RNA id: XM_021612298.2


Basic Information

Item Value
RNA id XM_021612298.2
length 3683
RNA type mRNA
GC content 0.52
exon number 7
gene id si:dkey-174m14.3
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 31157872 ~ 31204182 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctctattatccctctctttctcctccctctctccaccctctctccacttctcctctcctccgtaaCTGGGGGTTTCTCCACGCTTATCGGAGTTGAGTAACCAGCTCTGGATCACACAGCAGGGCTATCACCAGAAGCcctagaatacacacacacacacacacacacacatatacacacacacacacaaatatatacacacacacacacacacacaaatatacacacccacacacactctcacacacacacacacacacacacacacacacacacacacacacacacacacacaccctccgcACTGCTCCCCTCACACATACAGCGAGGAGCGAAGGCAGAAGGCAGCAGGCAGCCAGGTTTCTGTGTCATCATCACCAGCACCAGCGATTCACAATGAGGCTCTGTGTGAGCACCAGCGGAAGGAACAACAGAGGTAGAAAACTCACTCAGACAACTCACTCAACAGGGCAAACTTAACTGACCCCCCTCCGGCGAGAAAAATAGGCCCCACTCCCTCCGACGATTCGAAAACAAAAAAGCACATGAGAGGGAGCGAACACAGCAGACAAACCATGAAAAAGATATATGTCGGAAAAACGGCCCTAAAAGTTTCCCGAAATGGCAGTAAACATCAGAAAAAGAGCTCTTTGCAGGAGCAGAAGGAGGACCTGCGGAAGCGTCTGTCCTACACCACCCACAAGCTGGAGCTGCTAGAGAGCGAGTTTGACTCCACCCGACAGTACCTGGAGACAGAGCTACGCCGCGCCCAGGAGGAACTCGACAAGTTCACAGACAAACTacgcagAATACAAAGCAGCTACTCAGCACTGCAGAGGATCAACCAGGATCTGGAGGATAAGATCCATAGAAATTCTCAGCACCATGACGACGAGAAGAGAGCCCTGAGCAGAGAGATCATCGTGCTCAACAACCACCTGATGGAGGCCAAGCTGACCATTGAGAAACTGAGGGAGGACAATGATCTGTACAGGAAGGACTGTAACCTGGCTGCCCAGCTGCTCCAGTGCAACAAGTCCCACTACAGGACCCAGCTTTCTGAGtTGCCGGCTGAATTCCAGGAACGCGTGACCATGCACATGGAGGGCACACCTCTTTGCCACACTGCCTATGCCGATTCCGTCCCTGCCTCCGTCATCGCCAAGGTGCTGGAGAAGCCCGACGAGGCCTGCAGCGGCAGCCAAGCCTCTAGCTCGCCTAGCCCCCAGCCCCAGGACCAAGGCTTTCTCCTGGACACCCTGGACAGAGGTGAGCGCCTGGGCCTCCGGGCAGCATACAAGTCAGACCTGTACAGCAGCGACACAGCTCTGTACTGCCCAGTCGATCAGAACCGTGAGCGCAGGCCAAGCATGGACCTCCATGGCCAGAGAAAGCTGCTCTACGGGCCCCAGAACTCCACAGATAGTAACCCAGATGAGGGTCCCTTGTTGGGGCTGAGGTCTGGCTTCTCCCAGGAGTGCTTTGCCAAGTTCCCCACCTCTCTGGGCCCCACCTCGGGCAGCTCCTACTCCAGCTTCAGCGGAGGGGGCTCGGACGACAACAAGGGCAACGGCCCACCAAGCAGCACAgcctcctctccccaccaccaCTCCCTCTACATGGACTGGAGGAATGGGGGAGACTATGAGAGGAAGAGTGACTCCTCCTGGGAGAGGGACAGTCCCGGCGGGGGCGGCTTCGCCAAGGTCCACGCTGTCTTCCAGCAGGCCGGCGGAGCACACCACCAGAACGGCAGCTCGCCTGTCTACAGCCGCACCATGTCCTCGTGCTTCAGCGAGCCCTACgaacccctccctccttcctcctcgcCAAGCGTCGTCTATGGAGACAGCCGCCGGGGCAGCACACTGGCGCCCGAGGAGGAGGAGCTGATTGGTCGCTGGAGGCAGCTGAGTGTGGAGGACCTAAGCGCCCACTCGTACCACTCGCCCGGCCGGGCCTCGCCCTACAGCTTCTCCGAGCAGCACTTCTCCGTTCGGCCCGCCAAGATCCGCCTGGGACCCCTCTACAGCAGCTTCCAGGAAGGGGCAGACTTCTACCACCAGGCAGGGGTAGGACCCATCATGGAAACCCCAGTGTGCTTCTCCACGCCCAGCCCCCAGTGTAGCCCTGTGGGGGGACTCCGTCAGTCCCATCCGTCCCACAGCCAGCAGGCCCACCAGACCCATCTCTACCGGGGAAAggaggacagccaggagtcagAGCACAGCCTCTACCACTCAGCAAGCTCCAATGACAGGGAGGGTAGTGTCGGTGTAGCAGGGGccgggggaggaggtggagggcagAACAAGGAGTATGAGGACGTCAGCCCAAACAGCTCCACTGAGTCCCTAAACCAGAGGTCCCTGGAGATGGCTGCCGAGCTGCAGCAGCACTACCAGACCGAGATGCAGCATCCATCGCCTCCCCAGGGCAGTCCACCACCGCCCCCGCTACCACCTTGTCCCCCTCCCCCGCAATACCAAACATTTGGCACGTTAGGACTCTCCAGAAAGGACAGTCTCACCAAAGCCCAGCTGTATGGAACCCTTCTGAACTGAGAGAAGAGGGGATTCTCGTCCTCTGACTTActgttctttctctttcttcatcTCTTTCCCTGGTGGGATGTGAGGTGAGAGGTCTTGGTAAATCCAGCAAAACACATTGATTAGTGTGAGTCTAGCCGTTCAGTTGAAGGACATTCATTTTGATAGGACATTTGGACGATACAGTAGGTTAAGCATGAATTCATCAGATTGTTGCCACAGCTGTGAAAAACTGACAAAAGTGTGGTTCGCATCACTACAATGAACGTGTAAGATTGTCTGGGTCAGGTGAATTGACAATTCATTACTGTGCCAAATGAGTGAGGAATATAGGAAAAGACTCTGCTACCTTTGGTACATTTGGTACATAAAATAGCATTTGGAGGTACCAGAGACCACAGTTGCTCCATGTGGACGAAGGAAGTATTTAAAGTAACTGTTGAAATATATGAATATATTTAATTACAACTACAACAATTGAGTGTTCAAAGACATATTTTGTTTGTAGTTGCATTCCAAAAGAAAATATAAAACTGATGATTGTAAAGAAATGACTACAATTCAATCAGATGTGGACACCAACACATTGTAAATATGTCTGGTGAAGAGCATCTGCAAATCGAAAAAGAGATAGTTGGAATGTTAAAGAAGACTGTCAAAATTGCACATTGAGATTTCTTTGTCAATCACAGGCTGAATACTGAATACTGTGCTGCATTTCTGCAGAGTAAACCATGTATGACAATGGGGCATGGGTTAAAGTTGCAGCACTAAGAGATGTTTTTACTCAAAAATGCCCCTAGCCTAAACCCGTTTGAGTGCAGCTCCATTGATTCGttcagtttttgctttgacacCGTTTTGAAATATCCAGAGCGCTTAAAGAGACCGGTCGAAGTATGTATCATTTTGCTACTGATGGACTTCTTTTGAGATGTAAACATTAGTCTTACCCGTTGATGTTATTTTTGCTCTATAACCCTTGGAGACATTTTCCTGTCCCACTCTACCTCAGATGCCCACACCCCAATCAAGCAACCACAAATCTGTTTCTATCACACAAAGACGCATGTTTCTATATTTCTGTTGTGTTTCATTTAACCTAATAAAGCACAAACTACACAAGTCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU792041 lncRNA upstream 66124 31102028 ~ 31102353 (+) True G695829
TU792040 lncRNA upstream 66683 31101369 ~ 31101794 (+) True G695828
TU792050 lncRNA upstream 95944 31063787 ~ 31072533 (+) True G695838
TU792037 lncRNA upstream 113984 31054231 ~ 31054493 (+) True G695826
TU792034 lncRNA upstream 117311 31050451 ~ 31051166 (+) True G695823
TU792147 lncRNA downstream 7287 31211469 ~ 31216638 (+) False G695922
TU792148 lncRNA downstream 7287 31211469 ~ 31216638 (+) True G695922
TU792155 lncRNA downstream 14531 31218713 ~ 31219120 (+) True G695926
TU792218 lncRNA downstream 140143 31344325 ~ 31344555 (+) True G695989
TU792222 lncRNA downstream 145030 31349212 ~ 31349433 (+) True G695993
XM_021614359.2 mRNA upstream 21565 31145534 ~ 31146912 (+) True LOC110531085
LOC110529228 mRNA upstream 28006 31129510 ~ 31140471 (+) True LOC110529228
XM_036985275.1 mRNA upstream 70514 31055210 ~ 31097963 (+) True LOC110529776
NM_001165090.2 mRNA upstream 121056 31044027 ~ 31047421 (+) False ndufb1
XM_021612292.2 mRNA upstream 290282 30869079 ~ 30878195 (+) False LOC110529772
XM_036985279.1 mRNA downstream 15973 31220155 ~ 31307462 (+) False rad51b
XM_036985280.1 mRNA downstream 15973 31220155 ~ 31307462 (+) False rad51b
XM_036985281.1 mRNA downstream 15973 31220155 ~ 31307462 (+) False rad51b
XM_036985278.1 mRNA downstream 21290 31225472 ~ 31307461 (+) False rad51b
XM_021612305.2 mRNA downstream 21294 31225476 ~ 31280441 (+) False rad51b
TU790056 other upstream 1375730 29790997 ~ 29792747 (+) True G694036
TU789468 other upstream 2230204 28930760 ~ 28938273 (+) False cdca4
TU789469 other upstream 2230204 28935489 ~ 28938273 (+) True cdca4
TU789102 other upstream 2462725 28704850 ~ 28705752 (+) True G693207
TU789022 other upstream 2610104 28495285 ~ 28558373 (+) True btbd7
TU796067 other downstream 2923411 34127593 ~ 34128301 (+) True G699605
TU797136 other downstream 4250666 35454848 ~ 35462040 (+) True LOC110529856
TU797266 other downstream 4408982 35613164 ~ 35614666 (+) True G700685
TU797474 other downstream 4699867 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 5496256 36700438 ~ 36700739 (+) True G702415

Expression Profile