RNA id: XM_021612328.2


Basic Information

Item Value
RNA id XM_021612328.2
length 5346
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC110529794
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 31951092 ~ 32110879 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGTTACCGAGACGCAGGCTGGTCGTGCCACCTAAATACCTCAACCAGCTATCTGCTGCTCTGCGTTATCCCCTTTGTGCCGCGCTGTGTGATTGTTGCAGAGGATTAGGCTACTCGTTTCTACAAGGTTTTGCTCGGAGCGCAAAATTATCCGGTATAGGTGTTTTGCCAAAAAATCAACTAATTCTGAATTGAACAATGGGCTATtgctttttaattaatttgtccTGGTATGCTTTTAATCCTGTGCTATTTTTCAAGTATTTTAAGGAAGAATGGAAATCGATTCAAGTAAGGACGAATTACGATAGATCAGAACTATAGATTACAGTAAAATTGAGTGAGCGTTCGAGTTTGATTGAAATAACTCAACATAGCCTACATTTGACCAGTTTCGCTGCACCAATATAGTGCCCGTCTTTCAAACTGCTGAGAGACTGGGGAGGTTGTCTTGCACTGAATGAGTCGCTTTGGAACGCGCGCTATCCACAGAGCGAGCCGGTGATGAAAAAGGTCGGGATTGCGATCAGTAGGCTAGCCTATATTGGAAATTAAAAACGATTTTGGAATAATGGTGAAGTGAAAATAAGAACGCCGAAGATGCAACATCTCCTTGGTAGAATACACGATGGACAAATGCCTGCCATGAATGGTGAGAGCGTAACCCGATGAAGTATGATACATGTATATCACATGCAAGGGAGAGCAATTGCCAAGAATTTTCTGGAAGAGGAGAACGAGACGTCAAGGAGGCAGAAAGGACGGTCTTATGATGGTCAGAATGAGCTCAGGAATAAGGCTTTTGCTGAGGTGAAAATAATGGAAGCCTGACCCAAGGAGAATCTTCCACCTGATTATCCATAGCCTGTTCGCTGTTGGCCATTCCCTCTGGTGTGGTGGGAAGAGGCGTGCAGGCTGTGATTGACGGGCGATGCCCCGTGAGTGAACCTATGGCAgtgacacaacacaatacaggTTCCTTTGTGTGACTCTACCATGGACCACATCCTCTGTTGCCTGCTGGTCCTGGGAACCGCAGTGATGATGGCCCATGCATGCCCTAAGTACTGTGTCTGCCAGAACCTATCCGAGTCCCTTGGGACCCTGTGCCCCTCCAAAGGCCTTCTCTTCGTCCCGTTGGACCTCGACCGGCGCACTGTGGAGCTCCGGCTGGGTGGCAACTACATCCTCCGCATCACTCAGCAGGACTTTGCCAACATGACCGACCTGGTGGACCTGACGCTCAGCCGCAACACCATCAGCTACATCCAACCCTTCTCCTTCGGCGACCTGGAGACCCTGCGTTCCTTACACCTGGACAACAACCGCCTCATGGAGCTGGGTCCAGAGGATCTCCGGGGCCTGGTTAACCTGCAGCACCTCATCCTCAACAACAACCAGCTGGGACGCATCTCAGACAGGACCTTCGAAGACCTGGCCCCCTCCCTGGAGGATCTGGATCTGTCCTACAACAACCTGAGGAGCCTGCCCTGGAACTCAGTCAAGCAGATGGTCTCCCTCCATCAGTTGAGTCTTGATCATAACCTCCTGGACTTTATCCCTGAGGGGACCTTTACTAATCTAGAAAGGTTGGCTCGCCTGGATCTCACCTCCAACCGGCTGCAGAAGCTGCCCCCGGACCCCATCTTCGCCAGGGCACAGGATTTGGTGCTGTTGACCACGCCCTACACCCCTCAGCTGTCCCTTAGCATCGGGGGAAACCCCCTGCATTGTAACTGCGAGGTGCTGTGGCTGCGGCGGCTGGAGAGGGACGACGACCTGGAGACCTGCGCTTCCCCTCCCAGCCTGAAAGGGCGCTACTTCTGGTATGTGAGGGAAGAGGAGTTTGTGTGCGAGCCGCCACTCATCACTCAGCACACTCACAAGATGCTGGTGCTGGAGGGCCAGACGGCCAGCCTGAGGTGCGAGGCTGTTGGAGACCCCACCCCTACCATCCACTGGATGGCCCCCGATGACCGTCTCCTTGGCAACTCATCCCGTACCGCCGTCTACCGCAACGGCACCCTGGAAATCCTCATTACCACCTCCAAGGACTACGGTACCTTCACCTGCATCGCTGCCAACGTGGCTGGAGAGTCCACCGCCTCTGTGGAGCTGTCAATCATCCAGCTGCCCCACCTTAGCAACGGCACCAGTCAAGCCTCGCAGCCCAAGTCCCGCCTCTCAGACATCACAGGCACCACTAGGATCAGCAAGGGGGTTCCTAAGAGCCCGCCTGAGAAAGTGGTCACTGTGTCAGAGGTGACAGCCATTTCAGCTCTGGTGAAGTGGACAGTCAGCAAGGCAGCGCCCAAGGTGAAAATGTTTCAGCTCCAGTACAACTGTTCGGACGATGAAGTCCTCATCTACAGGATGATCCCGGCCTCCAGCAATGCCTTCCTGGTGACCAACCTGGTGTCGGGGACAAAGTACGACCTGTGTGTCTTGGCCGCCTGGGACGACACCGCCACCACCCTGACTGCCACCAACGTGGTGGGCTGTGCCCAGTTCTTCACCCGCGATGACTACACCCAGTGCCAGTCTCTCCACAGCCAGTTCCTAGGGGGCACCATGATCCTTGTGGTGGGTGGCATCATCGTGGCGACGCTACTCGTCTTCATCATTATCCTGATGCTGCGCTACAAGGCCACCGACAATGAGGGGGGTGGCACGGGGGCGATCAGCAAGCTGACCAGCGTTAGTGCCACCCACTCACAGACCAATGGGGGCCGGCTGGGACAGAATGGCATGCCTCTGCCCTTGCCCAAACCCAAGGCCAAAGTAACCATCCAAGACGAGGTGGTGGAGTTTAAATGCGGATCCCTCCAGAGCagcctcacctcctcctcttcctcgtcgGGTGGCTCGATGGTTGGGGGTGGCTCTCACAGCCCCAACAGCACCCTGGCCAACATGTGGAGGCAGGCGGCCCCCTCCAAGCCCCGGGCCAACCTGGACCACCTGCTGGGAGCCTTCAACTCCCTAGAGCTCCGGGCGGGCCAGGCCAGGGGTAGGGGAGACCTGGGGGAGCCATCCTCCAGCAGTAGCACTCTAGTGGCGGGCGGCGATAGGCCCCCCACGGACAGGGAGCCCCTGCTGGGCCACACAATGGACTCACGGCTCAGCCGGGTGCTCATGCTGCCTCTAGACTCCAAGCCAAAAAGAAGCCAGTCGTTTGACATGGGGGACTGTATGGATACAAACCGACAAACAGAAAAAGCGATGGCCTCCAGCGCCTCCACGGCCACAACGCCGGTGTGCAGCTACCCCCGGCGCATCAGCAGCATCTGGACTAAGAGGAGCTTGTCTGTGAACGGCATGCTGCTGCAGTGTGACGAGGAGGGTGACATGGGAGGGAGCAAGGGGACCTTCGAGAGCCAAGAGTGGGTCATGGAGAGTACTGTCTAGGAGAGATGGTGACACACTTTACATCTTCTTAAACACTGCCCCAGGAAGGTGGCAAAACGCCTAAGTTCTGATAGACCCACCGGTGAGTGGAGAAGTCCctgcttcctccctccttccttgtTTACATGGAATGAATTCATGTTAATCTATTGTGGATCCACCATTGTTGTGACAGATAAGTAAAGCTCAAACCACACCTCTCGAACCCCAAATGGGTAAATAAGGGTGAAGACGCTCGGTGGACGgagctgattggtggagtgaggatgttttgtttttgtatgtgtgtgttctctacatgGGGAGGGGGGGACGCACAGTAATGGTCAACCACAAACTACAAGTTAGTCATGTAATGAAACCTAGTGGATTGTGCAATTTGTGTGCGGTATGGAGTCACATGGAAACTCAGAAATTGGAAGCAGGCCTGTTGTTCAAAACGAGGGCCTTAGTTTCTCAGACACAAGGAACGTAAAACAAATCACTGTATTTGTTGACTTGTAAAATGGCATACCATAAAAGCCACTCTTGTTACTGTTGCTGAGATGTTGGGCCATGCCTCTGGACTATACTACAGCTGCAAGTTAATCTGAAATATGTCATGAATTTTTATATATTTAATTTTGCCGATCAAGTACACATTGTCTAATACTGTTCTTCGCCTCTGTACAAGATGGGGCTCCGACCTCAATATTTGCATTATGAAAAACCACAATACACAAGTATATCCAGCCACATTGTTTTTATATCCACAGAACCATTTTGTTTCTTAATCCATTTGGACTGAATGGTATTTATATATCAGTGATGTAATGAATccttacaaaaatatataaaaaagatTTCATGAAAACAATGTCTGTgaatatattaactttatatacaGAGTATATATTTGAGGGTTCATTAAATAACTCCATATCTGGTACCCTATCAAGTTGGATTAATGTATAAAGCAAGCAAACAATTTCTCTTTCTTGAAGTTAACAATGTGAAAATGGTAAGGTCGTACGTGAAAATGGAACTGTTATCGTGAATTAACCCAATATAGAGCTCACAACCAGCACAAGTTAACACTCTCCAGCAAGAACGATTGAGCCCCCAGAAAAACTGCAGCTCAACATGCACAATTGTTGAGAGACAAGCATTCTTCTCCAATTCCAAGGAACATTTGTACATGTTTATGAACTTTGATGCACTGACCTTTATTCTCTGTCTGGAACTCATCACCTTAAATGATCGACATTTGAGAGTAAACATACAGCTTGCCATCCTTACCAGTTATTGGCATGAGAAATGTACAGGGAATTCGTACTGAACTATCTGTGTCTAGGAATTGTCCAACCGGATTTTTGGTTTGGTAGCATAAACTCGCAGTGTTACAAAACCCTCCATCTCTTTGTGATCGTGTCAAGACAGCCCTTCAAGAACATGAACTACAACTGATTTAACTTGAGtttacaacaaacaaaaaaactaaaaaagtCCATTGTAAGGTACCATAAACGTACAGTCCACAATGGTTATGCTCTCAACAATGGTGACGTTGTTGGCTTTTCTGTAACGTGTACAACTTGCATGTTTATCGAGGACTAACTCATAAAGACCACGAAGGACCTTATAcactatctctctatctgtcctttCTCACATTGTCTGAATGACTTCCATTGCTtctgtacattgactctgtatactGGCTTTTTTTTTGTACAATAATTGAGTGAGAATGTTCAATGGCGAAAAACAATAATGTATACCAGTGTCTTTCTTTTCTTTGTAAGCATAAAGAAATACAGAGGTGCTTCACTGTATCATTACAGCGTAACCATGTACATTTCTCACCTGGAATTGTAGACAATGTTTCGGTGGTCAAACCTATTGTTTTTTGctacaaaatgaaaaaaataaaataaaataaagatattCTAAAACATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU793332 lncRNA upstream 21220 31929659 ~ 31929872 (+) True G697046
TU793296 lncRNA upstream 45113 31905695 ~ 31905979 (+) True G697010
TU793295 lncRNA upstream 45690 31905016 ~ 31905402 (+) True G697009
TU793211 lncRNA upstream 103397 31847370 ~ 31847695 (+) True G696926
TU793210 lncRNA upstream 104095 31846521 ~ 31846997 (+) True G696925
TU793483 lncRNA downstream 6906 32117785 ~ 32118016 (+) True G697188
TU793486 lncRNA downstream 9881 32120760 ~ 32120964 (+) True G697191
TU793493 lncRNA downstream 15570 32126449 ~ 32131747 (+) True G697196
TU793497 lncRNA downstream 24389 32135268 ~ 32141382 (+) False LOC118965508
TU793498 lncRNA downstream 24389 32135268 ~ 32141382 (+) True LOC118965508
XM_036985288.1 mRNA upstream 377519 31550399 ~ 31573573 (+) True LOC110529230
XM_036985286.1 mRNA upstream 548528 31394194 ~ 31402564 (+) False stxbp6l
XM_021612319.2 mRNA upstream 548528 31394195 ~ 31402564 (+) True stxbp6l
XM_021612316.2 mRNA upstream 558018 31381107 ~ 31393074 (+) True ddhd1b
XM_021612317.2 mRNA upstream 574504 31368752 ~ 31376588 (+) True psmc6
XR_005052855.1 mRNA downstream 24317 32135196 ~ 32141382 (+) False LOC118965508
XM_021612333.2 mRNA downstream 41822 32152701 ~ 32156250 (+) True LOC110529798
XM_021612334.2 mRNA downstream 52442 32163321 ~ 32166068 (+) False LOC110529799
XM_021612335.2 mRNA downstream 52461 32163340 ~ 32166068 (+) True LOC110529799
XM_021612338.2 mRNA downstream 61333 32172212 ~ 32193704 (+) True LOC110529801
TU790056 other upstream 2158345 29790997 ~ 29792747 (+) True G694036
TU789468 other upstream 3012819 28930760 ~ 28938273 (+) False cdca4
TU789469 other upstream 3012819 28935489 ~ 28938273 (+) True cdca4
TU789102 other upstream 3245340 28704850 ~ 28705752 (+) True G693207
TU789022 other upstream 3392719 28495285 ~ 28558373 (+) True btbd7
TU796067 other downstream 2016714 34127593 ~ 34128301 (+) True G699605
TU797136 other downstream 3343969 35454848 ~ 35462040 (+) True LOC110529856
TU797266 other downstream 3502285 35613164 ~ 35614666 (+) True G700685
TU797474 other downstream 3793170 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 4589559 36700438 ~ 36700739 (+) True G702415

Expression Profile