAGAAACCTAGGCCATTGAACGGTTGATTAAATACACGTGTCACTGAGAGATGAGAGCGGATTACCCTCATAGAAAATACAGTGGAAATACTTCTGAAGCTGTGTTTGGGCagacagatacagtgcaggtgcCGTTGACTGACCCTACCTAGAATCATCAATTGCTTCCTTTTTCGGTCCCACTTTAAACGAAGTACAACTTGTAAAAGCTTTATATAGTATACGTAGACGCTTCTTAAGCACTACATACATGCTTCACAAATAATGTATAAATGGTGTATACGCGTACATAGTGCATTACGTCGCATTTGGCAATTCACCCTAAAGTGGGAATGGTTATGCCACCCTTTATAAACCATTTATAGTATTACATACTCTTAAATAGGATTTGTGATGCAgttatgtagtgtttatgaagcctttatataTCCTATGTAAAGCCTTTAGAAATTGACGGCTACTTCATTTAAAGTGTGACCCCTTTTTCATTGACTTCATGCACACTGCCACGTGATATTACAATATAATTCCACTAATCATATGTGATCGTGAGGTGCACAGTCTATTCTCCGTAACTCCACTAATTCTGACCAAAGTCTTCTTATTGTAATATTTAGCCGTTATGTATGTGTCGTTCTGAAAGTAACCTAGTGCATTGTTTGGGGAATAGAATGTCAAGGTATTTCAGGCTGTTGACAGGTGAACACTTTGGCGCATGACCATTTAAATGGTCAACTGTGGCGCTGTGGATTTGCCTAGGAGATGCCCAAACACCATGCGCAGTTACACCACAATGATGTGAGCTGACCCAACTCGCCACAGACCCGCTAAGTACGATCATGAGAGAGCAGGCCGAAGAATAAAGACGTTAAAGCTACGCATCTTGGAAATGTTATGTACGCAATAGAACACGACATTTCAGAACCATCGCATGTTAAGGGATTACGGGATTACTTCTTCTGTAAAGACTTGGAAGCGGACCTGCTGCCCCACTGAAGACAGATAAGATCCGTTCCCGACTGAAGTGCTATGGCCCCTGCTGCAGTGAGGAGTCCTAGCCTCAGGCCTTCATAGTGGACATTGAGCTACCATCACACACGGGTATAGGCCAGGGCCAGACTCCCGGAGCAGGGATGATCACTTCCCACAGGAACGGAGGACCCGGATATGTAATAGAGGACCCAATGGGGCCTGTGAGTGGCACAGAGGGTCTTGGGAGTGAAGCCAAGCTGCAGCAGAGGGAGAGGGCTGTGGACTGCCCCCCTGGGGACAAGGTGGTGGGGACTGGGAGCAGCGTTGTGCAGGGTTCCCGGTGCAGCGCCCAGATGGAGAGGATCCAGCGGTACCAGGAAGagctgaggaggaagagggaggagaacgCCAACAAAGCGAAGCATGAGATCGATCTCAACGCCTCACTCAGGCTCAAGAAGCTTGCCCAGAACCCAGCCAAGACGGGTATCGACAACCCTACGTTCGAAGCGCCTAAGGCGGGCAAGGAGACCAAGGATGGGAGCCCCCCGCTTGGCGGGGACACGGTTGAGGagCTGGAGGAGCTGCTGGAGGCTCTGCGGCGGGTGCAGAGCTGCCTGGTGGACGCCCAGTCGCAGGCCGACGTGGCTCTGGTGCTGGGCCTGCTGCACAAGGAGGACTTCCAGAGCGCCTTCGCCGTCCACAGCGCCGTGGCCCAGCAGATGCAGCCGCGTGGCAGCCCGCCCTTGCCCCTCACCGCCAAGGCCCGCAGCCTTTATCAGGAGGTGCAATGCATCCTACAATCCAGTCACCAGGAGGAAGGTGTAGAGCTCAGGAGCCTACTCACCACCCCCCACTTCCAGGCTCTGATGCAGGCCCATGACAGTGTGGCGGAGCAGGAGTTGGAGCCGGACCCAGAAGAGAGACTGATTCAGTACCTGGGTGAGACCGTCAAACTGGTGCGGCTGGAGAAGGCCAGCGACATTCCTCTGGGCGCCACGGTTCGTAACGAAATGGACAGCGTGGTGGTGAGTCGTGTGGTAAAGGGCGGGACAGCCGAGCGGAGCGGTCTCCTGGCTGAGGGAGATGAGATCCTGGAGATCAACGGCGTGCCTGTCCGCGGGAAGAACGTCAACGAGGTCCACGACCTTCTGgtgGAAATGCATGGCACTCTGACCTTCCTCCTTATCCCCAGTTCTCAGAACAAAACACCCTCACACAGGCAGACTGTGATGCACGTGAGGGCCTACTTTAACTACGACCCGTCTGATGACCCGTACGTGCCGTGCAGGGAGCTGGGCCTGTCTTTTCAGAAGGGAGACATCCTCCACATCATCAGCCAGGATGACCCCAGCTGGTGGCAGGCCTACAGGGACGGGGATGAGGACAACCAGCCCCTAGCCGGGCTAGTTCCAGggAAGAGCTTCCAGCAGCAGAGAGAAGCTATGAAGAAAAACATTGTGGACAGGAATCCTGACAGCCCAGGGAAGCTTTGGTGTGCAATGAAGAACAAGAAGCAGAGGAAGAAAACCATGTACAACCCCAACAGGAACGTTGACTACTACGCCGACGAAATCCTGACCTATGAGGAGATGGCACTCTACCACCAGCCGGCCAATCGCAAGCGACCTATCGCCCTGATTGGTCCACCCAACAGCGGGCAGGACGAGCTGCGGCAAAGGCTGCTGTCCATCGAGCCGGACAGGTTCGCCGGCGCCGTGCCACATACAACTAGAAACCCACGCATACATGAGAAGAACGGGAGGGAATACCACTTTGTAAACCAGCTGGCTTTTGAGGCGGATGTGGCAGCGGGGAAGTTCATTGAGTCTGGGGAGTACGAAAGGAACCTGTACGGCACCAGCAGTGACTCGGTTCGACAGGTCATCAACTCAGGCAGGATCGGTCTGCTGTGCCTGCACACTAAGTCACTGCGGGTACTGCGGTCCTCCAACCTCAAGCCCTATGTGATCTTCATTGCGCCTCCCTCTCAGGAGCGATTGCGCACCCTGCTGGCCAAGGATGGCAAAAACCCAAAGCCAGAGGAGCTGAAGGAGCTGATTGAGAAGGCCCGGGAGATGGAGCAGGCCTACGGGCACCTGTTTGACGCGGCCATTGTTAACGGCGAGCCAGACACGGCATTCCACGAGCTCCTGCGGCTCATCAACAAGCTGGACACGGAGCCCCAGTGGGTGCCCTCCTCCTGGCTGTGCTAGGGGTAAGAGGTTAGGGTTGAGTGGTCAACCTAGCGGGCAACTCCAGGGAGCCACAGGAAGGAGAGTTtggcctgggttgtgttcattaggcaccaaatggaagaaaacgtaTTGAAACAGGAAGGGAATACCTGGACTTATCCAATGAGAACCATATGTTTTAGTTTTTCATAGATAAACGTTTTGACACATTTCACAATGATGTatcctaatgaacatgacccataACACAGACCTGGAGGAACAACCCTAAAAGGAAGGATGGACAATGATCATTGAGGCCACTGTTAGACCATTGTGGAGCCTCGCAGACACAAAATAGAGGGCCCATTCATTTTTGCCAGAAAGGGTAACTTGTCCTTTATCTAGCCTTCTTATGAAAGTTGGAGTTTACTTCATTTACAGGGATGGACTTTTTATTATAtaagtgtttgtttctgtgtttgtgaATGTTCTCTTGTGTTTTTGTCAATGTCGGCACCATTCCAGATTCCAGTAGCATATGCAAAGACATTTATCCAAAACTGTAGAAAACATATTTCCATTTTATTCTACTCTAAATAGCTATTTATAATTGTAAATATCTATTTTTAGATGAAATGGCAAACATATGTGATTTACCATTACACCAGACCCAGTCTAATAATGTATGGTTTGTTTGTATGTGGTATACAAGACTGGAACTGTCTGTCTACAGTTGAGGACCAATTTGCTCCTGGGGAACTACCGTATGTAACTTTCTCCTAGAAGTAAGGACCAAAGAGAAAGCCGTTGTATTCTAAAAATGGGTAAAGGTACTTGCTGTGTATCAATGatagtattatgttgtgttatcttGAGTTGCTGCACTTGTACATCAAAAACAGACCTCAAGAATCATTGATCATCAGTAAAGATGACCTCGGTATCCATTGTCTAGTGTACCTAGTGTCTACCTACGGACATGAACAGTGTGAAAACAACATATCAATTTAGCATCATTTAATCTGACCAACTTTTATTTTCTTTGGTACTTTATAAGCACAACTCAAAACAAGCCATCTTCAATATAATGAATATTCCTGAAGAGAATTGTTTCAAAATGGTGGACATTAAAGTTACATGAATACTATTTAATCAGGTAAAATGTATGATTTTGGAATATACTCGATACATATTCATTGTGTGTGAGGGTACGCATAGTTAAAACATTTGAGTAGGAAAAAGAACGAGAGCGAATATAAAATGTACATGGCACCACACAATACAGCATGTTACATTTAGCGCTTCAATGCAAAATGGCTGCCATTTCACATACAGGTGTGTGCCCCAGATACGTTTAGGATGTTGTACCTTGTCATAGCTTTCTCAGACAGGACTTTGTTCAATGTCTCCAGC

