RNA id: XM_036985285.1


Basic Information

Item Value
RNA id XM_036985285.1
length 3283
RNA type mRNA
GC content 0.46
exon number 2
gene id zfp36l1b
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 31292803 ~ 31298521 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAGGGCAGACAGTTACTTGTGTCAATCACACTCAGGCCCCTCCCAGCAGACATAACCATGCATAGAGCTTTTAAAAGGGAACTGCGCACAACTGTTGCAGGACAGAGGGGGCTCTCTGCAGGGCAGAAAGAACACTTCAATCTGGACTTACCACCAGCCCTGTGCTttagataaattattttatatttaCTTTACAGTATCCACTCAGCAAAAATGACTGCAAGTATCGCTTCTCCTTTCTTCGACTACAACGAAATGAACAAGAACAATAAGATGtttaactacaacaacaatacTTTCGGTGGGCCCCACTCCACATCTGTCCCAGTCTGCACTGGTGCCAACAACCCTCCCTCTTGCCCCCCCACTGGTTCCCTGCTGGACAGGAAGGTAGTGGGGGCCCCCTCTGCAGGGGGCAGTGGGCTGTTCCAGCGCCGCCACTCTGTCACCCTCCCCAACACCAAATTCAACCAGAATCAGTTCATCAACAGTCTCAAGGCTGACCCCTCCTCGCTCCTGATTGGTGGTGGCAGTAACAACAAGGAGAACCGCTTTCGGGACCGCTCCTTCTCCGAGACAGGGGATCGCCTCAAGCCGGGCAGCCAGCTTCAGTGCCTTGGCGGCGGGCagggccagcagcagcagcaggtcaACTCCAGCCGCTACAAGACGGAGCTGTGCCGGCCCTTCGAGGAGAACGGCACTTGCAAGTACGGCGACAAGTGCCAGTTTGCCCACGGCATGCACGAGCTGCGTAGCCTGAGCCGCCACCCAAAGTACAAGACGGAGCTGTGCCGCACCTTCCACACCATCGGCTTCTGCCCCTACGGCCCGCGCTGCCACTTCATCCACAACGCAGAGGAACGCCGCGGCCCGCCGCCACCGTTCTCCACTTTCAACAAGATGGAGCGCCCCCGCCTCCAGCACAGCTTCAGCTTCGCCGGTTTCCCCAGCCAGGGCGGTCTACAAGACAGCCCCACCTCGGTCACCCCGCCACCCATTTTCTCCACAGAGGACCTGGGCGAGTGGCCCAGCAACCCCTTCACCTACTCCAGCCAGGAGTTGGTCAATCTGTTTGGCCCGAGCCTAGTAGGGGGGCCCCCTGTCTTGGAGCCCAACCTGCTGGCCCCGGCGCCGCACTCCCCCAATACCCCCTGCTTCTTCCGGCCCATGTCGGAGTGTCCCCCCAGCCCCCCGGACTCTCTCTCCGACCAGGAGGGCTACCAGAGCAGCCTGGGCAGTCAGAGCGGTTCTGAATCCCCCAGCCTGGATGCCTCGCGCCGCCTGCCCATCTTCAGCAGGCTCTCCATCTCTGATGATTAGAGAGCCTACACCCCCGGTGCCTGGGATGGATGCATGGAGTGAGAAAGTGAGTGCCTGTCTCCCCACGGTCCTGTCCCCCTCGTCTCCTGGCCTTGTTTACAACCCAGAAGTGGACATGATTCTGTGTAGCAGTGTTGTAGCCACTGAGTCCAATCAGAAAACTCagctaccccccccccaccccatctcaGATGCCTCCAATTAGCCAATCGAGGTGTTTTTGTTTTACCCAAACAATCATTCAGCCAAGTGGTCACTCAAGAATCGTGAGTAGCAAGTTGGCCCTGGGTGAAGTGCTACAATAACGGTGAACAGTAGAAATCAGAGGGGATGGATAAGGTCTGTGGGAAGTTTCAGTATGTCCCAAGGCAGGATTTCCCTGTCGTTTTGTGTGTAGCGGTGCTGCATATCTTCACTTTGCCATTGCTGCCTGTGCCACAGCTATCTTCAAACATCCCATACTTTTACATCTCAAGAGGACTTGTGACAAATTTGTGCTCCATTTTTTAAAAAGGGTCACATTTCTCGTCAAGTTAAACCATAAAAAAAAATGATTGGACGACCAGATTAAATGAAGTGCCTTGGTGTTGTCCGATCAATGTGCGGGACTACAATTGTTACTTTTTCCACGTCCTAATGattgcaaaaaaatatttttcagcttttttttttttttataaaaaaaagtatattattaTGAGGACTAGACAAACAcaggtgtttaaaaaaaaatttttttttagaaTCAGGGCTGGAAGAGTTTATCATTTTCTTTTGGCGCTACTAAGAATCCTTAGTAAATGTCTACTGGTCTGTTTGGTTTCTTTAGTTGTGTGGAAGGAGTAGGACTGTTCATCAATGTAAACTGGTCGTTAAACATTCATATGTAAGCTTGGCCTgtcccccccccttctcctagcCCCCACTCGGCTCAATAGCTGACTGAGATGACACCTCAGTCACCGCTGTCAAATCACATGAGCGCCATGCTCTCCCATCGATTCCACCTTGTTCAACTATATTGTTTTGTAAAACCTTCAAACGGAAGGTTTGCTTGTCACTGCTTATTTAACttatcaaaatgtatttattgctGATcttaaagcatttttttttattttgtatttatctgGATAATGAAACGATAGAATATATTTTCTTTTATGTTAAATTATGATCTTCCGTATTAATCGTAAGATTGTGaagactttttttttttctttttttttacaggtAATATATTATACTGCAATGACATTTTTTGTTTTGTAACTACACTTTGATTTATTTTGAAAGTGAATCTTAATTTAAATACAAAAATGCAAATGtttttgcgtttatatttatTGTTTTTCCTCTTCCCTGATATTGGATTGTGGTTTTCAGGTTCTCTATTTTGATGTCTTAATTTCTCTTCCAGTTGTGGTCTGCAGCAGCCCTCGAAGGCCCTCTAGAATGTAGACGAAGTTGAGTAACAGTCCTCTTCCTGTTAATTCACTGTCCCTTTGACTgggaaaaaaatatacattttagtaTTTAAGAAGTCACTTAGCCTATATAACCAGCAGTTATGCTGTAAATGACAAATAGAAAGCTCTTATTTTAATTAGTTATGGACGCTCACCTATTCCGCAATACCATGCATACATTTACTAGCACTTTTAGTTGATGTGTTGTTGGACCACTCGTTCCCATAAGTGCCTATCGAATACATTCCAGGTATCCCCAAGTGTTGTGCCTTTATCACATGTTTTATAACACAGCAGATTTAAGCCCGAACTTGTAGTTAAGTATAAAGGTTAACAGGATTGACACATGACATGAAAAGCAACAGTTGAATGTATTCTTTATAGCAGCTGTTGCTGTTCACTACAGTAGTTTATTTGTtctcatgtatttttttttttaatgacagaTTGCAGTTTAAACTTAACTAATAAAACCCATATTTCTATTGAA

