RNA id: XM_021612321.2


Basic Information

Item Value
RNA id XM_021612321.2
length 2754
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC110529787
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 31428524 ~ 31431727 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCGTGATTTGAGCTTATAACCAATTATTGTTATTAAAGATGAATCTGCTGCAGTATACTTGGAGAAtaatgaaacaaacaaaaaaaactggTGTGTCTGGCCTCTCTCCACCAACCTGTCTGCGCGTGACGCAAGGGTAGTCTACTTAAAGCAGGATTAGCGCCATACCAACATTACACTCAACTGCCCTCCATTCAAGCACGGCGCGACCTGGCGTCCAGCGCTCGCCATCGAAAATAGGAGGGCTTTCTACTAATCAGCACTCAGACTCGCGCGAGCAAAAGTGCTTGGGTTGTCAAGTGATCTTTTAGCAGAGGCGCAGAAGGCAGAAGGCAGGAGCGCACGCGGCAGCGGCGCGTTACCAATGCATTCTCCAGATATTGGAGCATCCGGAGTGTAAAACAAGGGAAACAATAGATTCCACAAGAACGGTGCACGGTGTGCTATCATCTCCAAATGAATGACAATGGGGGAGTGGACGATATTAGAGCGTCTCTTGGAGGCAGCTGTCCAACAGCACTCTACTATGATCGGAAGGATCCTCCTAACAGTGGTGGTGATTTTCCGGATTCTAATCGTTGCGATCATTGGAGAGACCGTCTATGATGACGAGCAGTCCATGTTTGTGTGCAACACCCTGCAGCCCGGCTGTAACCAGGCTTGCTACGACAAGGCGTTCCCCATTTCCCACATCAGATATTGGGTGTTTCAGATTATTCTGGTGTGCACCCCCAGTCTCTGTTTCATCACCTACTCCGTGCACCAGTCTGCCAAGCAGAAGGAGCGCTTGGAGCGGGGGTATTCCACCGTGTTCCTCTCCTTGGACAAGCGCCAAGATTCCATCAAAAGAGACGACAGCAAAAAGATcaaaaacaccattgtaaatggaGTACTTCAGAACACGGAGAACTCCACGAAAGAAGCCGAGCCCGACTGCTTGGAGGTGAAGGACATCCCAAATTCGGCCATGAGAACTAGTGGAAAGTCTAAAATGAGGAGGCAGGAGGGCATCTCAAGATTTTACATCATCCAAGTGGTTTTCCGAAACGCTCTAGAGATAGGGTTCCTGGTGGGTCAATATTTCCTGTACGGATTCAATGTCCCCGCGGTATATGAGTGTGATCGATACCCCTGCATCAAAGATGTAGAATGCTACGTTTCAAGACCCACGGAGAAGACTGTGTTTCTGGTTTTCATGTTTGCGGTCAGTGGTGTCTGTGTGCTCCTGAACTTGGCTGAACTCAATCATCTTGGGTGGAAGAAGATCAAAGTAGCTGTCAAAGGCGTGCAGGCCAGGAGGAAGTCCATCTACGAGATCCGTAACAAAGACATGCCTAGAATGAGCATGCCCAATTTCGGCCGCACTCAATCAAGTGACTCTGCCTATGTGTAGCATATTGAGAAGGCCCAAGACAAGCCTCGTGGACACCGGTTGCGTCAAACTGTATGGGTTCTCGCGGAGGGCCATTCATTTCAATGGGTGGCAATCCACACCACTGCGACTCATCTGCTGGACAAGGTTGTGGTGCGTAGCACTGCGTGCAGTGTGTCGCATGCGTTGGATTTTTCCAACTGGTGTATTGCTTTGCTGTGTGGTATCAGACACAGAAGTAGATAGACCACCGAAGAAGTTGCAAATATgtagcgttttttttttttttttttgcatgcgGCTTAAGTGCGACAGCTGTGCATTTCAGCACCACCGAACAGAACAATTGTACAaagaataaaaatatatttaacaagAATGTGGTGTATATTTTATCACACCAACTTCGCTTGGTAGATCGATTTTATTTGTCTTTTACTGACAACTAAAAAACAAACGGACCAAACGTTTGTCATATATTTATGAGAAGGCACTGATGCAACGTTTATAGATGATGGTTTAGCCTATATTTTGTAAAGCGCTTCTTAGAagtatataatgtatgtgttgaCATTCACTCTGTCGTTCACTTCAGCTGTTGAACATAGAGTAAATACTTGCACTATATATGAATAATGAGGCAAAATATATACAATGTGTGCTGTGATGGTGTTTTTACGACATTCCGCCGGATTTAAACACCATATACCATTATAgcaatgaaacacacacattatttggCAGTTTTAGGGTCAAATGTACTCAAATGATATACATTCTTCCAGtatattactcatctcacatCTTTGTTGTCAGCACTATCGTTGTTTCGGTCGCCTGAGTTTGCACCATTGACCTTAACCTATGTGATCACTCAATTGGGGGGTAGGGGCTTGGGACTTTTAAAAttcattttttctttattttatttacacCCAGGCGCCCATTGCTTTCGTTTGTGGGCAAATGGATTTTCTTGATTTAATGTCATCAAGTGCCatatatgtacataaatataaaCATTATAAATGTATAGAGTATTATCATCATCATAACAGCAGAATTCTGTAAATTCCTCTTTTGGATTAAACGCTGTCAACGTATATGATTTGAATAGCTGTGGTTTGTATGGAAATGGTATGCTACTGCTATATTATCATCCCTGGTTTCATTTGGCAACATGAAAAAACAAGCAACCTTTGCACATTCAAAAAGTATTGATGAGCAATTAGTCATATAGACTAGAGCACAAATCTGAATTGGAATCAATCCGATGATAGGCAATAAATGTTTGCCCCTGGTGCTACCATTTTCCAAAGCAATCATCGATGTAAGATCATACCGAAAGGTGATCCTATccacaaataaaaatgtaattcat

