RNA id: XM_021612336.2


Basic Information

Item Value
RNA id XM_021612336.2
length 3511
RNA type mRNA
GC content 0.51
exon number 42
gene id LOC110529800
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 32216576 ~ 32255838 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGAATCACATCAAACCGCGAGGTTGAGGAAGCAGGACGGTAAAGGACAATAAGCCCAGACAACTGAGCTgttagacaaacagacagatagtcagacataaagacagacagaagacAACAGGTGGCCTATGAGGACAAACTTTGACAGACAAAGGATGCTTCCATTACTGGTTATAGCTCTGCTGGGGTTCTCCACAGAACCAGCCTCTGCACAGCCTTGCACTCAGATCTCTCTCTCCAAGACCCTTCCCTCCTCAGCTCACAGTGTCAGACCCTCAGATGTGGCTGTGCTCTCTGCCATTGGActtccccacacacacagcaGCGAGCTGTCCAGAGTGTTATCGAGACTTCATGAGTTGCTGACCATGTTTAACCCTGCAATGACCAGTACTCTCCTTGGTCAGACAAACCTCTATTCTGAATCCTCACAGCACAGGGCTCTTGTCGAGCAGGCAAAGGAACTACCACTCTCCCTCATGAGTAACCAGGCCGTTGAGCTAGACACAGACTGGAAGCTGGTGATGCTATTCGTTCAGGTGGATGAGCTCTGTGTATGTCAGGACCAGgtcaGCGAGACAATCAAAGCAGCTGTCCATCAGGTGGATCTTGCGCTGCAGGTGCTGCAGTCGCAGTTGAAGCGGACCATTGTCAATGTTGCACTGTGGTATGGAGAGTATGATACTGGATTTCGTTATCAGAACAGGATGTGTCAATGTATGGAGGAAAAACATGAAGGGGAGCTCAGACTACTGAAGGCCATCCTCACTCAAGTCCTCCAGGAGTCCCTTGATCGACACCTGGTGGAGAAGCAGTGGTACAGCAACAGAGATGACTTCACCGTCCTACTGCAGGATGCTCCCTTCATCACATCAGAACCCGCCTCTTTTATTAGCGCTGCCCCCAGAGCGGGTGAACAACACACCGACAAACTGGCAGTACAGATGTGGGCCAACTTGctgcagcccATCATAGGCCAGCAGAACATGGAGGAAAATAGCATGATTATCTCTGTGCTATGCCCCAGTGAGgaccgGCCCTTCCTGAGAACAGAGAGTAACTCTCCATCAGATCATACCAGtgagccctctcctcttctcaaccCTATCATGGGCTCTCATATGCCCTGCGAAGACCGTAGCCCTTCCAACTCCCCACCCACCTCAGTTCACGCCCTCCGGCCTGGCGATATTAAAGTAGTAGCTGCAGTGGGCGACTCTCTGACTGCGGGCAACGGTGTCGGATCGGGATCCAGCGTAATCAACCTACTGGATGTCCGGACGCAGTACAGGGGGTTATCATACAGTGTCGGTGGAGACGAGAACCTCACCACCGTCACCACTCTTCCCAATATCCTGCGTGAGTTTAACCCCTCCCTGACTGGCTACTCAGTGGGCAAAGGCAAAGAGCACACCACTCAGGCCTTCCTCAACCAGGCTGTGGCCGGAGAAAGAGCCAAGGACATCCCAGACCAAGTGCGAGCACTGGTGGCCAGGATGAAGAATGACTCGAGAGTTAATTTCCAAGACGACTGGAAAGTTATCACTTTGTTCATTGGAGGCAATGACATGTGTGAGTACTGCTACAACTCTCTGTTTTACTCCACTGACAACTACGTGCGCCACATTCGTGAGTCTCTCGATTACCTTCATAAACAGgtgccAAGGGCCCTGGTCAACCTGGTGGAGCCTCTTTACATCCCCATTCTGAGACAGATGCACACAGAAGAAAATGCCTATCTCAAGTGCCCTACCTGGCTTGCCAATATTCTGTGTCCCTGTGTCATCTCGCCTAAGGAGGGCTCAGTAACACTTCAGAAACTCCACGTTCTGAACAGAGATTATCAGCGTGGACTGCATGAGCTAGTGGAGTCAGGACAATACGACACCCATAACAACTTCACGGTGGTCCTGCAGCCTTTCCTACGAGACATCATCATTCCAGTGATGGAGGATGGACGTCCAGACCGCACTTACTTCAGTCCTGACTGCTTCCATCTCAGTCAGAAGGCCCAGACTCAGATGGCTCGTGGTCTCTGGAACAACATGCTGGAGCCTCTGGGCAAGAAGACTGCCCAACAGGACTTTAATGATGCTATCTCTGTGAAATGCCCCTCTAAGACCTCACCATTCGTGCGGACCTATGTCAACAGCAACTACACCTATGAGGAACCCACCCCAACACTTCCACCAATTACAAACTGGGGAAGTGACTTCTCTTGTGGGAATTTTGCTCCATCCACCTCTGTGCCTACAtcagTTCATAAGCTGCGACCAGGAGACATCAAGGTGGTGGCAGCACTGGGAGACTCAAACACTGCAGCAGTTGGAGCCAAGGCAAAGAACGTGTTGCAACTCAACACGCAGTATAAAGGAGTGTCATGGAGTATCGGAGGAGATCAGACCTTGGACACAGTCACCACACTACCAAacaTCCTGAAGAAATTCAACCCTTCCCTCCAGGGATTCTCCAAGGGTCAGGGCTTTCTGCAGAATAACGGCTTCAACATGGCGGTGCCTGGAGCCATGGCCTTTGACATCGCAGCCCAAGTCCAAGCTCTCATCAAGGCCATGAAAGATGACAAGAAGGTGAATTTTGAACAGGATTGGAAGCTAGTGACCTTATTAGTTGGTGCCAGGGATCTGTGTGATTATTGCATGGACCATAACAACCTTACACCCAAGAACTACAGTGAGAATCTGATGTTGAGCCTGGACATGCTGTACAAAGAGGTACCCAGGGTAATGGTCAATGTTATCGAGGTTCTGGAAATGAATCCGTTGAGGAGTGTCAGGAAGAACGATCTGGTCTGCAACCTCATACAGAGGAATGCTTGCCCCTGCTTTTTGAACCCTGAAGAGAATTCTCCTGAGCTTGCGGAGGTTAGGCAGATCAACCAGGAGTACCAGATCGAGACTGAGAGACTGGTCTCTGGGGTGCGCTATGATGGGCGAGAGGACTTCACTGTAGTTGTTCAACCCTACTTACGAAACGTATTTGTCCCTCTCATTGGGATTGGGAAGCCTGACCTGAGTTTCTTCTCAGTGGACTGTTTCCACATCAGTGAGCGAGCACACGCTGAGATGGCCATTGCTCTCTGGAACAACATGTTGGAGCCGGTAGGCATGAAGCAGGGCTACAACAACTTCACATACAACCGCACCAAGATCAACTGCCCCTCTGAGGATCAACCCTTCATCTTCACTAAGGTCAATAGCCTCCCGAGTCCACCTGTTACCACTACCACCCCTGTCCCAGTCACTAACACCACCACCCCCAGCCCTGTGCCCCGGTGTGACTCCTCCATACCTGTGTGGGTGCCCGTGTTGCTGGGCGTCACTGGCTTACTGATCGGCTGGGGAATCACATGGCTACTCATGTCCTGCAGAGAACGGCGGAATAAGAGGAaaatgggagagaaagaggttgAGATGAAAGGAACTGGTTTCTAATGATATTCAGCAACAGATAACAAATACTTTTTTATAGTTTGAATGTGGAAATACAGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU793551 lncRNA upstream 196 32224689 ~ 32225047 (+) True G697242
TU793530 lncRNA upstream 7678 32214449 ~ 32217565 (+) True G697221
TU793524 lncRNA upstream 56447 32168580 ~ 32168796 (+) True G697217
TU793522 lncRNA upstream 57572 32167455 ~ 32167671 (+) True G697215
TU793521 lncRNA upstream 57905 32167111 ~ 32167338 (+) True G697214
TU793572 lncRNA downstream 28444 32284282 ~ 32284505 (+) True G697260
TU793584 lncRNA downstream 48058 32303896 ~ 32304102 (+) True G697270
TU793594 lncRNA downstream 65602 32321440 ~ 32322745 (+) True G697280
TU793595 lncRNA downstream 66928 32322766 ~ 32323116 (+) True G697281
TU793596 lncRNA downstream 67507 32323345 ~ 32323708 (+) True G697282
XM_021612340.2 mRNA upstream 11156 32194207 ~ 32214087 (+) False LOC110529803
XM_021612341.2 mRNA upstream 11156 32194224 ~ 32214087 (+) True LOC110529803
XM_021612338.2 mRNA upstream 31539 32172212 ~ 32193704 (+) True LOC110529801
XM_021612334.2 mRNA upstream 59175 32163321 ~ 32166068 (+) False LOC110529799
XM_021612339.2 mRNA downstream 480 32256318 ~ 32268368 (+) True LOC110529802
XM_021612357.2 mRNA downstream 31326 32287164 ~ 32289011 (+) False grcc10
XM_021612358.2 mRNA downstream 31326 32287164 ~ 32289011 (+) True grcc10
XM_036986867.1 mRNA downstream 239591 32495429 ~ 32503490 (+) True LOC110529813
XM_036985298.1 mRNA downstream 247300 32503138 ~ 32516734 (+) True LOC110529231
TU790056 other upstream 2432496 29790997 ~ 29792747 (+) True G694036
TU789468 other upstream 3286970 28930760 ~ 28938273 (+) False cdca4
TU789469 other upstream 3286970 28935489 ~ 28938273 (+) True cdca4
TU789102 other upstream 3519491 28704850 ~ 28705752 (+) True G693207
TU789022 other upstream 3666870 28495285 ~ 28558373 (+) True btbd7
TU796067 other downstream 1871755 34127593 ~ 34128301 (+) True G699605
TU797136 other downstream 3199010 35454848 ~ 35462040 (+) True LOC110529856
TU797266 other downstream 3357326 35613164 ~ 35614666 (+) True G700685
TU797474 other downstream 3648211 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 4444600 36700438 ~ 36700739 (+) True G702415

Expression Profile