RNA id: XM_021612292.2


Basic Information

Item Value
RNA id XM_021612292.2
length 3001
RNA type mRNA
GC content 0.50
exon number 2
gene id LOC110529772
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 30809489 ~ 30878195 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGTCATGAGCAAACATTTTGATTGCCACACACAAAGTCAGTTTAATAATACTGAGGATATTGTGTCTACAATTTCGACCAGCTGAAGAATCAACACCACGGACAATCGGCAGAgcAGTGGCGAAGCCGGCACGTGGCGTTAGGCGAGAGGATGTTGTGTCTCTGGCCCAGTGTGAGAGCCTCCCTCCGGGAAAGTTGCCGTTGGTCGCGGGGCCCAACGGGCCACTGACCTCCCCCTCCCTTGTCTCTGTGATTTATGGCTACTGGGGATCTGGCCACTGCAGAATCCTCTTTCACTTTCACattcacaaacacatacactgcACCACTGGACAGAGCCACACACACTGCACCAGCTTCGCCAGTGCTGCCCCACAGGGTGATTCCGCCACACACTGAATAACAGaatctctctcagcctccacacGCACTGAGGGACTGAGCTGCACAAACACACTGCTTTTCTCTACCCCATAGAGCCTCATATTGCACTCTGTGTGCTATACATGCCCCTCACACACCCCTCTGTGTATCTTCCACTCCCCCTCAGTGTGTGGATTAGCATCCCAGTATCAGTCATGGACCGTCAGCCATATAGCACCTCACAGTGGCGCCTGCTTTACTAGCAGGGGGGGATCAATGGAACTGCGCTGAGTGATGAGATGATGTTCCTGTGTTCGCATGGCCTGAGAAATGACCTACCAGCAGCCCTGCAAAGACTGacacaccccccctcccccacgaCTTCACTGTTTTTACTCACTGGACTGACTCTCAATAGATTAACTGTATGACTCACTGGTGTTCCCACAGGAACCCATTATTTTTCTAAACTCGGACACCGTGAACTGGAGGTGAGGGCCAGCAGGCGGTCGGGTCCAGTCCTCGCCATGGTGTTGCCACCTCCGGACAAACGCCACGTGTGCCTGACCACCATCGTCATCATGACCAGCATGGCCTTCATGGACGCCTACCTGGTGGAGCAGAACCAGGGGCCCAGGAAGATCGGCGTGTGCATCATCGTGCTGGTCGGGGACATCTGCTTCCTCATCGTGCTGCGCTACGTGGCCGTGTGGGTGGGCGCCGAGGTACGCACGGCCCGCCGCGGCTACGCCATGATCCTCTGGTTCCTCTACATATTTGTGCTGGAGATCAAGCTCTACTTCGTCTTCCAGAACTGCAAGGCAGATAGGAAGTCTCTGGAGACTGTGGCCCGGAAAGCCTTGACTCTGTTACTGTCTGTGTGCGTCCCAGGGCTTTACTTGGTTCTAGTGGCTCTGGACAACATGGAGTACGTGAGGACCTTCAGGAAGAAGGAGGACATGCGGGGGAGGCTCTTCTGGGTGGCTCTAGATCTTCTGGATCTTCTGGACATCCAGGCCAACCTGTGGGAGCCTCAGCGGACCGGCCTGCCAATCTGGGCCGAGGGACTGATGTTTTTCTACTgctacatcctcctcctcatcctgccCTGCGTCTCGCTCAGTGAGATCTCCATGCAAGGGGAGCACGTGTCGCCCCAGAAGATGATGCTCTATCCCATCCTTAGCCTAGTCACCATCAACGTGGTCACCATCCTGATCCGTGGGGTCAACATGGTCCTGTTCCAGGACAGTAGAGTCTCAACCATCTTCGTGGGCAAGAACGTGGTGGCGATCGCTACGAAGGCGTCCACGTTCCTGGAGTACCGGCGTCAAGTGAAGGAGTTCCCCCATCCGCAGAACACCATGGCGTTGGAGCTGCAGCAGAACTCGGTGTGCCATGGACATGCGCCCCACACATCGCACTCGCAGACCCTGCCCAACTCCACCAACCTGCCCCACGAACCCTCGCCAGCTCGCAACATAGACACATGACCGCCAGACACATGAGTCACTCCACTGTTGTGATCAGTGACTAACCAAAACCCTAAGTTCTGGCTGGACTTGTTCTATCTATCCAGCCGTGGAGATGTTGGTGTTAAGAGAGAAATGGGTTTCAAGACAGGATTGTATTGTTCTTCCTGTCATACAACTGTGAACAACTGTGGATATAACAACTAGAGGGATATTTATAGCCTAGACTGTCTgttggagaaggagaaagattCACCTTCTTGATTCTGACAAGAAGGAACTGACATGGTTTTTATTGAATTGTGTATCGAATTGTGTTTTTAAATTAACCGTTTTAAAACTTTATTAATAATATCGGACAATCTCCATATTCTGCAGCTCAGTGATGTACGTATGTTGTGTAACAGTAAATTGGAAAATGTGTTCCTCCCTGAATATATATGGGATTTTTTTCAAATGCCCCTTTTCGACCGTCCATTGCGTGGCTTTTATTCTTTGTTGTCCTTAGAAACGGAGGTACACCCCTCGCTCTGAAGAAGCACTTCAgttggagtggagaaagagaggatggagagaacgGGAAGGAGAAAGGGTCAATAAGAAGGTTTGTTTGAGCCGCGGTGGGGGGATGGGTGGCAATAGAAGAGTAAAATTCAGCCTCTGCTTAGTTCTGCTGAGAAAGGAGCCTGCTGCCTCTGTCAGTGTGATGTTTTATGACCAAATGTCTGATAAAAGCACCAGAGCTCAGCACTATACACTCCACTCAAGGCAGccaactctctgtgtgtgtgggcggatgggggggggggggggggggagcgtgTGAAACTGTATTTTCATGTACTGTAAGCGTGTGGCTTAACAAAAGTGGGTGTGAAAGAAACAACAAAGGGGAGAAGAGATGTGTTCATGTCAGAAAAACAGAAGGGAGAAAGATCGTGCTGATTTCCCTTACTGTACAGCCTTGAAGTCAAAAAATGCAGAGAAGTGCAGACCTTGCCTCGTTGACAAACGTTGAAATATAAATGTACAATCCAACCTGAGAACTGCAAACTATTTCTACTTAACTGATGAAGTGAGTGTTAAAGTATTATTCATatgattaatattattattatgtacATTCTTTACAAAAAACGTTATGTTGGAGGCAAGTAATGTTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU791909 lncRNA upstream 13957 30854801 ~ 30855122 (+) True G695705
TU791908 lncRNA upstream 14818 30853155 ~ 30854261 (+) True G695704
TU791907 lncRNA upstream 18465 30850360 ~ 30850614 (+) True G695703
TU791895 lncRNA upstream 31089 30837711 ~ 30837990 (+) True G695691
TU791891 lncRNA upstream 41281 30826636 ~ 30827798 (+) False G695689
TU791937 lncRNA downstream 22914 30901109 ~ 30901445 (+) True G695730
TU791939 lncRNA downstream 25138 30903333 ~ 30905627 (+) True G695732
TU791940 lncRNA downstream 27562 30905757 ~ 30909773 (+) False G695733
TU791941 lncRNA downstream 27562 30905757 ~ 30907664 (+) True G695733
TU791942 lncRNA downstream 31664 30909859 ~ 30911517 (+) True G695734
XR_005052853.1 mRNA upstream 203621 30655621 ~ 30665458 (+) True LOC118965506
XM_021612288.2 mRNA upstream 605595 30251466 ~ 30263484 (+) True LOC110529770
XM_036985255.1 mRNA upstream 625779 30227409 ~ 30243300 (+) False LOC110529768
NM_001165090.2 mRNA downstream 165832 31044027 ~ 31047421 (+) False ndufb1
XM_036985275.1 mRNA downstream 177015 31055210 ~ 31097963 (+) True LOC110529776
LOC110529228 mRNA downstream 251315 31129510 ~ 31140471 (+) True LOC110529228
XM_021614359.2 mRNA downstream 267339 31145534 ~ 31146912 (+) True LOC110531085
XM_036985276.1 mRNA downstream 279677 31157872 ~ 31204182 (+) False si:dkey-174m14.3
TU790056 other upstream 1076332 29790997 ~ 29792747 (+) True G694036
TU789468 other upstream 1930806 28930760 ~ 28938273 (+) False cdca4
TU789469 other upstream 1930806 28935489 ~ 28938273 (+) True cdca4
TU789102 other upstream 2163327 28704850 ~ 28705752 (+) True G693207
TU789022 other upstream 2310706 28495285 ~ 28558373 (+) True btbd7
TU796067 other downstream 3249398 34127593 ~ 34128301 (+) True G699605
TU797136 other downstream 4576653 35454848 ~ 35462040 (+) True LOC110529856
TU797266 other downstream 4734969 35613164 ~ 35614666 (+) True G700685
TU797474 other downstream 5025854 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 5822243 36700438 ~ 36700739 (+) True G702415

Expression Profile