RNA id: XM_021612356.2



Basic Information


Item Value
RNA id XM_021612356.2
length 895
RNA type mRNA
GC content 0.46
exon number 2
gene id LOC110529808
representative True

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 32286058 ~ 32287169 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCCTGGCTGAACAGGAAAGGAAACAAACTAAAGTGAAAGAGATTTACAATATTTCATTCTTCCTGTAACAGTGAAACATTGAATTCGAGCATTACCATGAAAACACATGTTAGACAATATTTCCGCGGTTGAGAAGACGGGATTTCAAAGGAAAAATCATGTTAGGACTGCTCAAAATCTAGCTAGCCAAGGCAGTAACCAGTAACTTTCTTTCCTATCTGTCGTGCACATGTTGCGGCGCAGTCTTTCATTGCCGCATGACTCAAGAGTGGATTACAATATGGAGCAAAAGCTTTCAGAGTTCAGAGCTCGAAGAAGGGCTGATGTGGCTCCTAAGAAGAGCGAAAAGCAGCCCATAACATCATCTGACAGTGGCAGCACTTTGATCTCGGCCAGCTGCCAGTCATCAACAGCTGATGCAGACACACAGGAGTTTACAGAAGATCCAATCTCTGCTGTCGCTCAGGCTACAAGGACTAAACATTGGGGGGATGGCTGGTTGCTGGAGAGCAATCTGGGTCAATGGCTTGGTTCGAAACGACTGGCTTTCACAAATCTGATTTTGCTGAAGGTGTTGCTTTGGCTGGTTCTACTTGGGCTGTTTGCCGAACTGGAATTTGGGTTGCCTTTCttccttatctctctcttctaCTGGCTGTACGAGGGGCTGCGGAGCCCAACTGCACGTCAACCAGGAGAACTGAGCGCTTATTCAGTGTTCAACCCAGACTGTCAGCCTCTCCTGGGGGCACTTACTGCAGAGcagctagagggagagatgggctACAGACCACTGGCCAACAGATGAGACCCTCAAACAACTGactttattctgacatttaatagCTACTGTACTTTAAGATTTCCACTGTAATAAAAATGAactgtaaatgta

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU793982 lncRNA downstream 929 32284890 ~ 32285129 (-) True G697642
TU793972 lncRNA downstream 17455 32255521 ~ 32268603 (-) True G697632
TU793944 lncRNA downstream 61245 32224607 ~ 32224813 (-) True G697604
TU793897 lncRNA downstream 126010 32159223 ~ 32160048 (-) True G697561
TU793896 lncRNA downstream 127403 32158354 ~ 32158655 (-) True G697560
TU793983 lncRNA upstream 15701 32302870 ~ 32303081 (-) True G697643
TU793984 lncRNA upstream 15988 32303157 ~ 32305119 (-) True G697644
TU793989 lncRNA upstream 37642 32324811 ~ 32325062 (-) True G697649
TU793991 lncRNA upstream 41649 32328818 ~ 32330202 (-) True G697651
TU794012 lncRNA upstream 77316 32364485 ~ 32364689 (-) True G697671
NM_001160613.2 mRNA downstream 7824 32269095 ~ 32278234 (-) True bpnt1
XM_021612342.2 mRNA downstream 68486 32214451 ~ 32217572 (-) False LOC110529804
XM_021612343.2 mRNA downstream 68488 32214451 ~ 32217570 (-) False LOC110529804
XM_021612332.2 mRNA downstream 150864 32132683 ~ 32135194 (-) True LOC110529796
XM_021612327.2 mRNA downstream 582533 31657632 ~ 31703525 (-) False LOC110529793
XM_036985295.1 mRNA upstream 1895 32289064 ~ 32300567 (-) False LOC110529806
XM_021612352.2 mRNA upstream 1895 32289064 ~ 32300571 (-) False LOC110529806
XM_021612345.2 mRNA upstream 1895 32289064 ~ 32300579 (-) False LOC110529806
XM_036985294.1 mRNA upstream 1895 32289064 ~ 32300581 (-) False LOC110529806
XM_021612349.2 mRNA upstream 1895 32289064 ~ 32301293 (-) False LOC110529806
TU793919 other downstream 68509 32214486 ~ 32217549 (-) False LOC110529804
TU793920 other downstream 68509 32214486 ~ 32217549 (-) True LOC110529804
TU792983 other downstream 606323 31657726 ~ 31679735 (-) True LOC110529793
TU792778 other downstream 808031 31477354 ~ 31478027 (-) True G696499
TU792310 other downstream 1430651 30855107 ~ 30855407 (-) True G696073
TU794118 other upstream 211630 32498799 ~ 32499410 (-) True G697774
TU794745 other upstream 702076 32989245 ~ 32990061 (-) True G698356
TU795919 other upstream 1655853 33943022 ~ 33952356 (-) True G699468
TU795985 other upstream 1736122 34023291 ~ 34023885 (-) True ankef1a
TU798118 other upstream 3295829 35582998 ~ 35589877 (-) True G701454

Expression Profile