RNA id: XM_021612323.2


Basic Information

Item Value
RNA id XM_021612323.2
length 2749
RNA type mRNA
GC content 0.48
exon number 13
gene id LOC110529791
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 31486817 ~ 31503990 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCTCTTTCCAGGTTCCGTCATCGCCTTCTACCGCTGATCAGTGGAGCCAGTCTATCCTATAAGCGCGCTCACAGCCAACCTGCAAACATTCGCTGACACCTTCACATTTCAGAGCAGGAGGCAATGGCCACGAGGATCGACGCATCGATATAGCCTGTTTGTCCTGGGAAGTTCTTTCTTCTTAGGCTACATTTCGTTTTCAGGGAAAACGGTGCGTTGGAAGCAATATACGGCCTTCTGGAACGAATCAGTTCTATCAACTGTATGGGCTATAGATTACCTTGACAAGCAGTCTCGGTGATTGACAGTAGGACCAACACACGAGGGTTGTCGATGCGCTTATTAGAAAAACTTTTAACCGAAGGTCCTTAGTATTATCCGCCATGGTGATTTCGCCATTTAGACTATTGCATTAATTATTCTTGAAAAATACACATCTTCACCTTGCTGCGGGTTTCCTTTTTATTGCCACTGCGGATTACAATATTCAATCGGACGTAAAAGGCATCAACTTCATACGCCGCCTTCTCTGCGGACTGAGACAGTAGCTGTTTCTTACCACTCTGTATCTCCAAGACAAGCGCATGTCGATGGCGCAAAGGTACGATGAGCTGGCCCATTATGGTGGTGGGATGGACGGGGTTGGACTCCCGGCGTCTATGTATGGAGACCCGCATGCTCCCCGGCCCCTTCCGCAAGTCCACCACCTGAACCACGGTCCGCCTCCTCATCCAACCCAGCACTATGGAGCCCACGCACCCCACAACATCATGCCCAGCAGCATGGGCAGCGCTGTCAACGACGGACTAAAAAGAGACAAAGATCAAATCTATGGTCACCCGTTATTCCCTCTGCTAGCACTGGTGTTTGAAAAGTGTGAGTTGGCGACCTGCACACCGAGGGAGCCTGGAGTAGCGGGCGGCGATGTCTGCTCGTCAGATTCCTTTAACGAAGACATCGCTGTCTTTGCAAAACAGatACGTGCAGAGAAACCGTTATTTTCGTCGAATCCAGAGTTGGACAACTTGATGATCCAAGCTATACAAGTATTACGATTTCATCTTTTGGAATTAGAGAAGGTGCACGAGCTCTGCGACAACTTCTGCCATCGGTACATCAGTTGTTTGAAAGGCAAAATGCCCATAGACTTGGTCATAGACGACCGAGATGGCTGCAAATCTGACTTCGATGACCTGACAGGATCCTCCACAAATCTAGCAGATCACAACCCGGCgtcctggagagacctggaagACGCCCACTCCACGCCTTCTGTGGGCACCCCGGGGCCCTCCAGCGGGGGCCACGTCTCCCAGAGTGGGGACAACAGCAGTGAACTCGGAGACGGCCTCGACAACAGCCTTGCATCACCGGGCACAGGGGACGAGGACGACCAGGACAAGAAGCGGCAGAAGAAGAGAGGCATCTTCCCCAAAGTGGCCACCAATATCATGCGAGCGTGGCTCTTCCAGCACCTTACGCACCCCTATCCTTCAGAGGAACAGAAGAAGCAGCTAGCACAGGACACAGGCCTCACCATCCTGCAAGTGAACAACTGGTTCATCAACGCCAGGAGGAGAATAGTACAGCCTATGATTGACCAGTCTAACAGAACAGTGGGCCAGGGGACAGCATACAGCCCTGACGGTCAACCAATGGGAGGCTTTGTACTCGACGGACAGCAGCACATGGGAATTCGACCTGGCGGACCAATGGGTGGCATGGGAATGAATATGGGCATGGATGGACAGTGGCACTACATGTAAACCCTCTCCAACCAAGGCAAGCCTGAAGAAGATGGTGAAGCCTCCGTGGTTGGCTCAGGGAAAATTCCATCCTGCCGCGTGGTCCAATGAAAGCGTGACTCCGCCCAAGTCACACCCATCATCTGACCACGCCCACCTCACAATCGCACTGGAGCATAGAGGACCACACCTACCCTGGGACAACCCACACCTGTACAGACCCTGCCCACATTGACCTTTACTAACTAACCCCATGGCTGGAGGAAGACCAGGATCtaggaataaacaacaacatttacagacaacaacaacaaaatacttcTGAATGAACAACAGAAGCTAAAATGACCTCAACAACATTTTGACAAATTAGttttcttttttaaattatttatttatttttctacaATGGTGGACCATTGGGACAAGAACTTTCAAGTATTTGCTCAAGATCTATTGTCACAATTGTACATacacacagcccacacacacacacatacatacgctCACTtacacatgttcacacacacacacacacacacacacatattctcacacacacacacacactacatcctATGAGCACACCATTTGAAAACAACCACTGTGGAATATCTAAAAAGATGATGGCGACTAAGACTTTTAATAGCTGTTGTGGTGTATAGACTTGTGCTTTTTCATTTGACTGTTCTGTCCATGTTTGTGCTTTTGTGATCACTAGTTTATAGCGTGAGAGTTTATCACTGATCCCACCTTCATGTgctgtggaagagagagagagagagagagagattgactcAGAGTTTGCAGCTCCATCCAGCTCCCAGTAAAATACCAAGCCCGATTTTTATAAGACTGAAAGAGCTGATGAACTGACTCCATACTGGTAAGGTGGATCCTGGACTGACCATTTAGATCGCATTCAAATAGTTTTATAGCACACAGGAAGAAGGGATGGGTTTCTACACTAAAAACCAAAATAAAAACTCATTTTAAAACTTGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0001947 heart looping biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K16672 HTH; homeobox protein homothorax

