RNA id: XM_021612322.2


Basic Information

Item Value
RNA id XM_021612322.2
length 4428
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC110529790
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 31453334 ~ 31458247 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAATCAGATAATCTGATCACATTTAAATGTTCAAAGAATTGCATTCTGCAGTAGCTAAAACGACCGGGAACAAATAATGGCGAATACGTTTCCGCCCGTGCACTTATCATGGACGGTAGTTAAAGGCTTGTTTTGAGGAAGGTGGAAGTGTTAGCTCATATAGCAAGCTAATTCTTTGTTTATTAAAAATAATAACGGTATTTATTACTTAATTATTAGTTCGTTAGACGTGATTTAGCAATTTATAAAGGTTGCCAAATGATGTTGTCCTCCCATATTGGCAGCTGGGCTGTACAACAGAGGAACTAGAAGGATAACATCCTACGAGTGGAAATAATACTATATTGTTAGTGGACACAATGCTAGCCAGGCATCATGGAACACAGGAGGCCTTCGGCGTTATGGAGAAGACGCCACAAAGCAAGAATTATCAGTGTGTCACATGCTTGAAATGCTTTTCTGCTCCATCCAAACTACAGAGGCACATCCTTTCGCACACAGGACAAAGACCATTTGTGTGTCACCTCTGTGAAAAGGCATTTAGGCAATTAGCACACCTGAAACTCCATATTAACACACACCTTTATCCAAAACATATTGAACGGAAGAACAATGTAAAGTCTAGCTTTCATCCAAGTGGATATGAAAATGACCCTCCTATAAAGATAGATAACTCAAATGCATGTTTGCAGACAGGCTCCTTGGACACATTTGGTGCAGAGGTGGGCATCAGTCCAACTGCACCTGTCGACAGAGTTGAGGAAaaatctctctgttcctctcgcTGCACCACTGAACTCAATCGCCTACACTCTGTGGTCGAGAGGTTTGAGAAGCAGCACATAAAAGACGAGGCAACGAGGAACCACGATGACTGGAGTGAACCTGAGAAACAGACACTGCATGAGGATAGATCCTCCAGAGATGAAACAGTGGCCAAACATACAAAAATAATTGAGAATTCAAACTCTCATAAATGCCCTGAGTGCTTTAAGTGCTTCAGCGCCCCGTCCAAATTAAAGAGGCACTGCCTGATTCACACAGGCCAGAAACCATTTCAGTGCTACCTATGCCGACGTGCTTTTAGGCAGCTGGCCCATCTAAAGGTACACTACAGCATTCACTCTGGGGTCGCCAAGTCGCGGAACTCTTCACTACCACGACAAAGTCTCATATCTATTTCCCAACCCCAGCGGTCAAAAACCTGGCCAAGGAACTATCCATGTATCATGTGTGGAAGGAGATTTAAACAGAAGAGACATTTGATAGTCCACCAACAAACTCATAAAGTTTCAGAGACTGCTGTGTACCCTCGTAAGTTAAATAATACAAGTAAGGCCTACCTTCCCCCTCAAACTAATTGTGCTTCCAAAGTATATTTCCAAAACTCTAAAAGTTCTATAACGTACAACACAGAGCTGAATGGTAAGAGACAACTAGATGTAGTTGAAGGTTTATACAACTTATCAGAAATATTGCATGATGGTGTAAAACATGCATCACAGGAGCACATTGACCTCACTCGCTCCTCAGACAACAGAAACAAGTTGCTTGTGTCTAATCGCACAGACCATACACATACAAGCACGCGTAAGGTAAGGGGAAATCAGTGCATGATATGCCTGAAGAAGTTTGACTATCCCTCCAAACTCTCCCGACATCTGTTGGTCCACATGGGCATTAAGCCTTTCGGATGCACCGTCTGTAGTAAGTCCTTCAGGCAGCTCTGCCATCTACAGACTCACATGAAGGCCCACCACATAAAAAGTGATTTTTTTTCGAAAAGAGTAGAAGATACCCCCGACCAACCAGGGGATATTATATTAAAGAACAAGCCTGTTTCTGCGGTGAAGAGAAATCAAAGTGAACATTTAGACCAAGTTTCTCAACCTCGGGAAGCCAGCAGAGGCATCAATGAAGTTGATTGTTTCCTAAGCCAGTATGTTTTACCTGTCAGGCCTACCTTCAGTCATTGCTCCACTGACAGTCTCTCCAACTATGGTGCTCAACAACCTGCATGGAACCCCAGTGAGAAGCTGCTACCTGGACTGGACACTGACACAGACAGGAAGTCTTCAGCAGAGCCAATATCTCTCAGACAAGGACATGAGACAGACTACAAGAAGACCAGTGATGTATTTGACAGCACACCGACACACCATTCACTAATAGGCAAATCTAAACAAAGGAGTTGCATCTTACAAAAGAAACCCACAATCCATGGCAGAGGGCGCTATTGTTGCCCAGTTTGTTCAAAGCGCTTTGGCGCTCCATCCAAGCTACAGCGGCATTCCCTGGTTCACACAGGACAAAGGTCCTATCAGTGCCCCACTTGTCCCAAAACGTTTAGACAAAAAGCTCATCTGAAGGTGCACCAGTCTGTTCATGAACAAGGGAAAGAGGCTCAACCCTCTATTAGTCATAATGAAGACAGGCAGACCAAGTCTTTATCAAGACTGAAAAGGACCCCATGTTCAAATGGAAAGGACGTAGTCTTCCGTAATAGAAGTGAAAATACTTTATCGAGTGGCAGTGGtctctctgctgtccctctaGCTCAGTTCAACTGCCCCCCAACAAACGGCGTCGACAGCCAAACACTGCTTCCTGTTGCATCTAGGAAATCAGGGGTGTGCCAGTGCATGGCCTGTCTGAAGAAGTTTGACTATCCTTCTAAACTCTCCCGACATCTATTAGTCCACATGGGCATCAAGCCTTTCAGATGTACCGTCTGTAGTAAGTCCTTCAGACAACTCTGCCATCTACAGTCTCACGCGAAGGTCCACTATAATAAGGCCACACTGCATGGGGATGAACAACAGAGGAACATCAACTTGGCTCAACTGGACATTATTCCCCTAGAGGATGGGACTGTTTCGGAGGGACACATCTTTGCAGCAGGTCTTCATCAAGATGAACCTGGCCCAAGTCAAGGTTTTGGAAATTACAGACAAAATGGTCATGGTGGTGAATCATACAATCACTTCTGTTTAACAGAAAGCGCAAACCAATCAACAGAAATCCACAGAAAGCATGAACCAACCCCAACCCCTGAACAGTCAGAAGACGTGAAAAGCATGAAGTCAGAGAATAACTGGAATTTTGCTGAGGAGAAACACGTGGAAAAGTTTCCCTCGCATGAATATTATGGGCGGCAAAACCACCCCCAGCTTCCTAACTGGTTAAGCCCTTATCCATATCACCAAGAAACCACCAAAAACAAACAGGCACATCCTATTGCTAACCAACATGTTCCGTATCTGGAGGATAGACCTAATTCACAATACGGTGCTAAAGAGGAGGACGGGTTAGAGGGTGGCCTTAGGTCAGAGTTGAATGTTCCATATAAGTCAGAACCTCCCAACGACCTTCACGTCTGCGCAGGCTGTAGTCAGTGTTTTACCACCAAGAGGAAACTGAATCACCACAGGTGTTCTCCGAGACatttagagaaagagagacaggcgAGCTCGTATCAGTGCGCCATCTGTTTCAAAAGCTTCGAGGCTCCCTCGAAATTGAAAAGACACGATGTTATCCACACAGGCCAGAGGCCATTTCAGTGTACACTGTGTGGAAAGGCTTTCACCCAGGCAGGCCATTTAAAGACACACCTGCAAATCCACAGGTAAAAGACTTGGGACCGTCATCTACTGTTTAAAGACTAATAACAGATCTCCACACACTCACATGTTACTTTGGCTACTTACCTTGCCATGCTCCTCTATTCTCCAACATGAGCTTTTTGGATTGCAGAATATGTTCATCCGGATAAAAAAGTAAATATTTTTGTGTGTTTCTTTTTGTGTCTTCTATTATAGATGGCGTTACATGGTTCACTGAGTTTGTACTAATGTAATTATGTGTGGTGTATTAGTTGATGCTAACAATCTGCCTATCGCATCGCATACTGGTATTCACAGTGCCCTCAGAAtgtattcataacccttgacttattACAACATTTGTTGattcagcctgaattcaacattgctaaaaaaaataataataatccgaACCCATGTGATTCAGGccgcaacacaacaaaatgtgggaaaaagtcaaggggtgtgaatactttccgaaggcactgtatttgtaaaTAACTTATTAATATGTAAGTACAACAGCAGTCAGTTCTTCTGTTTCACACACATGAAGTATACACTAATAAAAATGTCTTCAATGCAATACTCTGGTTGGCCATATCATTATGTTGCTATTTGGTTATAGCTGGAAAATATTTCATTTGGCACTGAGGGTAGGCATGGTTTATTCTCAGACGACAGGATCGATGCCATCTGATCACACTTACTTGGCAGGTCATTTCATTATGGTTTCGCAGTACCACTCCTTCACACAAGATGGCATCATGTCTCTGTTTTGGTTAGTTGAGATGCACTTTGAGGAGAAGGAGCATCTGACTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU792645 lncRNA downstream 50778 31397740 ~ 31402556 (-) True G696378
