RNA id: XM_021612290.2


Basic Information

Item Value
RNA id XM_021612290.2
length 3380
RNA type mRNA
GC content 0.50
exon number 2
gene id LOC110529772
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 30809489 ~ 30878195 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAACCACGGGACTGTAGAGGAAAAGAGGGGCAAAGGGGGGAAAGAGAGCAGGTGGTGTATAGGCTACGAAACATGTAGGCTGGGGAGACCGCCTAAGTAAATTGACCATAAATccaatgagagagagcgagagagagcgagagagagagagaaaaaaaaaatccggGAAAGAAGAAGCAAATAGCAAAGAGACGCCAATTAGACCGGCAAAATCGGCCCGGAGCCGTGGAGAGCATAGCCACTTGGCTACTTCTGCATCGTCGGTTTTATAAATCAGACTTTTGAAGATATTATTTTCACAGTTGGCTTATTCTATCGATGCTGTTGGCTTGAATTGAGGTTTTTTTCAAGGTAATTTACGGCCACAGTAGTTGGACCGCGTTTTACATTGTGTGCTGTGCCTAGCTCTCAGTGGATTAAACGGTCGTCTCCGGAGCCTGCTGCAGAGGAATAGGGGAATTTCAGCACCCTGGACAGCGACTAGCAGTTGAGgcAGTGGCGAAGCCGGCACGTGGCGTTAGGCGAGAGGATGTTGTGTCTCTGGCCCAGTGTGAGAGCCTCCCTCCGGGAAAGTTGCCGTTGGTCGCGGGGCCCAACGGGCCACTGACCTCCCCCTCCCTTGTCTCTGTGATTTATGGCTACTGGGGATCTGGCCACTGCAGAATCCTCTTTCACTTTCACattcacaaacacatacactgcACCACTGGACAGAGCCACACACACTGCACCAGCTTCGCCAGTGCTGCCCCACAGGGTGATTCCGCCACACACTGAATAACAGaatctctctcagcctccacacGCACTGAGGGACTGAGCTGCACAAACACACTGCTTTTCTCTACCCCATAGAGCCTCATATTGCACTCTGTGTGCTATACATGCCCCTCACACACCCCTCTGTGTATCTTCCACTCCCCCTCAGTGTGTGGATTAGCATCCCAGTATCAGTCATGGACCGTCAGCCATATAGCACCTCACAGTGGCGCCTGCTTTACTAGCAGGGGGGGATCAATGGAACTGCGCTGAGTGATGAGATGATGTTCCTGTGTTCGCATGGCCTGAGAAATGACCTACCAGCAGCCCTGCAAAGACTGacacaccccccctcccccacgaCTTCACTGTTTTTACTCACTGGACTGACTCTCAATAGATTAACTGTATGACTCACTGGTGTTCCCACAGGAACCCATTATTTTTCTAAACTCGGACACCGTGAACTGGAGGTGAGGGCCAGCAGGCGGTCGGGTCCAGTCCTCGCCATGGTGTTGCCACCTCCGGACAAACGCCACGTGTGCCTGACCACCATCGTCATCATGACCAGCATGGCCTTCATGGACGCCTACCTGGTGGAGCAGAACCAGGGGCCCAGGAAGATCGGCGTGTGCATCATCGTGCTGGTCGGGGACATCTGCTTCCTCATCGTGCTGCGCTACGTGGCCGTGTGGGTGGGCGCCGAGGTACGCACGGCCCGCCGCGGCTACGCCATGATCCTCTGGTTCCTCTACATATTTGTGCTGGAGATCAAGCTCTACTTCGTCTTCCAGAACTGCAAGGCAGATAGGAAGTCTCTGGAGACTGTGGCCCGGAAAGCCTTGACTCTGTTACTGTCTGTGTGCGTCCCAGGGCTTTACTTGGTTCTAGTGGCTCTGGACAACATGGAGTACGTGAGGACCTTCAGGAAGAAGGAGGACATGCGGGGGAGGCTCTTCTGGGTGGCTCTAGATCTTCTGGATCTTCTGGACATCCAGGCCAACCTGTGGGAGCCTCAGCGGACCGGCCTGCCAATCTGGGCCGAGGGACTGATGTTTTTCTACTgctacatcctcctcctcatcctgccCTGCGTCTCGCTCAGTGAGATCTCCATGCAAGGGGAGCACGTGTCGCCCCAGAAGATGATGCTCTATCCCATCCTTAGCCTAGTCACCATCAACGTGGTCACCATCCTGATCCGTGGGGTCAACATGGTCCTGTTCCAGGACAGTAGAGTCTCAACCATCTTCGTGGGCAAGAACGTGGTGGCGATCGCTACGAAGGCGTCCACGTTCCTGGAGTACCGGCGTCAAGTGAAGGAGTTCCCCCATCCGCAGAACACCATGGCGTTGGAGCTGCAGCAGAACTCGGTGTGCCATGGACATGCGCCCCACACATCGCACTCGCAGACCCTGCCCAACTCCACCAACCTGCCCCACGAACCCTCGCCAGCTCGCAACATAGACACATGACCGCCAGACACATGAGTCACTCCACTGTTGTGATCAGTGACTAACCAAAACCCTAAGTTCTGGCTGGACTTGTTCTATCTATCCAGCCGTGGAGATGTTGGTGTTAAGAGAGAAATGGGTTTCAAGACAGGATTGTATTGTTCTTCCTGTCATACAACTGTGAACAACTGTGGATATAACAACTAGAGGGATATTTATAGCCTAGACTGTCTgttggagaaggagaaagattCACCTTCTTGATTCTGACAAGAAGGAACTGACATGGTTTTTATTGAATTGTGTATCGAATTGTGTTTTTAAATTAACCGTTTTAAAACTTTATTAATAATATCGGACAATCTCCATATTCTGCAGCTCAGTGATGTACGTATGTTGTGTAACAGTAAATTGGAAAATGTGTTCCTCCCTGAATATATATGGGATTTTTTTCAAATGCCCCTTTTCGACCGTCCATTGCGTGGCTTTTATTCTTTGTTGTCCTTAGAAACGGAGGTACACCCCTCGCTCTGAAGAAGCACTTCAgttggagtggagaaagagaggatggagagaacgGGAAGGAGAAAGGGTCAATAAGAAGGTTTGTTTGAGCCGCGGTGGGGGGATGGGTGGCAATAGAAGAGTAAAATTCAGCCTCTGCTTAGTTCTGCTGAGAAAGGAGCCTGCTGCCTCTGTCAGTGTGATGTTTTATGACCAAATGTCTGATAAAAGCACCAGAGCTCAGCACTATACACTCCACTCAAGGCAGccaactctctgtgtgtgtgggcggatgggggggggggggggggggagcgtgTGAAACTGTATTTTCATGTACTGTAAGCGTGTGGCTTAACAAAAGTGGGTGTGAAAGAAACAACAAAGGGGAGAAGAGATGTGTTCATGTCAGAAAAACAGAAGGGAGAAAGATCGTGCTGATTTCCCTTACTGTACAGCCTTGAAGTCAAAAAATGCAGAGAAGTGCAGACCTTGCCTCGTTGACAAACGTTGAAATATAAATGTACAATCCAACCTGAGAACTGCAAACTATTTCTACTTAACTGATGAAGTGAGTGTTAAAGTATTATTCATatgattaatattattattatgtacATTCTTTACAAAAAACGTTATGTTGGAGGCAAGTAATGTTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU791818 lncRNA upstream 19660 30789381 ~ 30789829 (+) True G695618
TU791779 lncRNA upstream 68710 30740554 ~ 30740779 (+) True G695580
TU791778 lncRNA upstream 69325 30739862 ~ 30740164 (+) True G695579
TU791750 lncRNA upstream 92743 30716398 ~ 30716746 (+) True G695552
TU791472 lncRNA upstream 284613 30524532 ~ 30524876 (+) True G695284
TU791937 lncRNA downstream 22914 30901109 ~ 30901445 (+) True G695730
TU791939 lncRNA downstream 25138 30903333 ~ 30905627 (+) True G695732
TU791940 lncRNA downstream 27562 30905757 ~ 30909773 (+) False G695733
TU791941 lncRNA downstream 27562 30905757 ~ 30907664 (+) True G695733
TU791942 lncRNA downstream 31664 30909859 ~ 30911517 (+) True G695734
XR_005052853.1 mRNA upstream 144031 30655621 ~ 30665458 (+) True LOC118965506
XM_021612288.2 mRNA upstream 546005 30251466 ~ 30263484 (+) True LOC110529770
XM_036985254.1 mRNA upstream 566189 30227409 ~ 30243300 (+) False LOC110529768
NM_001165090.2 mRNA downstream 165832 31044027 ~ 31047421 (+) False ndufb1
XM_036985275.1 mRNA downstream 177015 31055210 ~ 31097963 (+) True LOC110529776
LOC110529228 mRNA downstream 251315 31129510 ~ 31140471 (+) True LOC110529228
XM_021614359.2 mRNA downstream 267339 31145534 ~ 31146912 (+) True LOC110531085
XM_036985276.1 mRNA downstream 279677 31157872 ~ 31204182 (+) False si:dkey-174m14.3
TU790056 other upstream 1016742 29790997 ~ 29792747 (+) True G694036
TU789468 other upstream 1871216 28930760 ~ 28938273 (+) False cdca4
TU789469 other upstream 1871216 28935489 ~ 28938273 (+) True cdca4
TU789102 other upstream 2103737 28704850 ~ 28705752 (+) True G693207
TU789022 other upstream 2251116 28495285 ~ 28558373 (+) True btbd7
TU796067 other downstream 3249398 34127593 ~ 34128301 (+) True G699605
TU797136 other downstream 4576653 35454848 ~ 35462040 (+) True LOC110529856
TU797266 other downstream 4734969 35613164 ~ 35614666 (+) True G700685
TU797474 other downstream 5025854 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 5822243 36700438 ~ 36700739 (+) True G702415

Expression Profile