RNA id: XM_021614359.2



Basic Information


Item Value
RNA id XM_021614359.2
length 1075
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC110531085
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 31145534 ~ 31146912 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGTAGATATGTGGCGGATCCTGCTTTAATGACCATCACCAAGCCAGAACACTTCGAGGCCAACCCTCAGAGCCAGGCTGGCAGTTGGCCGGTGGCTAAACCTCAGCGCCCAGCACCCCCAGTACAGAAAACACGAAACAGTGGAGGCTGGCTCAGGTGGTTCTTCGGTGAAAAGGAAGAAGTTCCTCAGATGACAAGGATACCAGATGACAAGCCTAATTCTATGGTCTGGGATCAAAACCTGCACAGATGGGTTGACGCAAGTCCCATGTCCAAGACTGAGAACAAGCCTGTTCCACCTCCTCCCCCGATGGGGATGTATCTGGGGAACTCTAGTCTCCCCAAAGGAGTGAATCCTTACTCCATGAAAGCAGCAGATCAAGGAAGCCTAGGGGACAGGTATCCCAAGCTATTGTACCATGGTGGGATCACCACAACGCCTCCATACCAGGGTCCTGGATCGCTACCTGCCCAGCATGCAACACTCATGGCACCGATGACTGTGCCATTCGATGTTCACAGGCAGAAACTTGGCCCAGGCACTCTACCCTTTTGAGGTTCGACACTGAACAATCCTTCTGCAACGATTCATTTAATTAGCTTTAATATACATCAACGCTTGGCTGAAGTTGCAGTGATGTTTAAGCTATTTATTTTTGTCTCACAGGTCGTTTTCCAGGAGGGATCATTTGATATTTCAGCATTTTAAAAGACAAAATAAAATAAGATTTCGGGCTTTGAAAAGTTATTAAAAGTCTGTATGTTCACGTAGCTTTGATATGTTTTCCGGCATCCTTTACAAGCCCATCACTTGTGCATTTCTCTATGTTACATACTTTACAGATGGGTATATTATTTATACATATGtttttcaaaatatatttaaaaaataattcatCTATTTCATAAACATAATATCAAATGTAAATAAAGTGCATTTTAAATTTTACACCATATATTTCAATATATGACTTTACTGCAGGCCTAGCGTTGTGGGTGGGCCTTAGGGAGCCATGCTCGCCCTACCGCACCTCCTAGCCCGTCCAAATAAAATACATGGTTGAATGAAACTTTAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU792041 lncRNA upstream 43181 31102028 ~ 31102353 (+) True G695829
TU792040 lncRNA upstream 43740 31101369 ~ 31101794 (+) True G695828
TU792050 lncRNA upstream 73001 31063787 ~ 31072533 (+) True G695838
TU792037 lncRNA upstream 91041 31054231 ~ 31054493 (+) True G695826
TU792034 lncRNA upstream 94368 31050451 ~ 31051166 (+) True G695823
TU792147 lncRNA downstream 64557 31211469 ~ 31216638 (+) False G695922
TU792148 lncRNA downstream 64557 31211469 ~ 31216638 (+) True G695922
TU792155 lncRNA downstream 71801 31218713 ~ 31219120 (+) True G695926
TU792218 lncRNA downstream 197413 31344325 ~ 31344555 (+) True G695989
TU792222 lncRNA downstream 202300 31349212 ~ 31349433 (+) True G695993
LOC110529228 mRNA upstream 5063 31129510 ~ 31140471 (+) True LOC110529228
XM_036985275.1 mRNA upstream 47571 31055210 ~ 31097963 (+) True LOC110529776
NM_001165090.2 mRNA upstream 98113 31044027 ~ 31047421 (+) False ndufb1
XM_021612290.2 mRNA upstream 267339 30809489 ~ 30878195 (+) False LOC110529772
XM_021612292.2 mRNA upstream 267339 30869079 ~ 30878195 (+) False LOC110529772
XM_036985276.1 mRNA downstream 10960 31157872 ~ 31204182 (+) False si:dkey-174m14.3
XM_036985277.1 mRNA downstream 21077 31167989 ~ 31204182 (+) False si:dkey-174m14.3
XM_021612298.2 mRNA downstream 21565 31168477 ~ 31204182 (+) False si:dkey-174m14.3
XM_021612302.2 mRNA downstream 21565 31168477 ~ 31204182 (+) False si:dkey-174m14.3
XM_021612303.2 mRNA downstream 25790 31172702 ~ 31204182 (+) True si:dkey-174m14.3
TU790056 other upstream 1352787 29790997 ~ 29792747 (+) True G694036
TU789468 other upstream 2207261 28930760 ~ 28938273 (+) False cdca4
TU789469 other upstream 2207261 28935489 ~ 28938273 (+) True cdca4
TU789102 other upstream 2439782 28704850 ~ 28705752 (+) True G693207
TU789022 other upstream 2587161 28495285 ~ 28558373 (+) True btbd7
TU796067 other downstream 2980681 34127593 ~ 34128301 (+) True G699605
TU797136 other downstream 4307936 35454848 ~ 35462040 (+) True LOC110529856
TU797266 other downstream 4466252 35613164 ~ 35614666 (+) True G700685
TU797474 other downstream 4757137 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 5553526 36700438 ~ 36700739 (+) True G702415

Expression Profile