RNA id: XM_021612338.2


Basic Information

Item Value
RNA id XM_021612338.2
length 3741
RNA type mRNA
GC content 0.47
exon number 11
gene id LOC110529801
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 32172212 ~ 32193704 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCGCTATTGTTTCATGGAACAGTGCCGTTCTCCCCACCCTAACAACATCCGGGTTGTCACCCTACTTAGTGGTGTTTGCAATGGTAGCGTTTTTTTAGTACCTATAGCAATTATTCATGACGAAATGTTCAATACGATCATTTGATTGAATAAAGGGGAAAATAACGTCAAGGAAGAGGCTTCGTGGAAGGGTGAACGACGTGGATATGCTTATTGTGCAGATGTTATTGAGACGCCCCAAGTCTAACCACAATGAGTAGCAACAGCCATCCTTTGCGTCCACTGGCCTCAGTGTCAGAGATTGACCACATCCATCTACTCTCCGAGCAGCTGGGTGCTTTGGTTCCAGGTGAAGAGTACAGTGATGTCACCTTCATTGTGGAGGAGAAACGCTTTCCGGCCCATAGGGTCATCTTGGCAGCACGCTGTCACTACTTCAGAGCTCTGCTGTATGGCGGGATGAAGGAGTCCCAGCCGCAGGCGGAGGTGACCCTGGAGGAGACGCGAGCCGAGGCCTTCTCCATGCTCCTCAACTACCTTTACACGGGCCGGGCTAGCCTCAGCTCAGCCCGCGAGGAGGTGCTGCTGGACTTCCTGGGTCTGGCCCACCGCTATGGCCTCCAGCCACTAGAGGACTCTACCTCAGAGTTCCTGCGCACCATCCTGCATACGCACAATGTGTGTTTGGTGTTTGACGTGGCCAGCCTGTACTGTCTGAGTGCGCTCAGTGCAGCGTGCTGCGCCTTCATGGACCGTCGTGCCCCGGAGGTCCTGGCCTCAGACGGCTTCCTCACATTGTCCAAGacTGCTCTGCTGACCGTGTTACGGAGGGACTCATTTGCAGCGAGCGAGAAGGAGATCTTCCAGGCGCTGTGTCATTGGAGCCGGCAGAATGGCGAGGGAAGCGCCACGCAGGATGTGATGGCAGCTGTGCGGCTGCCGCTCATGAGCCTGACGGAGATGCTAAACGTGGTGCGTCCCTCGGGACTGCTCAACCCAGACGACCTGCTGGATGCCATCAAGACCCGCTCAGAGAGTCGTGACATGGACCTCAACTACCGCGGCATGCTCATCCCAGAGGAGAACATTGCCACCATGAAGTACGGGGCCCAGGTGGTGAAGGGAGAGCTGAAGTCAGCTCTGCTGGACGGAGACACCCAGAACTACGACCTGGACCACGGCTTCTCCAGACACCCCATAGAGGAGGACGGCCGCGCTGGCCTTCAGATCAAACTGGGCCAGGCCTCTATCATCAACCACATCCGCATCCTGCTCTGGGACCGGGACAGCCGGTCTTACTCCTACTATATTGAAGTGTCCATGGATGAGCTGGATTGGGTGCGTGTTGTGGACCATTCCAAGTACCTGTGTCGCTCTTGGCAGAACCTCTTCTTTACACCACGTGTGGCCAGGTATGTGCGCATTGTGGGGACGCATAACACTGTCAACAAGGTCTTCCATCTGGTGGCTTTCGAGTGCATGTTCACACACCGCTCCTTCACTCTGGAAAAGGGTATTCTCGTCCCAAATGAGAATATGGCTACCATCGCAGCCTGTTCCAGTGTCATCGAGGGTGTTAGTCGGAGCAGAAACGCTCTGCTCAACGGGGACACGCACAACTACGACTGGGACTCGGGCTATACCTGTCACCAGCTGGGCTCTGGGGCCATTGTCATTCAACTGGCTCAACCCTACACTATTGGCTCCTTAAGACTGCTACTGTGGGATTGTGATGAGCGATCCTACAGTTACTACATTGAGATCTCCACCAATCAGCAGCAGTGGACAAAGGTGGTGGACCGCACCAAGGTGCCATGTCGATCGTGGCAGACACTCAAATTCGACAAGCAGCCTGCCTCTTTTATTCGCATCGTGGGAACTAACAACACTGCAAATGAGgtgTTCCATTGTGTCCACTTTGAGTGTCCGACCCAGTTGGACACGGAGGTGAAAGACGGTAGTCTTGGGCAGGCATCACCTTTTGAGTCCAGTTCCACATCCCAGAACCCTAGACCCATGCAGCCATCCTGCACCCACAgccttctcccctcctcatcctcatcctccagTTCCTCACAACCCCACCTCTGAGAGAAAAGGAAAACCCCCAAGAAAACAATTTTGCACAACCTTTATCTATCACACAAGATGCACTGCTAAAATGCTGCTAAGCATACAATTCATTTTGATAACAAAAATAAGCCTCTAACACGCTAACAGAATCTTACATCAATTTCAGGTTTTTAGGGTGCTCATACAGTCCTCCCTGTCTGAAATGATAGACAATGGTGGGGAAAAAGGCTATGGATTAAATTGGTCAATACATTTCCTGTGAAGGTATTAGCCCACATTTGCTGCCGGTTTAAGGGTACTCAGTTGGCACTCTTCAAAGCCTAGTCGGGCCAGGTGCTATCCAGCCAGTGGAGAGGCAAACAGTACTGCTCATCCAAAGATTAACCAATGCAATACCACTATCAATGATTTTCTACTCATGTTGAAAAAGAAAAATCataggtgaacatggtcatattCACCTATGCTCAAGGTTTATATCTGGGAAATTAATTTGATTCACCCCCCCATTTGGACTTAAAGACTAATATTGCAGTCTTGGCTGAGCAGCACTTCAATGTTTGGTAAATTCATCAGCACTTTGTGGAAATCGGAGGGAGAATCTATGAGCAGCTGATATTTGGCACTTTATTGTTCCCCATATTTACTGTAAGAAAGATGTTACCTAGGTCTATTAAGCACTGGGGAAATTATGCAGTGCTGGTAATAGCTATTTCTGTCTATGGATTTGTTTTTGTCATTTTATTGTTGTCCTCACCTTTATGAGGACAACTTTAATTGCTGCTTTGTGCTTACTGCTAAATGTAGATATGATATGTATATTGTCAGTGATTTTGTTTGTGTGGTTTGATTTGTTAAGTTTTCTGTTGGCTCTACGGTTTATTTCTCAGTGCTGTGCTTCCTATTAtctctcacctcttccctctttctttgtTTTTTGGCTCTTAATATGGCTCTCTACTTTTTCATATTTCCTTTGATCTCCTTTGTTATTTTACAATCTTTCAAGTAGATTTGAGCAATCCTTTAGATACTTTCACATTGCTGCTATTGCATGAGGGCTGAACATTGACTTAAAGTAAAATTTAAGTAGAAAGCAGAGATTACCCTTCTCATATCTATATATTTTTCCTGAATAGTTTTGATTGCAGTTTGTTGTATCATCTTAGTAcaatattactgtactatatcacCATTGCTTGGGATGACTTTTATCCGTTTTTCTATATCACTGCCATTAACATACGTTGGGATTTATTTTCAGAATAGGTCTCTTTTGTAGATGTTGGTAGAGATTCAGCAGTAAAGTCTCTCAACCTCTTAGTGTTCAAAAAATATTGATTGATTTCTAAAGTCAAGTAGGTGTTGCATTAGTGAGTGCCAAAGGCTTCTTCAGACTGGTGATCTCTGCTTATGGCCAATGTTAGTGGGCCAATACATGTACATTTTATTGCAGGCAACGGCATTAAATGTTGTCTGACTCATTTTGCAGTACTTATTGTTAGCAACCCTCATCCAACTTGAAagaccaaatgttttttttttttacattgctgATTTAATACAGGTTTTAAATGCACCCATGTCCATCCTCATGATACCCTACCAGCTGGCAATCAAGCTTTTAAACAATACTGTATTAAAGATGTGGAACAAAACATTTACAA

