RNA id: TCONS_00036757


Basic Information

Item Value
RNA id TCONS_00036757
length 699
lncRNA type read_through
GC content 0.33
exon number 2
gene id XLOC_017739
representative True

Chromosome Information

Item Value
chromosome id NC_007131.7
NCBI id CM002904.2
chromosome length 55201332
location 52598474 ~ 52638326 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATAGTGTTCAATAAATATACAGACAATCGTTTACTCTTAGCAGTACCTCTTAATTTGCTGATTACAGACCAAACGTACAGCCTCTGCAGTGTTTTCCACAGTCTTCGTCACGTACtgaatgtgaaagtgtgtgttttgttcatgtttttcaaCAAATTGAAGCAGCAGTGTCATATTTATAACTTAAAGATTGAGAGAAAATAAGCTACCCATCAAATCAAACCAGCACCAAACAAATGTACAGCACAACAATCCAGATCTGGATCATCTGGACAGGTTCCTAATCAAAATATAAGAGAAATGACTTTCAGAAATATGTGAAAAATCCACTGAAAGCTGATGGCACTTCACATCACCGGTTTATCCATATAATCTGCTTGACTAGTCCTCGATCTGGGATGTGTAACTGGTGTGTCAGTATAACTGGGTattctttattgatttattaattgatttgtaATAGTATAAGCCTGATAAATGTGCTTGTTCTCTCCTGCCATTAACATGTTAATCATACAGCAGGTATTTTAAGTGCAATAAGTTAGCAGTACTAATGATTATGGGATTATTATAATCAAATCTGCTGTTGTGAGTTGATAGTGAGCTCTTTAGACAACTGTCAATAAATATTATCTAATTTTAGAAAGATAATTATTGCATTATGACATTTTACTCAtggctgtatgtatatataataat

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00036756 lncRNA upstream 1108 52589298 ~ 52597366 (+) False XLOC_017738
TCONS_00036755 lncRNA upstream 53703 52543357 ~ 52544771 (+) True XLOC_017736
TCONS_00035082 lncRNA upstream 295400 52299192 ~ 52303074 (+) True XLOC_017732
TCONS_00036753 lncRNA upstream 390103 52203395 ~ 52208371 (+) False XLOC_017731
TCONS_00036754 lncRNA upstream 390103 52203532 ~ 52208371 (+) True XLOC_017731
TCONS_00036435 lncRNA downstream 32533 52670859 ~ 52671192 (+) True XLOC_017740
TCONS_00036758 lncRNA downstream 305797 52944123 ~ 52949831 (+) True XLOC_017743
TCONS_00036436 lncRNA downstream 497110 53135436 ~ 53152423 (+) True XLOC_017744
TCONS_00036759 lncRNA downstream 764727 53403053 ~ 53404514 (+) False XLOC_017749
TCONS_00036760 lncRNA downstream 764813 53403139 ~ 53404537 (+) True XLOC_017749
TCONS_00035097 mRNA upstream 1569 52595220 ~ 52596905 (+) True XLOC_017738
TCONS_00035090 mRNA upstream 15829 52546186 ~ 52582645 (+) False XLOC_017737
TCONS_00035093 mRNA upstream 15829 52546204 ~ 52582645 (+) False XLOC_017737
TCONS_00035095 mRNA upstream 23430 52554420 ~ 52575044 (+) True XLOC_017737
TCONS_00035092 mRNA upstream 23506 52546204 ~ 52574968 (+) False XLOC_017737
TCONS_00035098 mRNA downstream 136404 52774730 ~ 52815590 (+) True XLOC_017741
TCONS_00035100 mRNA downstream 522534 53160860 ~ 53189875 (+) True XLOC_017745
TCONS_00035101 mRNA downstream 542691 53181017 ~ 53262310 (+) False XLOC_017746
TCONS_00035102 mRNA downstream 542799 53181125 ~ 53262310 (+) True XLOC_017746
TCONS_00035103 mRNA downstream 640420 53278746 ~ 53279747 (+) True XLOC_017747
TCONS_00035075 other upstream 1082156 51516202 ~ 51516318 (+) True XLOC_017723
TCONS_00035066 other upstream 1386426 51211932 ~ 51212048 (+) True XLOC_017717
TCONS_00035033 other upstream 3565356 49033004 ~ 49033118 (+) True XLOC_017695
TCONS_00035023 other upstream 3985038 48613321 ~ 48613436 (+) True XLOC_017687
TCONS_00035022 other upstream 3986104 48612257 ~ 48612370 (+) True XLOC_017686
TCONS_00035099 other downstream 281530 52919856 ~ 52919986 (+) True XLOC_017742

Expression Profile

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