Function

GO: NA

KEGG:

id description
K06091 MPP5, PALS1; MAGUK p55 subfamily member 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU791235 lncRNA downstream 10731 30251481 ~ 30252854 (-) True G695100
TU791237 lncRNA downstream 30548 30228141 ~ 30233037 (-) True G695102
TU791234 lncRNA downstream 76085 30186472 ~ 30187500 (-) True G695099
TU791226 lncRNA downstream 88208 30175004 ~ 30175377 (-) True G695092
TU791050 lncRNA downstream 104231 30155584 ~ 30159354 (-) True G694939
TU791312 lncRNA upstream 113 30292454 ~ 30296845 (-) True LOC110529226
TU791336 lncRNA upstream 7819 30300160 ~ 30416414 (-) True G695152
TU791386 lncRNA upstream 128394 30420735 ~ 30420956 (-) True G695199
TU791404 lncRNA upstream 143998 30436339 ~ 30436663 (-) True G695217
TU791420 lncRNA upstream 153114 30445455 ~ 30445671 (-) True G695233
NM_001124296.1 mRNA downstream 12194 30243504 ~ 30251391 (-) True LOC100135953
XM_021612285.2 mRNA downstream 36345 30217008 ~ 30227240 (-) False LOC110529769
XM_036985256.1 mRNA upstream 110 30292451 ~ 30419612 (-) False LOC110529226
XM_036985257.1 mRNA upstream 110 30292451 ~ 30419612 (-) False LOC110529226
XM_036985258.1 mRNA upstream 110 30292451 ~ 30419612 (-) False LOC110529226
XM_036985259.1 mRNA upstream 110 30292451 ~ 30419612 (-) False LOC110529226
XM_036985260.1 mRNA upstream 110 30292451 ~ 30419612 (-) False LOC110529226
TU790962 other downstream 201417 30001763 ~ 30062168 (-) False G694858
TU790963 other downstream 201417 30038588 ~ 30062168 (-) True G694858
TU789639 other downstream 1304753 28958395 ~ 28958832 (-) True G693665
TU789291 other downstream 1669154 28593341 ~ 28594431 (-) True G693383
TU789000 other downstream 1781687 28478817 ~ 28481898 (-) True si:dkey-85n7.8
TU792305 other upstream 554561 30846902 ~ 30847209 (-) True G696068
TU792310 other upstream 562766 30855107 ~ 30855407 (-) True G696073
TU792778 other upstream 1185013 31477354 ~ 31478027 (-) True G696499
TU792983 other upstream 1365385 31657726 ~ 31679735 (-) True LOC110529793
TU793919 other upstream 1922145 32214486 ~ 32217549 (-) False LOC110529804

Expression Profile