Function

GO:

id name namespace
GO:0007155 cell adhesion biological_process

KEGG:

id description
K10481 BTBD9; BTB/POZ domain-containing protein 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU793524 lncRNA upstream 3416 32168580 ~ 32168796 (+) True G697217
TU793522 lncRNA upstream 4541 32167455 ~ 32167671 (+) True G697215
TU793521 lncRNA upstream 4874 32167111 ~ 32167338 (+) True G697214
TU793504 lncRNA upstream 24246 32147566 ~ 32147966 (+) True G697204
TU793497 lncRNA upstream 30830 32135268 ~ 32141382 (+) False LOC118965508
TU793530 lncRNA downstream 20745 32214449 ~ 32217565 (+) True G697221
TU793551 lncRNA downstream 30985 32224689 ~ 32225047 (+) True G697242
TU793572 lncRNA downstream 90578 32284282 ~ 32284505 (+) True G697260
TU793584 lncRNA downstream 110192 32303896 ~ 32304102 (+) True G697270
TU793594 lncRNA downstream 127736 32321440 ~ 32322745 (+) True G697280
XM_021612334.2 mRNA upstream 6144 32163321 ~ 32166068 (+) False LOC110529799
XM_021612335.2 mRNA upstream 6144 32163340 ~ 32166068 (+) True LOC110529799
XM_021612333.2 mRNA upstream 15962 32152701 ~ 32156250 (+) True LOC110529798
XR_005052855.1 mRNA upstream 30830 32135196 ~ 32141382 (+) False LOC118965508
XM_021612328.2 mRNA upstream 61333 31951092 ~ 32110879 (+) False LOC110529794
XM_021612340.2 mRNA downstream 503 32194207 ~ 32214087 (+) False LOC110529803
XM_021612341.2 mRNA downstream 520 32194224 ~ 32214087 (+) True LOC110529803
XM_036985290.1 mRNA downstream 22872 32216576 ~ 32255838 (+) False LOC110529800
XM_021612336.2 mRNA downstream 31539 32225243 ~ 32255838 (+) False LOC110529800
XM_036985289.1 mRNA downstream 31539 32225243 ~ 32255838 (+) True LOC110529800
TU790056 other upstream 2379465 29790997 ~ 29792747 (+) True G694036
TU789468 other upstream 3233939 28930760 ~ 28938273 (+) False cdca4
TU789469 other upstream 3233939 28935489 ~ 28938273 (+) True cdca4
TU789102 other upstream 3466460 28704850 ~ 28705752 (+) True G693207
TU789022 other upstream 3613839 28495285 ~ 28558373 (+) True btbd7
TU796067 other downstream 1933889 34127593 ~ 34128301 (+) True G699605
TU797136 other downstream 3261144 35454848 ~ 35462040 (+) True LOC110529856
TU797266 other downstream 3419460 35613164 ~ 35614666 (+) True G700685
TU797474 other downstream 3710345 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 4506734 36700438 ~ 36700739 (+) True G702415

Expression Profile