RNA id: XM_021612341.2


Basic Information

Item Value
RNA id XM_021612341.2
length 2677
RNA type mRNA
GC content 0.47
exon number 6
gene id LOC110529803
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 32194207 ~ 32214087 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAATGAACGCCATTTTGATTCTGTTGATACGGCACAGTACATTTTATTCTAAATGAAGGTCTAGGTACCGGTAGTTTCCTGAACAGCTTACTTCGTACAGTTCGGCCCACTGAAGATTGGGGGACGCAGCACATGGTGTCCAGTAAAACCATGAACCTCTGCTCAAAATGTTTTGCTGATATCGAGCAGAAGCAGACAGATGAGGACTGTACCTCAAAGCCCAGCCCAAGCACTGGCAGTAGCCAATTGTCTGTCTTCAGTGGCGAGACGAGCAGCAACAGTAGCCAATCCCTATCGTCGTCACCACCCACTAGCTCTGAGCAGCCATCGGTGTCAACCGAAGACCCTGTCCCCACATTACCAACTACACAGGAGGGAGTATCGTCATGCACAGAAACAGCCCAAGGCACCCTCTGTACACCCACAAAACGTCCTTGCGAATCAGCTTCAGGGTCGGAGAGCGAGGCGTCACCAGAGAAACGGGCACGGCGGGACTTGGAGGGGGAGGCGGCGAGCGAGGAGCCTAGCCGAGGACCCAAGCAGAAAAACCGCCGGCGCTGCTATCGCTGCCAAACCAAACTGGAGCTGGTACAGCAGGAACTGGGATCCTGTCGCTGCGGCTACGTGTTCTGCATGCTCCACCGTCTACCTGAGCAGCACGACTGCCTGTTCGACCACCTGGGACGTGGGCGCGAGGAGGCCGTCCTCAAGATGGTGAAGCTGGACCGCAAGGTGGGCCGCTCGTGCCAACGCATCGGAGAAGAGTGCTCTTGAGTTGCCCCCGCTGCCCGCCCGTCACCACCCATCCACACAACAGAGAAGCGGCACTTAAATAGAGAGGGGGACGTAAGAGAGagcaaggaagagagggagggaaggggaagaaggagagagcatGGTTGTAATAGATCCACACTTACCCCACCATTCTGGAGCTGAGGGTTGTTGACCCACTCCTGTTAGTCTTGACCCCTCCAGAGGGGAACAGTTTGGACACTGCCTTGGACACGGTCACCATGGCAACCTCTGGAGCCACACTGTCACTATCGCACGTTCGTTTTCACACAGCCTTAACTTgtcagaggggtatactacaaagcaggatcaattgGTTAGCCAGCTATCTTTGATGAACAAACAGAATTAACTATTGATTTTCAGGTTCAATTAAGAAAGCTCAACTTAGCTATGTGTTTTTGGTTGAGTAAATTGGACCATGCCCATTTCAAGCTTATCTTTCTAAAGAATTAAGTTATTTCACAATATTTACACGTTAGCTGgcaaactattttttttatttttaatcacaCAGCAGCGCCATCGCTCAACAACAATCTTACCCCTCAAGTCTTTGTTTCACTGTTCACAAAAGATTAGTCTGCACCAGTACTTTCTAAATGAAACTGACCTCTTTCTCGGCTCCTTGGTCATCTTGGTAAGCAGGTTTTCAGTACATCGTTGGTGACAGATAAACGGAACATAGCCCTGTCTGTCCCTTGACCACTCCTCAGGTTGTAGGGTGGAATGTTgacctttacccccccccccccccccctccccctcttccttttcTGCTCCCTCCTCACCCAATGTCTCCTGCATGGCATTGGATTGAAATAGCGTGTGTTAAGGACGTCGTCGTCCCCGGACATGGGTCAGTTGTTGTGTGGCCATGTTTGTTCTTATGAGACTGCTAGACTGGTTTGACTACAAACCGGACCACAAACCCTTGTACTGCAGCCTTCCTCCTCCGCTTCTCTCAGCTGGATTAGAGTCTGAACAAATGGActagagtcacacacacagaacctCTCTGAAGCAGAAGCCCTTCTCTGCCTGCTGCTCTTTGAATAAGTGATGCTGTTGCTGTTAATGCTCTCCTTCTGTTTTGTAATACCCTGTGCACTCTTACTCCCTTTATTtttacatacacactacacaatcCCTGACTCACTGGACTGTCAAACTATGGCTCTATTCGTATGGCCATACAAGCAGACCACTTAAAAAGCATGCATAATACAttgcttcattttttttttttgtagtatGCTAGTCTGTTCCATATTTTACTCCTCCTACCCCAGTCACACTACTTGAGTGTGCTGGTCCCAATGCTCATCTCATTCTTCTTCCTCACTTCCCTCTCTGCTTCCTTCTCTTACTGGCCCCCTTCCTCCGGTGCGAGGAATGACTGAAGGATGGCAGGAGCGACGTGTAGAGTGGCATAGTGGGTGGTTTCATTTTGGTATTTCTGCGACCCGTCATCTCTCGAGTGCCGATGGGGAAAATTTAAGAAATGTTATCTTTCTGTATCTTAAAAGAAATTTTATTTAACCATATATTATTTTGATTTACTTACACATTAGCATATagctgcatatttagttaaatgtATAAAACCAGAACAATTGTTTTATGTTCTCcttttatttgattattttccCCTTTTTGCTGAGGATGAATAAACTGGATTAGAGGAATTGGGTGGCCTGTGTGATCTTTAAAACATTTGAATTATTTCATTAAAATAAGGGTAAACATTTTGCATTATTTTCTACAGAAACTGAAAAGCAGTTCATCAAAACAAGTGAAAATGGAAAGTGTGAACCTGATTCTATGGAAAATTTTGCAAATGTCTGTAACGAaaaataaaaagctctctaaaaTAGACAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU793524 lncRNA upstream 25428 32168580 ~ 32168796 (+) True G697217
TU793522 lncRNA upstream 26553 32167455 ~ 32167671 (+) True G697215
TU793521 lncRNA upstream 26886 32167111 ~ 32167338 (+) True G697214
TU793504 lncRNA upstream 46258 32147566 ~ 32147966 (+) True G697204
TU793498 lncRNA upstream 52842 32135268 ~ 32141382 (+) True LOC118965508
TU793530 lncRNA downstream 362 32214449 ~ 32217565 (+) True G697221
TU793551 lncRNA downstream 10602 32224689 ~ 32225047 (+) True G697242
TU793572 lncRNA downstream 70195 32284282 ~ 32284505 (+) True G697260
TU793584 lncRNA downstream 89809 32303896 ~ 32304102 (+) True G697270
TU793594 lncRNA downstream 107353 32321440 ~ 32322745 (+) True G697280
XM_021612338.2 mRNA upstream 520 32172212 ~ 32193704 (+) True LOC110529801
XM_021612334.2 mRNA upstream 28156 32163321 ~ 32166068 (+) False LOC110529799
XM_021612335.2 mRNA upstream 28156 32163340 ~ 32166068 (+) True LOC110529799
XM_021612333.2 mRNA upstream 37974 32152701 ~ 32156250 (+) True LOC110529798
XR_005052855.1 mRNA upstream 52842 32135196 ~ 32141382 (+) False LOC118965508
XM_036985290.1 mRNA downstream 2489 32216576 ~ 32255838 (+) False LOC110529800
XM_021612336.2 mRNA downstream 11156 32225243 ~ 32255838 (+) False LOC110529800
XM_036985289.1 mRNA downstream 11156 32225243 ~ 32255838 (+) True LOC110529800
XM_021612339.2 mRNA downstream 42231 32256318 ~ 32268368 (+) True LOC110529802
XM_021612357.2 mRNA downstream 73077 32287164 ~ 32289011 (+) False grcc10
TU790056 other upstream 2401477 29790997 ~ 29792747 (+) True G694036
TU789468 other upstream 3255951 28930760 ~ 28938273 (+) False cdca4
TU789469 other upstream 3255951 28935489 ~ 28938273 (+) True cdca4
TU789102 other upstream 3488472 28704850 ~ 28705752 (+) True G693207
TU789022 other upstream 3635851 28495285 ~ 28558373 (+) True btbd7
TU796067 other downstream 1913506 34127593 ~ 34128301 (+) True G699605
TU797136 other downstream 3240761 35454848 ~ 35462040 (+) True LOC110529856
TU797266 other downstream 3399077 35613164 ~ 35614666 (+) True G700685
TU797474 other downstream 3689962 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 4486351 36700438 ~ 36700739 (+) True G702415

Expression Profile