RNA id: XM_036985275.1


Basic Information

Item Value
RNA id XM_036985275.1
length 6897
RNA type mRNA
GC content 0.51
exon number 6
gene id LOC110529776
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 31055210 ~ 31097963 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGTCCAATGTTCAGCAACTCCCAGTCCCAGAATGCTTCAGTATGCTTGCCTAGCCTTCTCCAACAATGCAGCTCAATGTAAAATTGATCGTGCACACAGGGGGATCTAGATCTAGCTAGCTACGCGTACATGGTTACATTAAACACCGAGCATGCCATTTTGTTATCACCTTGCATAACGTGACATATATTTTGAAGCCTTTTGAAGGTTTTTATTTGGAGACATTTCGGAGCTTCATACCGGGTCTTGTTATTCAACATTGGAGGAGAATTTGGAGGCCTTTCATTCTTTGACGGACCTAGAAGAAATGGGCACAACCAGGGCAGTAGCAGCTGACCCATGATGCCACACTGCAGGACTGTGACCAGCCATGCCCTCCTCCCCAACGTTTACCATAAGGGGCTCCTCTCCACCCGACAGTTTGCTCACATAGGCCAGAAATACAACTACACCATACAAGAGGAACGATGGCAAGGACTTGTTTGAACTATGGCATGCCAGCAAGACAAAGGTCCCCAACATCTGATACCAAAAGGAAAACCACGATCAGGTAGATCCACTCAGATGACATTTTATGAGGACAAAACAAGTCGATTTAACAATTATGATGGTTTAGCGGCTTCACTGTTTCACCATGTTGACGAGGTTGCACCATGGCTGCTGATCCCTGTAGACTAGTAGAGACTCCGGCGCTGAGCTAAGCCCAGTGACCCTAACCCATGATGCAGCGTAACGGTGGCGGGGTGGGGCCCGGCGGCCAGCCGTGGCTGCTGCGGCGCGTACGCCTCACCTGGCTCAGCTTCATGCTCTTCTTCATCCTGGTTTTCTTCCCACTCATTGCCCACTACTACCTCACCACCATCGACGAGGCAGGCGGCCCCGACAAGCGCATCTTCGGCCCGCGGCCTGGCGGCGAACTGTGCGAGACCAAGCACGTGCAAGACCTGTGCCGCATCCGTGAGTCAGTCAGTGAGGAGCTGCTACAGCTGGAGGCAAAGCGTCAGGAGCTGAACGGGGAGATCTCCCGGCTCAACCTGCGCATCGAGGCGTGCAAGCGGAGCATCGACAGTGCCAAGCAGGACCTGCTGCAGCTGAAGAATGTCATCAGCCAGACGGAGCACTCGTACAAAGAGCTGATGGCCCAGAACCAGCCCAAGCTTTCTCTGCCCGTGAGGTTATTACCTGACAAGGATGACCCAGGCCTGCCCCCGCCCAAGTCTGCCCGTGCCTGCCGCCTGCGCTCCTGCTTCGACTACGCCCGCTGCCCGTTGACCTCTGGCTTCCCTGTGTACGTCTATGACACGGCCTCCTACCCCTGGGGCGAGTCTCTGGACCCATTGGTCAAGCAGGCTTTCGCCACCTCGGTAAAGAGCAGCATCTATGTGACGAACAACCCCAGCATCGCCTGTCTGTATGTGGTGCTGGTTGGGGAGCTGCAGGAGactccctcctccccactcccgGCTTCCTTGGAGCTGGAGAAGCAGCTGAAGGCTCTACCCTACTGGAGGTCTGATGGACACAACCACCTCCTGGTCCATCTTTCCAGGAAGTCCATGACGCAGAACTTCCTGTACAATGTGAGCACGGGCCGAGCGGCAGTGGCCCAGTCTACCTTCCTGGAGCAGCAGTACCGCGAGGGCTTTGACTTGGTGGTGTCCCCGCTGGTCCACGCCCTCTCTGAGCCCAACTTCCTGGAGGTGCCGCCCCAGGTGCCCGTCAAGAGGAAGTACCTGTTCACCTTCCAGGGCGAAAAGGTGGAGTCTCTGCGAAGTAGCCTGCAGGAGGGACCGCACCAGTCCtttgaggaggagatggagggagatgcgCCAGCCGACTACGATGACCGCATCATCGGCACGCTCAAGGCGGTTCAGGACAGCCGCCTGGACCAGGTGCTGGTGGAGTTCACCTGTAAGAGCCCGCGGCCCAGCCTGCCTACCGAGTGGGCTCTGTGTGGCGAGAGGGAGGAGCGGCTCGAGGTCCTCAAGGCCTCCACTTTCGCCCTGGTCATCTCCCCTGGGGACTGTCAGCTGGTGGCCTCTGCAGGCAGTAGCATGAGGCTGTTTGAAGCCCTAGAGGTGGGGGCCATCCCTGTGGTGCTTGGGGACCACGCTAGGCTGCCCTACCATGAGCTGATCCGCTGGAGCGAGGCAGCCATCATGGTGCCTAAGCCCCGCATCACCGAGCTGCATTTCCTGCTGCGTAGCCTATCAGACAACGACCTGCTGGCCATGCGACGACAGGGCCGCTTCCTGTGGGAGACCTACTTCTCCACCTCGGAGAATGTACTGGGAACCATCCTGGCCAGCGTCCGGACCAGCATCCAGGTGCCTGCCGCACCCATCCGCGAAGAGCCCGCCCAGGAGATCCCCCACAAAGCAGGCAAGATGGCCGGCACGGACGCCAACCTGGCCGACAACGGTGACCTGGACCTGGGCCCCGTGGAGACGGAGCCACCCTACGCCTCGCCGCGCTTCCTCCGCAACTTTACCTACACGTCAGCCAACACCTACCAGACCTGGAACCGTGCCCCGGGGCCTTTCCATCTGTTCCCCCACACGCCGCTGGACCCCGTGCTGCCCTCGGAGGCCAAGTTCCTGGGCTCGGGCACGGGCTTCCGCCCCATTGGCGGCGGTGCTGGGGGCTCGGGGAAGGAGTTTCAGGCAGCGCTGGGTGGTAACGTGCCCCGGGAGCAGTTCACGGTGGTCATGCTGACCTACGAGAGGGAGGAGGTGCTAATGAACTCCCTGGAAAGGCTCAACGGGTTGCCCTACCTCAacaaggtggtggtggtgtggaacTCCCCCAAGCCTCCTTCAGACGACCTGCTGTGGCCAGACATTGGCCTGCCCATCGTGGTGGTGCGCACGGAGAAGAACAGCCTCAACAACCGCTTCCTGCCCTGGGACGCCGTGGAGACGGAGGCCATCTTGTCCATCGACGACGACGCCCACCTCCGCCATGACGAGATTATGTTTGGGTTCAGGGTGTGGCGGGAGGCCAGGGACCGCATTGTGGGCTTCCCCGGGAGGTTCCATGCCTGGGACGTCAACCACCAGTCATGGCTCTACAACTCTAACTACTCCTGTgaactgtccatggtgctgacggGCGCCGCCTTCTTTCACAAGTACTACGCGTACCTGTACTCGTATGTGATGCCTCAGGCCATCCGCGACATGGTGGACGAGTACATCAACTGCGAGGATATCGCCATGAACTTCCTGGTGTCACACATCACCCGAAAGCCCCCTATCAAGGTGACGTCTCGTTGGACCTTCCGCTGCCCCGGCTGCCCGCAGGCCCTGTCGCACGACGACTCTCACTTCCACGAGCGCCACAAGTGCATCAACTTCTTTGTCAAGGTGTACGGCTACATGCCCTTACTCTACACACAGTTCCGCGTGGACTCTGTGCTCTTCAAGACACGTCTGCCCCACGACAAGACTAAGTGCTTCAAGTTCATCTAGCCCAGGGCTAGGCCCAGCTAAGGAAGTTGGGCAGAACGGAGCAAGAGAATGAGGAACTCGGGTAAAACGGAAGAAAGgcggaagagggagaagagagggctgGTTCTGAGATGGATGGAAGTTTGGGGGTGAGGGCCTACACCTAAGAATTGGATCTAGGATGTACAATAACAACCCTCTCCAGTTAATTGGCTGAACCCCCTCAGAGCCGCCCCCCCACACCTTTACTGGAACCCCTGATAGGCTGGAAGCAGAGAAGGGCCGCTGCCAATCAAAAAGCCTTTTCATTTGTTTTCTGTCCTCATGTCATCTGTGTGTTTTATCAGCAACCACTACAGATTCAATTTTTTGCGCCACTTTTTATGGGCACGAGGGGTGGTAACACTGCCTACCCAAGGACTTAACTTGACTCTCAGAGCCAAACTCAAACTGACAATGTAAACGACTGGTTTTAAACTGACACAGggagagcgagaccgagagacagTGGACTGTCGCAGTGGGTCCTGAGCTCCTGAATCGCTAGCTAGACATGTAACCTTTTGGGAGAGAAACAAAGGGGCAAAGGCATATACGGTTTGTCATTGCACtcatttctttattttattattttttttactcattttacATTTATATACTCTACTCTTGTATATGAAACGGCGAGAGAAGCACTGATGGTCGCAGAAGTATTTTTTTTCGGTGATCTTgtttttttgttagtttttttacgTGGTGTTTAATTTTGTAAATCTCAATCTCGACGTGGGATTATCAGTCAACAAGACCCTCTTGTCGTTGGCAgacccatagaaatagaattactagaATGGGCAAAGCCCCTCAGACCATGGCATTCTCAGAGTAGATTTTGTTTCTATGGGCAGACCGGAGCTAACTCCAGGCAGAGTCCCGTTTGTCACTCTGCCTCTCAATGACTACAGATGGAGACTAAAGAACAGGATTTTTAGGCCACAAGTTCTATATATTTATCCCCTCCCCTGAAAAAAAGCAGACTACAATGGTTTTACGCTGGACCGAAACACTTACTAGGCCCTGTTGTTTTCAGAATGGTTGTCACCAGCCGTCACTGAGCGTTTACACGGCTTTTTGTGACTTTTTGGATCTTGGTGGTATTAGGCTACCTATCAATGGTCGGCGTTAAATGACGGGGTAGTCGTTCCTATATTGTCCTCTAATGAAGTGTTCAGTAATGGAGGAGGGTGAACTCTTGCCCCTAGATTCTGAtattgggtcagttttgcatttcccccaccaatggttaaaggcccagtgcagtcaaaaccgTTGATTTTTGTGTTTTATCATGTATTTCCACActgtgaggttggaataatactgtgaaattctGAAAATGGTGACGCCtttttttagtgtaagagctgtttgaaaagacagacaattcagcctgttttggtgggagggCGTTTTGGCCTGGTGACATTACCAGGCAGTAAATAAGACTTTCagacctctctgccaataacagctcagACCactgctctttgctaagaagctatttttgtttgttttcaattaaaatggtcaaaaagaatcacagtaaggtacttaattgttacccagaagtgatttgatattgagataaaaatggctgcattggacctttaaggttaggattgggggaggagaagctgatcccagatctgtacctaggggaagaCTTGGCCCCGAAACATTTAATAATTGTTTCAATTGGGCAATTTTGGGAAACAAGTCTACAAATATCAGACCTTAGTGCAAGGAACTGAAAAACAAGCTTATTTTGGTGTTTCTAtccctcatcatcatcacagtTCCATTCAGTATTAACCTCCAAAATGAGCTGCTTCTCTGTACAGTGTCTCCACGTCCGGTCCCTCAAGTTTCATTTTGTAACGATTGATGCTCAATGAATGTTTTCTTTGCCAAATAGGTACGATTTTAactgctgaaaaacagcacaatGTTTTGACGAGTGCACAATGTGAACGCTTGTTAATAGGATGCGGTCTGGTACACCCTTGCCCCCTAACCCATTTTAGACAGCATCCCCCCACTCCCccctcttaaaaaaaaaaaaaaaaagaaaagaaagttGACTCCCCCCTCACCAATTGAAATAACAGTGCCTATACAGCCCTTATAAATTAACATGCTTTGACCTTTTCTGGCTTCATTCCATTGATTTGACTTGAGGATCTCATCTGTAACACTAGATCCTTTATTTGAGATGATTCAGGAGATGTGACGACACTGTTGATCAGCAATAGGAAACTATTTGATTCTGGGAAGTTCAAACTATGGAACTCCGCATTATCGTCCCCATGATGTCTGTATATTTATTGAATTGAATATATAAAATGGGTATACTAAGGCTTGCTTCTGAAGGGGTTAACTTTGTGAATAGAAATGATGACTGTAATAAAATGAAACGTGACCTTGGTCAACGGAACCTCCTCACCTGACTGGCCACGCATCACTGGTCCacttcaacatctattccacattggttcaaagtcctttcattgaaatgacgtggaaacaactttgattcaaccagtgtgtgtgcccagtggggggGCCTCATTAGAACACTAACGAGAACCAGCAGGTGGCATTCACAGCTCGACTTAAAACTCGCCCTAAAACACAGATCTAGGGATCATCTTTAGCCTACGCCAATCCTAACCTGGACCTTAAGAGGTGAAAAGCAAAACTGATCTGAGATCAAGTCTTTGAGACCACTACATTCTGGGTATGTGCTCAAACCTGTTTTTGACTGACTCAGTCAGCCCATTTGCAATAATGTGCACTCACACATACCAGTGGCTTGAGTTTGAGCTCCAGATGCTGTCTGAAAAATTACCTGGCTGACAGACACACTCCTAACATTTCCAGGGGCAGGGAGGGGTCGACTCGGGTGACGTCTCATGCAGTGCTTTGGAAgtcccacctctcccctccccatttTCCCCCTCGGCGGACAATGACACAGCTGGTTTTTCTAGTGTCAACAGATGAAGAAAGAGGGCCAGGAAAAAGCCACCAATCATTCCTCTAGCTAGCTGTTTTAAGTGTTCTGAAACTATGCGCTCATGGGACTGTTTCCCCCAACACACCCAGCCCTGGGtcttgttcattaggcaccaaacagactgaaacaggaagtCCCTACCTGGAGTTGGTccaatacataaaaaataaaaaaaaatctaaaataaaaaaACGCTTTAAAGCTGTTTGCTAGTGTGCCCCAATGAATAGGACCCtgggctaggctacctgccaactgCAACTACTGCTGCCTGCCCTGTTCTGTACCAGACTGACCACTGATGGCAGGGTAAAACAAACCGTTGAAGGCCAGACATGGAATTAAAATCTCAACGTTAGTTTAAAGCGTG