TU792635 lncRNA downstream 91020 31362041 ~ 31362314 (-) True G696369
TU792633 lncRNA downstream 93117 31359968 ~ 31360217 (-) True G696367
TU792632 lncRNA downstream 98230 31354830 ~ 31355104 (-) True G696366
TU792631 lncRNA downstream 98802 31354199 ~ 31354532 (-) True G696365
TU792811 lncRNA upstream 92265 31550512 ~ 31551280 (-) True G696531
TU792825 lncRNA upstream 114022 31572269 ~ 31574519 (-) True G696543
TU792922 lncRNA upstream 177077 31635324 ~ 31635619 (-) True G696639
TU792923 lncRNA upstream 179893 31638140 ~ 31638372 (-) True G696640
TU792932 lncRNA upstream 184360 31642607 ~ 31642920 (-) True G696649
LOC110529789 mRNA downstream 17964 31432392 ~ 31435370 (-) True LOC110529789
XM_021612321.2 mRNA downstream 21607 31428524 ~ 31431727 (-) True LOC110529787
XM_021612318.2 mRNA downstream 72256 31376592 ~ 31381078 (-) True cgrrf1
XM_036985285.1 mRNA downstream 154813 31292803 ~ 31298521 (-) True zfp36l1b
XM_021612304.2 mRNA downstream 236569 31209003 ~ 31216765 (-) False LOC110529778
XM_021612323.2 mRNA upstream 28570 31486817 ~ 31503990 (-) True LOC110529791
XM_021612325.2 mRNA upstream 144436 31602683 ~ 31606191 (-) True LOC110529792
XM_021612326.2 mRNA upstream 199385 31657632 ~ 31679802 (-) False LOC110529793
XM_021612327.2 mRNA upstream 199385 31657632 ~ 31703525 (-) False LOC110529793
XM_021612332.2 mRNA upstream 674436 32132683 ~ 32135194 (-) True LOC110529796
TU792310 other downstream 597927 30855107 ~ 30855407 (-) True G696073
TU792305 other downstream 606125 30846902 ~ 30847209 (-) True G696068
TU790962 other downstream 1391166 30001763 ~ 30062168 (-) False G694858
TU790963 other downstream 1391166 30038588 ~ 30062168 (-) True G694858
TU789639 other downstream 2494502 28958395 ~ 28958832 (-) True G693665
TU792778 other upstream 19107 31477354 ~ 31478027 (-) True G696499
TU792983 other upstream 199479 31657726 ~ 31679735 (-) True LOC110529793
TU793919 other upstream 756239 32214486 ~ 32217549 (-) False LOC110529804
TU793920 other upstream 756239 32214486 ~ 32217549 (-) True LOC110529804
TU794118 other upstream 1040552 32498799 ~ 32499410 (-) True G697774

Expression Profile