RNA id: XM_021612294.2


Basic Information

Item Value
RNA id XM_021612294.2
length 3041
RNA type mRNA
GC content 0.55
exon number 15
gene id LOC110529774
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 31024376 ~ 31044032 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCTCTCACATTTTCAGCGGCAAGCTTCCGCTTCATTGAAAGACTTGTTGACAATCGTTGCTGAAAATGCCGTAATGTTAGACTGTTCATGTTATTGATTTCTTTGCTCAGTTTTTGTGAAATAGTATATGGCACTTTATGTATGACAGCTGAGGAGAATGACTTCTATTATCAAACTGACCGCTGTGTCAGGGGTGCAGGAGGAGTCTGCCCTCTGCTACCTGCTGCAGGTGGATGAGTTCCGCTTCCTCCTGGACTGTGGCTGGGATGAGAGCTTCTCTATGGACATTATTGATGCCATGAAAAGGTATGTCCACCAGGTTGATGCGGTGCTCCTCTCCCATCCTGACCCCCTGCACCTGGGGGCTCTGCCCTACGCCGTGGGCAAGCTGGGCCTCAACTGCCCCATCTACGCCACCATCCCTGTCTACAAGATGGGTCAGATGTTCATGTATGACCTGTATCAGTCGCGCAACAACACTGAGGACTTCAACCTGTTCACCCTGGATGATGTAGACTGCGCTTTTGATAAAATCCAGCAGTTGAAGTACTCCCAGATTGTAAATCTGAAAGGGAAAGGACATGGTCTGTCCATCACTCCACTTCCTGCTGGTCACATGATCGGTGGGACCATCTGGAAGATTGTgaaggatggggaggaggagattgTTTACGCAGTGGACTTCAACCACAAGCGAGAGATCCACCTGAATGGGTGTACATTGGAGTCGGTGAGTCGTCCCTCTCTGCTCATCACAGACTCCTTTAACGCTACATACGTGCAGCCGCGTCGCAAACAAAGGGACGAGCAGCTTCTAACCAATGTGATGGAGACGCTACGTGGTGACGGCAATGTGCTGATTGCCGTGGATACGGCGGGCCGTGTGCTTGAGCTGGCTCAACTACTGGACCAGATCTGGAGGACGAAGGACGCCGGTCTCGGGGTCTACTCTCTGGCCCTGCTCAACAACGTCAGCTACAACGTGGTGGAGTTCTCCAAGTCTCAGGTGGAGTGGATGAGTGACAAGCTGATGCGTTGCTTCGAGGACAAGCGTAACAACCCTTTCCAGTTCCGCCACCTGTCCCTGTGCCACAGCCTGGCCGACCTGGCTCGCGTGCCCAGCCCCAAGGTTGTGCTCTGCAGCCAGCCCGACCTGGAGTCTGGCTTCTCCCGCGAGCTCTTCATCCAGTGGTGCCAGGAGGCCAAGAACTCAGTGATCCTCACCTACCGCACCACGCCTGGCACCCTGGGCCGCTACCTCATCGATAACCCCGGGGAGAAGATGCTAGACCTGGAGATTAGAAAACGGGTGAAGCTGGAAGGCAGGGAGCTGGAAGAAtacctggagaaagagagaatgaagaagGAAGCTGCCAAAAAACTTGAACAAGAAAAAGAGGTGGATGTGGACTCCAGTGACGAGAGCGACATGGAGGATGACCTGGAGCTGCCGGCGATGGTGAAGACCAAACACCACGACCTGATGATGAAGGGAGACGGCGTCCGCAAGGGCAGCTTCTTCAAACAGGCCAAGAAGTCCTACCCCATGTTCCCCACCCACGAGGAGAGGGTCAAATGGGATGAGTACGGAGAGATCATCAGGCCGGAGGACTTCCTGGTACCAGAGCTCCAGgccacagaggaggagaagaacaaGCTGGAGTCGGGCATGGCCAAAGGAGACGAACCCATGGACCAGGACCTCTCATCCAAAGTACCCACCAAGTGTACCTCCACTACAGAGAACCTGGAGATCAAAGCCAGGGTGACGTACATCGACTACGAGGGGCGTTCAGACGGCGACTCTATCAAGAAGATCATCAATCAGATGAAGCCTCGGCAGCTGGTGATCGTGCACGGCCCTCCCGAGGCCAGCCTGGACCTGGCCGAGTCCTGCAAGGCCTTCACCAAGGACATTAAGGTCTACACACCTAAGCTGCAGGAGACTGTGGACGCCACCAGTGAGACACACATCTACCAGGTGCGGTTGAAAGACTCGCTGGTGAGCTCGCTGCAGTTTTGCCGCGCCAAGGACACGGAGCTGGCGTGGATTGACGGCGTGCTGGACATGCGCGTGGTCAAGGTGGACACAGGCGTGCTGCCCGAGGAGGGCATGATGAAGGGTGAAAAGGGAGCTGGCGAGGAGGCCGTGGAGGATGGCGAGCTGGCCATGGACGTGACCCCTGCTGACGACGGCGCCACAGACCATAGTGTGGTGGCTCAGCAGCGCGCCATGAAGACGCTGTTTGGCGAGGACGTGCGCGAGCCGTCGGAGGAGAGTGACGTCATCCCCACCCTGGAGCCCCTGCCCGCCCACgagATCCCAGGCCACCAGTCGGTGTTCATCAACGAGCCCCGCCTGTCCGACTTCAAGCAGGTGCTGCTGAGGGAAGGCATCCAGGCTGAGTTTGTGGGAGGAGTGCTGGTGTGCAACAACATTGTGGCCGTCCGCAGGACGGAGGCAGGGCGCATCGGCCTGGAGGGCTGCCTGTGTGATGACTACTATAAAATCCGTGAGCTGCTCTATCAGCAGTATGCTGTGGTATAGGAGAGACGAGCAGCCGCGGAGACGGCGTCGGCCGTTACATGATCACACAGAGACATTCCgtttgagaggagagagagtggagagagcggACGATACCCAGAGGACCACAGTGTTCTAGGTGTTCTCCGCACACAGGCTACCTGAGCTCCCCTCGAGCATCTCCAGCTGTTTTACTTCCAACCGCTGTGTTGATTTCTCCTTTTTTACCCCCTTTGTctgtttactgttatttttttttattgtgcgtCTTTCCCCCCGCAGTGAGAGACAGATGGGCTCTCCCTTAGTGACCTCTCCTTGATGCTAACACATGATGTGCGAACCAACGGTAACCCTTAGGGTCTTTTTTACCTCTCCTCAAACTCCCTCAGCTCTGGAGAACATTCACCACACACTCGCTGGAGAGTGCCAACATCGCTTGACATAGGCTGAAAtggtttctgtttttttgttttctaCTACTCATTAAATTCCCTTTTTTTGAACAATTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU792428 lncRNA downstream 8107 31015946 ~ 31016269 (-) True G696176
TU792373 lncRNA downstream 82282 30941880 ~ 30942094 (-) True G696126
TU792372 lncRNA downstream 82987 30941182 ~ 30941389 (-) True G696125
TU792367 lncRNA downstream 92633 30931520 ~ 30931743 (-) True G696120
TU792362 lncRNA downstream 102416 30921670 ~ 30921960 (-) True G696115
TU792474 lncRNA upstream 42462 31086494 ~ 31089094 (-) True G696220
TU792478 lncRNA upstream 50316 31094348 ~ 31097930 (-) True G696224
TU792479 lncRNA upstream 54748 31098780 ~ 31100779 (-) True LOC110529227
TU792544 lncRNA upstream 157542 31201574 ~ 31204165 (-) True G696289
TU792549 lncRNA upstream 164971 31209003 ~ 31216605 (-) True LOC110529778
XM_021612293.2 mRNA downstream 34667 30912131 ~ 30989709 (-) True LOC110529773
XR_005052854.1 mRNA downstream 255031 30767251 ~ 30769345 (-) True LOC118965507
XM_036985273.1 mRNA downstream 336898 30529289 ~ 30687478 (-) True LOC110529771
XM_036985267.1 mRNA downstream 604764 30292451 ~ 30419612 (-) False LOC110529226
XM_021612296.2 mRNA upstream 3478 31047510 ~ 31051722 (-) True LOC110529775
trnaa-ugc-25 mRNA upstream 26311 31070343 ~ 31070417 (-) True trnaa-ugc-25
XM_021611348.2 mRNA upstream 55494 31099526 ~ 31120500 (-) False LOC110529227
LOC118965648 mRNA upstream 72546 31116578 ~ 31116747 (-) True LOC118965648
XM_021612304.2 mRNA upstream 164971 31209003 ~ 31216765 (-) False LOC110529778
TU792310 other downstream 168969 30855107 ~ 30855407 (-) True G696073
TU792305 other downstream 177167 30846902 ~ 30847209 (-) True G696068
TU790962 other downstream 962208 30001763 ~ 30062168 (-) False G694858
TU790963 other downstream 962208 30038588 ~ 30062168 (-) True G694858
TU789639 other downstream 2065544 28958395 ~ 28958832 (-) True G693665
TU792778 other upstream 433322 31477354 ~ 31478027 (-) True G696499
TU792983 other upstream 613694 31657726 ~ 31679735 (-) True LOC110529793
TU793919 other upstream 1170454 32214486 ~ 32217549 (-) False LOC110529804
TU793920 other upstream 1170454 32214486 ~ 32217549 (-) True LOC110529804
TU794118 other upstream 1454767 32498799 ~ 32499410 (-) True G697774

Expression Profile