Function

GO: NA

KEGG:

id description
K18753 ZFP36L; butyrate response factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU792555 lncRNA downstream 68077 31220000 ~ 31224726 (-) True G696298
TU792549 lncRNA downstream 76198 31209003 ~ 31216605 (-) True LOC110529778
TU792544 lncRNA downstream 88638 31201574 ~ 31204165 (-) True G696289
TU792479 lncRNA downstream 192024 31098780 ~ 31100779 (-) True LOC110529227
TU792478 lncRNA downstream 194873 31094348 ~ 31097930 (-) True G696224
TU792619 lncRNA upstream 47439 31345960 ~ 31346302 (-) True G696353
TU792622 lncRNA upstream 49574 31348095 ~ 31348326 (-) True G696356
TU792624 lncRNA upstream 51076 31349597 ~ 31349864 (-) True G696358
TU792625 lncRNA upstream 52221 31350742 ~ 31351338 (-) True G696359
TU792631 lncRNA upstream 55678 31354199 ~ 31354532 (-) True G696365
XM_021612304.2 mRNA downstream 76038 31209003 ~ 31216765 (-) False LOC110529778
XM_021611348.2 mRNA downstream 172303 31099526 ~ 31120500 (-) False LOC110529227
LOC118965648 mRNA downstream 176056 31116578 ~ 31116747 (-) True LOC118965648
trnaa-ugc-25 mRNA downstream 222386 31070343 ~ 31070417 (-) True trnaa-ugc-25
XM_021612296.2 mRNA downstream 241081 31047510 ~ 31051722 (-) True LOC110529775
XM_021612318.2 mRNA upstream 78071 31376592 ~ 31381078 (-) True cgrrf1
XM_021612321.2 mRNA upstream 130003 31428524 ~ 31431727 (-) True LOC110529787
LOC110529789 mRNA upstream 133871 31432392 ~ 31435370 (-) True LOC110529789
XM_021612322.2 mRNA upstream 154813 31453334 ~ 31458247 (-) True LOC110529790
XM_021612323.2 mRNA upstream 188296 31486817 ~ 31503990 (-) True LOC110529791
TU792310 other downstream 437396 30855107 ~ 30855407 (-) True G696073
TU792305 other downstream 445594 30846902 ~ 30847209 (-) True G696068
TU790962 other downstream 1230635 30001763 ~ 30062168 (-) False G694858
TU790963 other downstream 1230635 30038588 ~ 30062168 (-) True G694858
TU789639 other downstream 2333971 28958395 ~ 28958832 (-) True G693665
TU792778 other upstream 178833 31477354 ~ 31478027 (-) True G696499
TU792983 other upstream 359205 31657726 ~ 31679735 (-) True LOC110529793
TU793919 other upstream 915965 32214486 ~ 32217549 (-) False LOC110529804
TU793920 other upstream 915965 32214486 ~ 32217549 (-) True LOC110529804
TU794118 other upstream 1200278 32498799 ~ 32499410 (-) True G697774

Expression Profile