Function

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0007267 cell-cell signaling biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0055077 gap junction hemi-channel activity molecular_function
GO:0005244 voltage-gated ion channel activity molecular_function

KEGG:

id description
K07373 GJD2, CX36; gap junction delta-2 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU792645 lncRNA downstream 25968 31397740 ~ 31402556 (-) True G696378
TU792635 lncRNA downstream 66210 31362041 ~ 31362314 (-) True G696369
TU792633 lncRNA downstream 68307 31359968 ~ 31360217 (-) True G696367
TU792632 lncRNA downstream 73420 31354830 ~ 31355104 (-) True G696366
TU792631 lncRNA downstream 73992 31354199 ~ 31354532 (-) True G696365
TU792811 lncRNA upstream 118785 31550512 ~ 31551280 (-) True G696531
TU792825 lncRNA upstream 140542 31572269 ~ 31574519 (-) True G696543
TU792922 lncRNA upstream 203597 31635324 ~ 31635619 (-) True G696639
TU792923 lncRNA upstream 206413 31638140 ~ 31638372 (-) True G696640
TU792932 lncRNA upstream 210880 31642607 ~ 31642920 (-) True G696649
XM_021612318.2 mRNA downstream 47446 31376592 ~ 31381078 (-) True cgrrf1
XM_036985285.1 mRNA downstream 130003 31292803 ~ 31298521 (-) True zfp36l1b
XM_021612304.2 mRNA downstream 211759 31209003 ~ 31216765 (-) False LOC110529778
XM_021611348.2 mRNA downstream 308024 31099526 ~ 31120500 (-) False LOC110529227
LOC118965648 mRNA downstream 311777 31116578 ~ 31116747 (-) True LOC118965648
LOC110529789 mRNA upstream 665 31432392 ~ 31435370 (-) True LOC110529789
XM_021612322.2 mRNA upstream 21607 31453334 ~ 31458247 (-) True LOC110529790
XM_021612323.2 mRNA upstream 55090 31486817 ~ 31503990 (-) True LOC110529791
XM_021612325.2 mRNA upstream 170956 31602683 ~ 31606191 (-) True LOC110529792
XM_021612326.2 mRNA upstream 225905 31657632 ~ 31679802 (-) False LOC110529793
TU792310 other downstream 573117 30855107 ~ 30855407 (-) True G696073
TU792305 other downstream 581315 30846902 ~ 30847209 (-) True G696068
TU790962 other downstream 1366356 30001763 ~ 30062168 (-) False G694858
TU790963 other downstream 1366356 30038588 ~ 30062168 (-) True G694858
TU789639 other downstream 2469692 28958395 ~ 28958832 (-) True G693665
TU792778 other upstream 45627 31477354 ~ 31478027 (-) True G696499
TU792983 other upstream 225999 31657726 ~ 31679735 (-) True LOC110529793
TU793919 other upstream 782759 32214486 ~ 32217549 (-) False LOC110529804
TU793920 other upstream 782759 32214486 ~ 32217549 (-) True LOC110529804
TU794118 other upstream 1067072 32498799 ~ 32499410 (-) True G697774

Expression Profile