RNA id: XM_036985280.1


Basic Information

Item Value
RNA id XM_036985280.1
length 3383
RNA type mRNA
GC content 0.46
exon number 11
gene id rad51b
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 31220155 ~ 31307462 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGttcaatatattttatttgaaagaatgtgttttgttttctatTGATTCTTCATGAGAAATGCATCAAGCTGACCCAGGCCTAAAAAAAAGACTGCATCGGGACCCAGTGCAGTGGTTTTGACAGTCCCATATGACTACATTTACCAAAATCCAAAGCGAAGTGGCGGTATATGTCAGACGAGTTTGAAGTGGACGGAGTACAGGGCTTAACATGTCTCTCGAGGAGGCTAAAAAGAGATGAAGGCTTGGAAAAGTTTAATATTTTCAGAAGGAGTTGGGTAATTGGTTAAGGGAGGAGGattggagggaaagagagcggaGGTTGAAaagactgagggaggcagaggatGGGTGTGAATCTGTTGAAGCCAGTAATAACAACGGGGAAGATTGGTGTCAAGTTCAAACAGAGTGAGCTGGATGACAGTTTAAGTTCTGGAGGTGAAATGGAAAGGGTAGAAGGTGTTGTGAGGAGCTTGGCGCCCGAGCCTTGCATTGATGGACATGGTTATGATAAAGATAAGTTTGGTCCAGTGCGAGAGATATTTTTGAAGAGGGTGGAACCAGGACTTTTGGCTGATGCATGGGTGGTTTCAGGTTGGGTGGAATAGATGGTGGGTGCTGTTGAGTCGGTGAAGGACCTGCTGTCCCTCACACCTCTAGAGGTGATGCGCCTCGCGGGGCAGAGTTACCAACAGGTGTTGATGCTACTTCAGTCAGTCAGCAAGGCCTGTGCCCCCTCAATGACCACGGCATTGGAGGTGTGGAAGCAGAGGGCTGACCTGTGTTTCTCCACATCCCTACCTGCCCTGGACAGACTGCTTCAGGGAGGGCTACCACGGGGGACACTCACAGAGGTGACTGGCCCCTCAGGTTGTGGGAAGAGCCAGGTGTGTATGATGCTCAGTGTGCTGGCCACTCTGCCAAAGTACATGGGTGGCCTCGACAGTGGAGTTATCTACATAGATACAGAGGCAGCTTTTTCAGCGGAGAGGTTAGTGGAGATTGCTCAGAGCAGGTTTCCAGACTACTTCTGTGAGAAGGAGCGTGTGTTGGAGATGGCTGGACGTGTCCACCTTTTTCAGGAGCTCACGTGTCAGGATGTCCTGGACAGACTGGAGAGGCTGGAGGAGGACATCATCTCCTCCAAGGCTGGGTTGGTGATTCTTGACTCGGTGGCCTCAGTGGTGAGGAAGGAGTATGACACAACACTTCCTGGGAACCTCAGTCACCGCAGCAACCTGCTGGGCCAGGAGGCTGCCACCCTCAAATACCTGGCTCAGGCCTTTCACatccctGTGGTCTTGACCAACCAGATCACGACGCATGTGGGCGATCGAGGAGAGAGAGGCGCTGCGTCATTCAGGGGAGCATCCGATGAGAGGGATTCTGGGTATGTGACGGCGGCGCTGGGGAACACATGGAGTCATAGCGTCAACACCCGCCTCATTGTCCAGTATGTAGATGCACACCAAAGACAGaTTGTGATAGCGAAGTCACCTGTGGCCCCATTTGCTGTTCTAAACTACACAGTCCAGAAGGAGGGTATCCGTCTAGAGGaTGTGCGGACCAGAAACCCAGTGACAACACTCGGGTCTGTAGCTGTCATTTCCCGGCGGGAAAGAGAAATGATCAACCACACCCTCAGCAAttcttCCCGGTCTACCTCTGGTCCCTGTCTCATCATCTTGCAcctctgtcctggattccccactctactactcccttcgattcccctccggacctgcttaccctgtctcaaccccctcgctccagcctcagcctccgcacctggtttccaGCAAGTCGCCCAAGCTTCCCCTAACCTgcactccatctcccccctgtgTTTCAATGAATACCTTGtttacttcatcccagtctcctcgtctgagtctgctcttgggttcccctgttccaCTCCGCGTAACAGTGCCTGTGCAGATGTATGCATGTTCAACTAGTTTACCCTAATGTTCATGTTACACTGGCACAGATCAACTGTTGTTCAAActgtagaatagagtataattgATTTCGTTTTTTGTCTTTAAGGCAATATCATGTGGTGCCTGGGCTTCTTCCTGCATTAGAATCTAGATACAGAAACAGAATTCCTTTGCCTGTGTGTCATTGTAGCAGGACTGTATCCCATGAAATGTATCCCACTCAAGCAGATTACTCATGAGAAGCTGAATGGCAGCACTGCCATAACACTCCTCCCACAGTTTTAGAAGTATTCCCTGAACTTACTGTGTTTTTTTCGAATGACAGTTTCATTATGACCTCTCCCATCATCTGCTGATCACCAGTTATCGTAGTTAAAGATTCTTACACCAGATTTAACCAAAGATTTTTGGTATCCATTACTGGGATTTACAAGATAGGTACTGTTTGGTTTAGCACAGAGAATTTTCAACCAACCTTACTGATGCCGTCTTTGTCTTAATTCAGGGAAACAGGAGTCTCATAAAATGTCTGTGTCCAGTTGCAGGGGGTCAGTTTGAATTGCTCCGTTATTAAAACAAAAATGGTTTTGCTCCATAAGTAATCCAACAATATGTGCGCCTCCATCATGTGTATTTCGAGTTTTCTCACTCATTGATCGAGACTAAGTCTCTGCCATCATGACACAAAGCACTTTGAGGAGGACACCCACATGTCTCAATCAATGAGAGAAGacttgaaatagacaagatgTCTGCAAAAATCTTTCGGTAAATAACAATACCTCATGTaaccaggggtgaaagtaaggtGGTATGCTAAAACGTCGGCCTATCACAATTAATACAACATACCATTATTTAACATTACTGTATGTCAGCTGCATGAAAAATGTGCGAATTGACTGGAAACTGGGTGGTATACGCTCCAAATTGGGTTGTGGTTTGAGGAGCACACTTACATTTTATCAAGGCGGGAAAAAAATTAAATTAGAAAATTAAAATCTAAATTATTTCGCAGTGCTTGCTGCAAATACCAAATAGATGAGTGTTGAGTTgcgactgtcagtgaaaagcagagACCCAGCCAGGCATATCGcaatatttaaaaatacaatCACGAAAAactgtttggaaagcaaatggctattgCTGTAAGAGTTGACATGAAAAGACTCCATTTTGTCTTTTAGTTATCAAAATTCGTAATTTAATTCAGCCAAGAGTAGCCTATCTTGTTGGCACCAGGGGAGAACATCGGCCGTATTGCCGGTGAGTGTGCATATTCACTGTCTTTATCATTGGGTCGGTGccacttttgtttgtttgtgggcAATAATTTCCTCCTCCAGGTTAGATGGATGTCATATTGTATTTGTGTCACCCCTTTTCGTAGGACCATTATATGGATCAGACAACATTGTTTTTAATGATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU792155 lncRNA upstream 1035 31218713 ~ 31219120 (+) True G695926
TU792147 lncRNA upstream 3517 31211469 ~ 31216638 (+) False G695922
TU792148 lncRNA upstream 3517 31211469 ~ 31216638 (+) True G695922
TU792109 lncRNA upstream 34783 31137646 ~ 31185372 (+) True G695887
TU792041 lncRNA upstream 117802 31102028 ~ 31102353 (+) True G695829
TU792218 lncRNA downstream 36863 31344325 ~ 31344555 (+) True G695989
TU792222 lncRNA downstream 41750 31349212 ~ 31349433 (+) True G695993
TU792224 lncRNA downstream 43228 31350690 ~ 31351223 (+) True G695995
TU792228 lncRNA downstream 51693 31359155 ~ 31359542 (+) True G695999
TU792229 lncRNA downstream 52894 31360356 ~ 31360605 (+) True G696000
XM_036985276.1 mRNA upstream 15973 31157872 ~ 31204182 (+) False si:dkey-174m14.3
XM_021612315.2 mRNA downstream 31770 31339232 ~ 31343865 (+) True LOC110529782
XM_021612317.2 mRNA downstream 61290 31368752 ~ 31376588 (+) True psmc6
XM_021612316.2 mRNA downstream 73645 31381107 ~ 31393074 (+) True ddhd1b
XM_036985286.1 mRNA downstream 86732 31394194 ~ 31402564 (+) False stxbp6l
XM_021612319.2 mRNA downstream 86733 31394195 ~ 31402564 (+) True stxbp6l
TU790056 other upstream 1427408 29790997 ~ 29792747 (+) True G694036
TU789468 other upstream 2281882 28930760 ~ 28938273 (+) False cdca4
TU789469 other upstream 2281882 28935489 ~ 28938273 (+) True cdca4
TU789102 other upstream 2514403 28704850 ~ 28705752 (+) True G693207
TU789022 other upstream 2661782 28495285 ~ 28558373 (+) True btbd7
TU796067 other downstream 2820131 34127593 ~ 34128301 (+) True G699605
TU797136 other downstream 4147386 35454848 ~ 35462040 (+) True LOC110529856
TU797266 other downstream 4305702 35613164 ~ 35614666 (+) True G700685
TU797474 other downstream 4596587 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 5392976 36700438 ~ 36700739 (+) True G702415

Expression Profile