RNA id: LOC110529789


Basic Information

Item Value
RNA id LOC110529789
length 1987
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC110529789
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 31432392 ~ 31435370 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACAACTTGTCACTCTATTACGGTAAACTTGTAGCCTAGGCCTAGGTTGGAGCCACTTCAAAGATGTTGAATTGGACTTCTCTAGTTTGCAACCGGACAACTGGATTTAATGGGCTTTCATTTCAAATTTGACAGCTTGAATTTTCAAGACACTTCTTTTTTGCTGTTGAATATTGATAAAATAAACAGCTGTTGTTGCCTAAATGTTGcacatattttattatttttattagtcTGTTTTCCATCAGATTCAGACCTACAAGCGAAATTGATAACCAATAGATAATTATTATTGTTAGATTAATAATACATTGATTTACAATGTGCTTCCCAGTCTAGGGTTTTAAaagaaatgtaaataaataatgacCTAAAACAAGTTTGTTAGACTTGTATGGCCCTTATACCGTAGACCTATgctgattttcccttacgaaaaatgtgtcaacccctacaaaaatgtaaatttcctgttgatgcaggattattttcctgctgtagcaaactggctaaaATTAAAAGCCTACATCTGTAGGCCTAAACTTAGCCTTAATGTACGTTTTGTCAAAACAAAAACTCAGCTGACATCATGTGTGACGACGATGAGACTACTGCCCTTGTGTGCGACAATGGCTCTGGTCTGGTGAAGGCTGGCTTTGCCGGAGATGATGCACCTCGCGCTGTGTTCCCCTCCATCGTTGGTCGCCCCCGTCATCAGGGTGTGATGGTGGGTATGGGTCAGAAGGACTCTTATGTAGGAGACGAGGCCCAGAGCAAGAGAGGTATCCTGACCCTCAAGTACCCCATCGAGCATGGCATCATCACCAACTGGGACGACATGGAGAAGATCTGGCACCATACCTTTTACAATGAGCTGCGCGTGGCCCCCGGGGAGCACCCCACCCTGCTCACAGAGGCCCCCCTTAACCCCAAGGCCAACAGGGAGAAGATGACTCAGATCATGTTCGAGACCTTCAACGTGCCCGCCATGTACGTGGCCATCCAGGCCGTGCTGTCCCTCTACGCCTCGGGTCGTACCACAGGTATTGTGCTGGACTCTGGTGATGGTGTGACCCACAATGTCCCCATCTATGAGGGTTACGCTCTGCCCCACGCCATCATGCGTCTGGATCTGGCCGGTCGCGACCTCACTGACTACCTGATGAAGATCCTGACTGAGCGTGGCTACTCTTTCATTACAACTGCCGAGCGTGAGATCGTGCGTGACATCAAGGAGAAGCTGTGCTACGTGGCCCTGGACTTTGAGAATGAGATGGCCaccgctgcctcctcctcctctctggagAAGAGCTACGAGCTGCCTGACGGTCAGGTCATCACGATCGGCAACGAGCGTTTCCGCTGCCCCGAGACCCTCTTCCAGCCTTCTTTCATCGGCATGGAGTCTGCTGGTATCCATGAGACTACCTACAACAGCATCATGAAATGTGACATTGACATCCGTAAGGACCTGTATGCCAACAACGCGGCACCACCATGTACCCTGGTATTGCTGACCGTATGCAGAAGGAGATCACCGCCCTGGCCCCCAGCACTATGAAGATCAAGATCATCGCTCCCCCCGAGCGTAAGTACTCCGTCTGGATCGGCGGCTCCATCCTGGCTTCCCTGTCCACTTTCCAGCAGATGTGGATCAGTAAGCAGGAGTATGACGAGGCAGGCCCCTCCATCGTTCACATGAAATGCTTTTAAGCTCCTCATTGACAAATTGCTCTCCCCTGCGACAGTCAGACGCCCACGGATGCAAAAACTCTGTACATTACCTCCGCCTATGGATATGTTGTTTATGATCGATATGCAAGTTACAAATCCAGACAGGCCCCTGTTTTATGTTTTGTCAATGATGTACAGTTTGTTTACACCAAAGTGCAATttatattttgttattttactgGTTCCTGAATTAATTTATATGATGTGGATATGTATTTGCTTTATAAATAAACAATACCTAGGATTTTGTATA

