RNA id: XM_021612342.2


Basic Information

Item Value
RNA id XM_021612342.2
length 1623
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC110529804
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 32214451 ~ 32217572 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCTACCGGATGTTGATACAGTCTGCGGAACAGCTGTGAGAGAACAACAAAGCTGACGCCACTTCTAGCTACAGAATCGACGAGAAGGACGAAAAGAAGgtgaaaatacaacaacaaaactgGATTCGAGGTTGATAAAGACTATAGAAGTGGTCAAGAAAACAGGTTATTAACATTCGTGTCGACAGAACTCTGAAAATTACAGATTCAAGGTCGGTCTCTGCTTACAACAGCACTATGGGCCGGATCTTCCTGGACCACATCGGCGGGACCCGCCTCTTCTCCTGCGCCAACTGTGACACCATCCTGACCAACCGCTCTGAGCTCATCTCCACGCGCTTCACTGGCGCCACGGGCCGAGCCTTCCTCTTCAACAAGGTGGTGAACCTGCAGTACAGCGAGGTGCAGGACCGTGTGATGCTGACGGGCAGACACATGGTGCGAGACGTCAGCTGCAAGAACTGCAACAGCAAGCTGGGCTGGATCTACGAGTTTGCCACAGAAGACAGTCAGCGCTACAAGGAAGGCCGCGTCATCCTCGAAAGGGCGCTAGTAAGGGAGAGCGAGGGCTTCGAGGAGCATGTGCCCTCTGATAACTCCTGAGTCCCCCGTCCCTCCTTTCTGCCTTGTGCACCCAACATCTCTCCCAATCCCCAGTGTCCCCTACACTCCTCTCCTTATAGGCAACTACCTGTGTATCAGCTTCCCACCAGCAAGAATTGTGTCGAGCTAGACAAGCCTGTAATTATGTCCGCCCCTCACACATAttgtacacaacatttgagaaTGCACTCGCTCACAGGCTATAGTGCTTATAATGCATATAATGTACATGCATAAGATTCTGCACGATACATGTGTATACATTGGACTACAACTGCCTGAAGAGTAGGGGTTGTGGTGGGGGGAGTAACTTAATGACCCAAAGTGGAGAGCATGGACAGATGCTAATGTCTTTGTCAGTGATACAGCTGTGTATGATAAAACCGCTGTTGCGTGagagcttggggggggggggggtgagtgatGCTTGTGTTTAGGATGAAATATTATTTAAGTTTTAGTGAGAATGGGTGTGAAAATTGATTTGAGGAAATTATCTTTCTGAATATTGTCATTAAACCCAGTTTCCATTTGCTTTTATTAACAAATATTAGATTTGATAGTGCTGATTTTAGTTGACTGTTTGCACATTATGAAACTGATGTCAACCCTCACTTTGATCCCGATGACAAATGCATGTGTGTACTAAAGCCTCATGTCTGCCAATGGACGCCTAGACAATAGAACCTGTGATCAACCTCAAATGCTGACAATTGTGTAACAATTATCAAAAGACAACTTGACCATTGTGTAAATGTGACCAAAAAAAACCATGAACCGGCATTGTTGACAATATTGTGGTTAAGTTCTGTATTAGGATTGGTCAGTGCTGTGTTTTCTTTTTGGGTTGCATAGTCTTgcgatgccatccttccaatccTCGTTCATCACTCAGCTATTGGAACAAAATTAAATTGTGAGAAAGCCTGGAAAACTAAGTAGGAGTTGAGTTAAAGCTACTGTTTTTTTCTTTCAGGCCTCCGGGTGATGGATTATAATAAAGAAATTGATCATATGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU793897 lncRNA downstream 54403 32159223 ~ 32160048 (-) True G697561
TU793896 lncRNA downstream 55796 32158354 ~ 32158655 (-) True G697560
TU793895 lncRNA downstream 56232 32157997 ~ 32158219 (-) True G697559
TU793889 lncRNA downstream 64634 32149612 ~ 32149817 (-) True G697555
TU793875 lncRNA downstream 88540 32125696 ~ 32125911 (-) True G697544
TU793944 lncRNA upstream 7035 32224607 ~ 32224813 (-) True G697604
TU793972 lncRNA upstream 37949 32255521 ~ 32268603 (-) True G697632
TU793982 lncRNA upstream 67318 32284890 ~ 32285129 (-) True G697642
TU793983 lncRNA upstream 85298 32302870 ~ 32303081 (-) True G697643
TU793984 lncRNA upstream 85585 32303157 ~ 32305119 (-) True G697644
XM_021612332.2 mRNA downstream 79257 32132683 ~ 32135194 (-) True LOC110529796
XM_021612327.2 mRNA downstream 510926 31657632 ~ 31703525 (-) False LOC110529793
XM_021612326.2 mRNA downstream 534649 31657632 ~ 31679802 (-) False LOC110529793
XM_021612325.2 mRNA downstream 608260 31602683 ~ 31606191 (-) True LOC110529792
XM_021612323.2 mRNA downstream 710461 31486817 ~ 31503990 (-) True LOC110529791
NM_001160613.2 mRNA upstream 51523 32269095 ~ 32278234 (-) True bpnt1
XM_021612356.2 mRNA upstream 68486 32286058 ~ 32287169 (-) True LOC110529808
XM_036985295.1 mRNA upstream 71492 32289064 ~ 32300567 (-) False LOC110529806
XM_021612352.2 mRNA upstream 71492 32289064 ~ 32300571 (-) False LOC110529806
XM_021612345.2 mRNA upstream 71492 32289064 ~ 32300579 (-) False LOC110529806
TU792983 other downstream 534716 31657726 ~ 31679735 (-) True LOC110529793
TU792778 other downstream 736424 31477354 ~ 31478027 (-) True G696499
TU792310 other downstream 1359044 30855107 ~ 30855407 (-) True G696073
TU792305 other downstream 1367242 30846902 ~ 30847209 (-) True G696068
TU790963 other downstream 2152283 30038588 ~ 30062168 (-) True G694858
TU794118 other upstream 281227 32498799 ~ 32499410 (-) True G697774
TU794745 other upstream 771673 32989245 ~ 32990061 (-) True G698356
TU795919 other upstream 1725450 33943022 ~ 33952356 (-) True G699468
TU795985 other upstream 1805719 34023291 ~ 34023885 (-) True ankef1a
TU798118 other upstream 3365426 35582998 ~ 35589877 (-) True G701454

Expression Profile