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU792645 lncRNA downstream 84261 31397740 ~ 31402556 (-) True G696378
TU792635 lncRNA downstream 124503 31362041 ~ 31362314 (-) True G696369
TU792633 lncRNA downstream 126600 31359968 ~ 31360217 (-) True G696367
TU792632 lncRNA downstream 131713 31354830 ~ 31355104 (-) True G696366
TU792631 lncRNA downstream 132285 31354199 ~ 31354532 (-) True G696365
TU792811 lncRNA upstream 46522 31550512 ~ 31551280 (-) True G696531
TU792825 lncRNA upstream 68279 31572269 ~ 31574519 (-) True G696543
TU792922 lncRNA upstream 131334 31635324 ~ 31635619 (-) True G696639
TU792923 lncRNA upstream 134150 31638140 ~ 31638372 (-) True G696640
TU792932 lncRNA upstream 138617 31642607 ~ 31642920 (-) True G696649
XM_021612322.2 mRNA downstream 28570 31453334 ~ 31458247 (-) True LOC110529790
LOC110529789 mRNA downstream 51447 31432392 ~ 31435370 (-) True LOC110529789
XM_021612321.2 mRNA downstream 55090 31428524 ~ 31431727 (-) True LOC110529787
XM_021612318.2 mRNA downstream 105739 31376592 ~ 31381078 (-) True cgrrf1
XM_036985285.1 mRNA downstream 188296 31292803 ~ 31298521 (-) True zfp36l1b
XM_021612325.2 mRNA upstream 98693 31602683 ~ 31606191 (-) True LOC110529792
XM_021612326.2 mRNA upstream 153642 31657632 ~ 31679802 (-) False LOC110529793
XM_021612327.2 mRNA upstream 153642 31657632 ~ 31703525 (-) False LOC110529793
XM_021612332.2 mRNA upstream 628693 32132683 ~ 32135194 (-) True LOC110529796
XM_021612343.2 mRNA upstream 710461 32214451 ~ 32217570 (-) False LOC110529804
TU792778 other downstream 8790 31477354 ~ 31478027 (-) True G696499
TU792310 other downstream 631410 30855107 ~ 30855407 (-) True G696073
TU792305 other downstream 639608 30846902 ~ 30847209 (-) True G696068
TU790962 other downstream 1424649 30001763 ~ 30062168 (-) False G694858
TU790963 other downstream 1424649 30038588 ~ 30062168 (-) True G694858
TU792983 other upstream 153736 31657726 ~ 31679735 (-) True LOC110529793
TU793919 other upstream 710496 32214486 ~ 32217549 (-) False LOC110529804
TU793920 other upstream 710496 32214486 ~ 32217549 (-) True LOC110529804
TU794118 other upstream 994809 32498799 ~ 32499410 (-) True G697774
TU794745 other upstream 1485255 32989245 ~ 32990061 (-) True G698356

Expression Profile