RNA id: XM_021612335.2



Basic Information


Item Value
RNA id XM_021612335.2
length 1293
RNA type mRNA
GC content 0.38
exon number 6
gene id LOC110529799
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 32163321 ~ 32166068 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCCACAGTCAGCTTTGGGAGCGCCTATCCCAAGCTACTCGGCCTGTGAATTTGCCTGGTGTCAATTTGGTCTTTCACTGCAAAATGACAGAAAAAGGACTTACAGATGAGGCTGTGTCCGCAGCGTGCAAAGAAGGGGACCCTATCACCCAGagTTGCAAGCTGAGAACATAGCTGAGAAGTAAGGGGGTCAAGACATATTTTGCAAGCAACAACTCGTCCCGACActcccccttcttctctctgtctccctctgtccctccccaggATTACATGTTGCAGCAAACTATGCTGAGGGTGAAAGACCCACTCAAGTCTTTAGACTTCTACACACGCATCATGGGCATGACGTTGCTTCAGAAAATAGACTTCCCATCAATGTGCTTCACACTCTACTTCCTGGGTTATGAGGAAAAGAAGGAAATCCCTGCAGACATAAAGGACAAAACAGCATGGACTTTCTCCCGACGAGCCACCATTGAACTCACACACAACTGGGGCTCTGAATCAGATGAAAATCTATCTTATCACAACGGAAACGCTGAGCCAAAAGGTTTTGGGCACATCGGAATTGCTGTACCTGATGTTTATGCAGCCTGCAAAGTATTTGAAGAAAAAGGAGTAACATTTGTTAAGAAGCCAGATGATgGTAAAATGAAGGGACTGGCCTTTATACAGGATCCTGATGGATACTGGATTGAGATTTTGAGTCCAAACAACATGTTCACCGTAACGTCATCCAAGCGTCAAACTGAGATAGTACAAACTGACTTGGTCAGAAAAAGGATGTGATGAAAAAGTAAGAGAGAAATTGGAGGAACCAAAGGGATGTGAGGAAATTAAGAGGTGAAGATTGAGTATTTGCTTACGATTGGGATCACATACAGATACCCGCTGAAGGCCTacttaaaataacaatagcggaaGTATATTTTAATATTTTACAAATACACTGACGTATACTTAAATATACTACAAGTTCATATAATATACTGCAAATACGAGATATACTTTTCTAGTATATCTTAGgtgtactatacatattatatcATTACACTTCAATCCAATTTTTACAAGTGTACTTAAAATGCATTGATTTTCAGTCTTTAAACTATATGTTACCTATCATTACACTTAACACACTTATtacaattgtatttttaattaattgttttcAGTGTTTTATTATACTATATGTTCATTATCATTACACTTAAACACACTTACAAATACTTCATATACTTTAATTGTACTTTAGTATATTCATTAAAAATACACTTAGAGTTGTTTTTAA

Function


GO: NA

KEGG:

id description
K01759 GLO1, gloA; lactoylglutathione lyase

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU793504 lncRNA upstream 15374 32147566 ~ 32147966 (+) True G697204
TU793497 lncRNA upstream 21958 32135268 ~ 32141382 (+) False LOC118965508
TU793498 lncRNA upstream 21958 32135268 ~ 32141382 (+) True LOC118965508
TU793493 lncRNA upstream 31593 32126449 ~ 32131747 (+) True G697196
TU793486 lncRNA upstream 42376 32120760 ~ 32120964 (+) True G697191
TU793521 lncRNA downstream 1043 32167111 ~ 32167338 (+) True G697214
TU793522 lncRNA downstream 1387 32167455 ~ 32167671 (+) True G697215
TU793524 lncRNA downstream 2512 32168580 ~ 32168796 (+) True G697217
TU793530 lncRNA downstream 48381 32214449 ~ 32217565 (+) True G697221
TU793551 lncRNA downstream 58621 32224689 ~ 32225047 (+) True G697242
XM_021612333.2 mRNA upstream 7090 32152701 ~ 32156250 (+) True LOC110529798
XR_005052855.1 mRNA upstream 21958 32135196 ~ 32141382 (+) False LOC118965508
XM_021612328.2 mRNA upstream 52461 31951092 ~ 32110879 (+) False LOC110529794
XM_021612329.2 mRNA upstream 52461 32077132 ~ 32110879 (+) True LOC110529794
XM_036985288.1 mRNA upstream 589767 31550399 ~ 31573573 (+) True LOC110529230
XM_021612338.2 mRNA downstream 6144 32172212 ~ 32193704 (+) True LOC110529801
XM_021612340.2 mRNA downstream 28139 32194207 ~ 32214087 (+) False LOC110529803
XM_021612341.2 mRNA downstream 28156 32194224 ~ 32214087 (+) True LOC110529803
XM_036985290.1 mRNA downstream 50508 32216576 ~ 32255838 (+) False LOC110529800
XM_021612336.2 mRNA downstream 59175 32225243 ~ 32255838 (+) False LOC110529800
TU790056 other upstream 2370593 29790997 ~ 29792747 (+) True G694036
TU789468 other upstream 3225067 28930760 ~ 28938273 (+) False cdca4
TU789469 other upstream 3225067 28935489 ~ 28938273 (+) True cdca4
TU789102 other upstream 3457588 28704850 ~ 28705752 (+) True G693207
TU789022 other upstream 3604967 28495285 ~ 28558373 (+) True btbd7
TU796067 other downstream 1961525 34127593 ~ 34128301 (+) True G699605
TU797136 other downstream 3288780 35454848 ~ 35462040 (+) True LOC110529856
TU797266 other downstream 3447096 35613164 ~ 35614666 (+) True G700685
TU797474 other downstream 3737981 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 4534370 36700438 ~ 36700739 (+) True G702415

Expression Profile