RNA id: XM_036985286.1


Basic Information

Item Value
RNA id XM_036985286.1
length 3478
RNA type mRNA
GC content 0.45
exon number 7
gene id stxbp6l
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 31394194 ~ 31402564 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCAAATGGGATGGCGTCCCAGACAGATTCGCCTTCTCCGCAAGGCTTGCtgttgttgtgtgacaaaacaacaCCGCTATAAGGCGTTGGAATAGTTTGGGTGAGCATTACTGCAGCTTCCCTGTTTCTGCGTCTCGAAGGAGTGAGGGGTAAAACAACAAAACAGATCACTCATCCAATATCCTCCACCCAGTCCCACCATGAATATCCAGTCCGCTATCAACAGGGCGGTGTTTGCTCCCCGGGATGAGAGGATGCTAGTGGCTGTGGAGGTGAAGAGGAGAAAAAGGAAAAGGGTCCCCTTTCTACCCACTGGAGGCAAGGGAGAATACATGACATACATCTGTTTGTCAGTGACCAATAAGAGGCCAGCTCAGCTCCTCATCACCAAAGTCAAGCAGTTTGGGGGCTCCGCCCCCTTCACCAGAAGGTCACAGTGGGCCGTGGAGCAGCTTCGCCAGGTCAACGGCATCAACCCCAACAAGGACTGCCCAGAGTTTGACCTGGTGTTCGACAACGCCTTTGACCAATGGGTGGCCAGCTCAGCGCCAGAGAAGTGCATCTTCATCCAGATCATGTACCACGCCTGTCAGACCTATTGGGAAGGCAAGGAGGGGGTCCCTGGTAGCCCAGCCGGGGACCAGCAGAAGGGGCAAAGAGGTCAAGGGGGCCAGGGTAGCCCAGGGGCCCAAGGGGGCCAGGGTAGCCCAGGGGCCCAAGTGGGCCAGATAGGAGGACCAGTGGCCCAGGCTAGACGGAAGAGCACTGTGGGTCCCAGGCCCCATCATACTGAGTTTGTCAACTGTCAGTCCAAACTCACAGGAGATGCCTGCAAAATGAATCTGGTCCTGTACCGTTGCAAGGTCTTTTTCAATCGCATGAAGAAGGTGATGGTTTCAAACCAAAGCCGTTCTCAGGCTGGAGGTCCTAGAGCAGGACCCAGTGGGCAGcgccctccagggggcagtatgGGTAGTGTAGTCCAGAGGGCCAGCCAGGCCCTGCAGGAGCGTGGGGAGAGACTGGGCCGGGCTGAGGACAAGACGGTAGACCTAATGCACAAAGCCCAGCAGTTTGCAGACACTGCTCACAAGCTGGCTCTGAAGTATTCAAACTAGAGGCATATCTTCCCGTGGAACCGCTCCTggagtctttggcctgaattgaCTTGTTAATTCTATGTAATAACATTTTTACTAATCTTTGACTGAGTTGAAACTAATGGACTAATGTTGGACTGAGTTGAAACCAAGTGGTCACACTGCAATTCCTCTGTGAAGAGTCCTGTCTAGTACTGGGTTATTGCGCTTGCTATTAGGACTTAGACTGTGGACAAGCAACTGTCACTTGTGTCAGAAGGACTTTAAAATGTTTACAGGTGGGGAGGACGGCCCAgttatggacccccccccccccccaggattaAAGAATGACCTTTCACCTCTAGAACAGGACCTGTGGTGTCCTTTCATGGGATAGAGTTTGTATACTGGATGGCAATGTAGTGTCACAATGCTCCCACTGTTTGAGTGTACATGTCTTCCCTGCTTCAGTAGCCTCTTCTCTGATAACAACGATTTTAGATTGTATTGATTAACTTTTGTGTTGTGCGGTTTTAGATATCTTAATATAGATTCATGAATTCACACAGTGAACAGCTGACAAGTGAAGTTGAGAACCTACGTGTCTCCACGAtgaatgtatttctgtttttttttgttttttttgctcatTGCATAAATTATTGCTCATTTATGACTGAATAGGCACACacaaagagcagcttgtgaataTTGGCACGAACCGATGCAACTCGGGTTGCAAATATATTCCTGGTGTTATTATTTTCCAGATTTTTtatctctgcgttgttgggaagggcctgtaaggaagcatttcactgttagtctgcacCTGTATACGAAGTATGTGACGCAACCATTTTGTAGATTTCTTTTTTACAAATTGCACTTTCATTGAATGTTTGAATGGCATTGAATGCATAAGTGTGGCTCTTAAGGTTATTGTCTTCATGGTTGTCAGAGCAGGTGCAGGGGAACAAGGAACACCTGGCGAAATCTTTTCTTTGCATGATTTTGTAATGGTCTTGATTTCTTTGCTCTTTCTAAAGTGGAATATGCACACATTTGCTTTCAGTTTTTTTCCATGCTCAATTCCTCCAGTGCCCTTTCCCTGCTTGTATCAAAACCATTGATTAGTCACCAATCACTGTTCCAAATTCTAGTTAATTTTCCTATTTGATCCTTGCTCTTGTCTTTGTCTAATCGTGTTTGATTAATTGATCCCCTGAATTGTCACTGTCTTGTCACGTATGTCATCTGTTTTTGTCTCTTGTGCCATATCTACATGTATGCTGGTTCCATGTGAAAAGATTTGAGTGTAGCAGTTGGAATGGTGGGTTCATGTATGTAGACCAGGTCTCTTCTAGGTGAGGTCATAGGGAAGGTATTTAGTGTTGACGTGTGATGCACGTCCACTCAGCCGGCTCAATGCGGTAGCAAATTGATCCCGGGGACGACGTTGGTGTGATGAAGTTTCTGATTAACACTGTATAGATACCGTGGAGTTGGCTAGTGATGAGGAGACTGGTAGAGATGAGATGGTTCAGTTGGTTAGTGATGAGGGTTCGTTAGGATGAAGGTGTAGTTTTGATGCCCAGTGATAATGTTTTTATTCTACACACTACAGACAGTTTTGGgatggagttttcctttaaactCTTACCTTTTGGTATTTTTTTTCCATTAGTCCATTGACATAGTTTCCATGTTTTTGCTTGTCAGCTATCAAGTTTTCTAGATATCGAACTTTAAAAACACAAATCATCCCTGAATGAGGCTTTTTGTGTCATATGATGCAGCAACAGAATGAAAATTGCATATCTTGAACTTGATTGCTGACGAGCAAAACATTTTGAGACCGTTAACAATGGACCAATGAAACAAACACCGAAAGACCGTTTttggggtggagttttcctttaattgAAATGCTTTAGCAGCTGGGGCAGTATGTCCCTCCTTTATGCTAAACGTCTCCCAGAAAGTGAGAGGGTCGTCTTACCTCTGTCTTCAGAGTACTCCTATTAGAATGACGCTTATTCTGTCGGCTAACTGTCAGGAGTGGAATCCAAAGAGGCCGCTTGTCGTAACTGCATGTTTTCTGTTGCTATGTTACTGCTGTGGCAAAATATGGGTTAGAATCTAAATGAATTGTCCAAGAAGAGTGCCTtactacctttttttttttttgtatagcCTGATCGTGGAGTTAAACCCTGTACTGACGTCTGTTTTATTGTTCCTAGCAATGCAGAGTATTTAACATTGCCTTATACTACAGCGCTTCAAGTACTGTTTTACGTGTAAATGAGATTTCTTGTACTGTCTTTAATGAGAAGAAGAGCAATGACCTTAACACTCCTTTTTTTTTGAGCTAATAAATGAAATGGGACCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU792229 lncRNA upstream 33589 31360356 ~ 31360605 (+) True G696000
TU792228 lncRNA upstream 34652 31359155 ~ 31359542 (+) True G695999
TU792224 lncRNA upstream 42971 31350690 ~ 31351223 (+) True G695995
TU792222 lncRNA upstream 44761 31349212 ~ 31349433 (+) True G695993
TU792218 lncRNA upstream 49639 31344325 ~ 31344555 (+) True G695989
TU792693 lncRNA downstream 76102 31478666 ~ 31478902 (+) True G696423
TU792697 lncRNA downstream 81093 31483657 ~ 31483896 (+) True G696427
TU792685 lncRNA downstream 84226 31486790 ~ 31487759 (+) False G696416
TU792686 lncRNA downstream 84226 31486790 ~ 31560546 (+) True G696416
TU792747 lncRNA downstream 131805 31534369 ~ 31539339 (+) True G696476
XM_021612316.2 mRNA upstream 1120 31381107 ~ 31393074 (+) True ddhd1b
XM_021612317.2 mRNA upstream 17606 31368752 ~ 31376588 (+) True psmc6
XM_021612315.2 mRNA upstream 50329 31339232 ~ 31343865 (+) True LOC110529782
XM_036985282.1 mRNA upstream 86732 31226178 ~ 31307462 (+) False rad51b
XM_036985283.1 mRNA upstream 86732 31226203 ~ 31307462 (+) True rad51b
XM_036985288.1 mRNA downstream 147835 31550399 ~ 31573573 (+) True LOC110529230
XM_021612328.2 mRNA downstream 548528 31951092 ~ 32110879 (+) False LOC110529794
XM_021612329.2 mRNA downstream 674568 32077132 ~ 32110879 (+) True LOC110529794
XR_005052855.1 mRNA downstream 732632 32135196 ~ 32141382 (+) False LOC118965508
XM_021612333.2 mRNA downstream 750137 32152701 ~ 32156250 (+) True LOC110529798
TU790056 other upstream 1601447 29790997 ~ 29792747 (+) True G694036
TU789468 other upstream 2455921 28930760 ~ 28938273 (+) False cdca4
TU789469 other upstream 2455921 28935489 ~ 28938273 (+) True cdca4
TU789102 other upstream 2688442 28704850 ~ 28705752 (+) True G693207
TU789022 other upstream 2835821 28495285 ~ 28558373 (+) True btbd7
TU796067 other downstream 2725029 34127593 ~ 34128301 (+) True G699605
TU797136 other downstream 4052284 35454848 ~ 35462040 (+) True LOC110529856
TU797266 other downstream 4210600 35613164 ~ 35614666 (+) True G700685
TU797474 other downstream 4501485 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 5297874 36700438 ~ 36700739 (+) True G702415

Expression Profile