Function

GO:

id name namespace
GO:0036302 atrioventricular canal development biological_process
GO:0045471 response to ethanol biological_process
GO:0055003 cardiac myofibril assembly biological_process
GO:0055008 cardiac muscle tissue morphogenesis biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0042493 response to drug biological_process
GO:0030240 skeletal muscle thin filament assembly biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0003272 endocardial cushion formation biological_process
GO:0030049 muscle filament sliding biological_process
GO:0060048 cardiac muscle contraction biological_process
GO:0005829 cytosol cellular_component
GO:0070062 extracellular exosome cellular_component
GO:0031674 I band cellular_component
GO:0042643 obsolete actomyosin, actin portion cellular_component
GO:0017022 myosin binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU792645 lncRNA downstream 29836 31397740 ~ 31402556 (-) True G696378
TU792635 lncRNA downstream 70078 31362041 ~ 31362314 (-) True G696369
TU792633 lncRNA downstream 72175 31359968 ~ 31360217 (-) True G696367
TU792632 lncRNA downstream 77288 31354830 ~ 31355104 (-) True G696366
TU792631 lncRNA downstream 77860 31354199 ~ 31354532 (-) True G696365
TU792811 lncRNA upstream 115142 31550512 ~ 31551280 (-) True G696531
TU792825 lncRNA upstream 136899 31572269 ~ 31574519 (-) True G696543
TU792922 lncRNA upstream 199954 31635324 ~ 31635619 (-) True G696639
TU792923 lncRNA upstream 202770 31638140 ~ 31638372 (-) True G696640
TU792932 lncRNA upstream 207237 31642607 ~ 31642920 (-) True G696649
XM_021612321.2 mRNA downstream 665 31428524 ~ 31431727 (-) True LOC110529787
XM_021612318.2 mRNA downstream 51314 31376592 ~ 31381078 (-) True cgrrf1
XM_036985285.1 mRNA downstream 133871 31292803 ~ 31298521 (-) True zfp36l1b
XM_021612304.2 mRNA downstream 215627 31209003 ~ 31216765 (-) False LOC110529778
XM_021611348.2 mRNA downstream 311892 31099526 ~ 31120500 (-) False LOC110529227
XM_021612322.2 mRNA upstream 17964 31453334 ~ 31458247 (-) True LOC110529790
XM_021612323.2 mRNA upstream 51447 31486817 ~ 31503990 (-) True LOC110529791
XM_021612325.2 mRNA upstream 167313 31602683 ~ 31606191 (-) True LOC110529792
XM_021612326.2 mRNA upstream 222262 31657632 ~ 31679802 (-) False LOC110529793
XM_021612327.2 mRNA upstream 222262 31657632 ~ 31703525 (-) False LOC110529793
TU792310 other downstream 576985 30855107 ~ 30855407 (-) True G696073
TU792305 other downstream 585183 30846902 ~ 30847209 (-) True G696068
TU790962 other downstream 1370224 30001763 ~ 30062168 (-) False G694858
TU790963 other downstream 1370224 30038588 ~ 30062168 (-) True G694858
TU789639 other downstream 2473560 28958395 ~ 28958832 (-) True G693665
TU792778 other upstream 41984 31477354 ~ 31478027 (-) True G696499
TU792983 other upstream 222356 31657726 ~ 31679735 (-) True LOC110529793
TU793919 other upstream 779116 32214486 ~ 32217549 (-) False LOC110529804
TU793920 other upstream 779116 32214486 ~ 32217549 (-) True LOC110529804
TU794118 other upstream 1063429 32498799 ~ 32499410 (-) True G697774

Expression Profile