Function

GO: NA

KEGG:

id description
K02370 EXTL3; alpha-1,4-N-acetylglucosaminyltransferase EXTL3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU792037 lncRNA upstream 717 31054231 ~ 31054493 (+) True G695826
TU792034 lncRNA upstream 4044 31050451 ~ 31051166 (+) True G695823
TU792030 lncRNA upstream 7787 31044238 ~ 31047423 (+) True ndufb1
TU792019 lncRNA upstream 22428 31031017 ~ 31032782 (+) True G695809
TU792006 lncRNA upstream 43426 31006237 ~ 31011784 (+) True G695796
TU792040 lncRNA downstream 3406 31101369 ~ 31101794 (+) True G695828
TU792041 lncRNA downstream 4065 31102028 ~ 31102353 (+) True G695829
TU792109 lncRNA downstream 39683 31137646 ~ 31185372 (+) True G695887
TU792147 lncRNA downstream 113506 31211469 ~ 31216638 (+) False G695922
TU792148 lncRNA downstream 113506 31211469 ~ 31216638 (+) True G695922
NM_001165090.2 mRNA upstream 7789 31044027 ~ 31047421 (+) False ndufb1
XM_021612290.2 mRNA upstream 177015 30809489 ~ 30878195 (+) False LOC110529772
XM_021612292.2 mRNA upstream 177015 30869079 ~ 30878195 (+) False LOC110529772
XR_005052853.1 mRNA upstream 389752 30655621 ~ 30665458 (+) True LOC118965506
XM_021612288.2 mRNA upstream 791726 30251466 ~ 30263484 (+) True LOC110529770
LOC110529228 mRNA downstream 31547 31129510 ~ 31140471 (+) True LOC110529228
XM_021614359.2 mRNA downstream 47571 31145534 ~ 31146912 (+) True LOC110531085
XM_036985276.1 mRNA downstream 59909 31157872 ~ 31204182 (+) False si:dkey-174m14.3
XM_036985277.1 mRNA downstream 70026 31167989 ~ 31204182 (+) False si:dkey-174m14.3
XM_021612298.2 mRNA downstream 70514 31168477 ~ 31204182 (+) False si:dkey-174m14.3
TU790056 other upstream 1262463 29790997 ~ 29792747 (+) True G694036
TU789468 other upstream 2116937 28930760 ~ 28938273 (+) False cdca4
TU789469 other upstream 2116937 28935489 ~ 28938273 (+) True cdca4
TU789102 other upstream 2349458 28704850 ~ 28705752 (+) True G693207
TU789022 other upstream 2496837 28495285 ~ 28558373 (+) True btbd7
TU796067 other downstream 3029630 34127593 ~ 34128301 (+) True G699605
TU797136 other downstream 4356885 35454848 ~ 35462040 (+) True LOC110529856
TU797266 other downstream 4515201 35613164 ~ 35614666 (+) True G700685
TU797474 other downstream 4806086 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 5602475 36700438 ~ 36700739 (+) True G702415

Expression Profile