RNA id: XM_036985293.1


Basic Information

Item Value
RNA id XM_036985293.1
length 4039
RNA type mRNA
GC content 0.49
exon number 13
gene id LOC110529806
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 32289064 ~ 32301293 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTCTATCAGTGTTCTGACTGATGTGTAGATACTCTCCGTGAAGCCAGCCTAATTTTCTCCTgtaaaatgcaagattaactttaaattgaacataaggacatgtagctggctacattatTTCTATGATTAACATGATGGCCATGCATCGTTTTTGCAAAAAAAtaccttgctttttcattgtaaactcatttacttgtgtggctgtcagccaaatagcgttgcacttctgttgtcatctgatgaaaatgaagctattttctgccgaatgtgtttcactaatgtattttctgtgaaggaaaactatagttgcacgTCCCTGATActttattgaagaaaaaaaacaacactgtTGGTTTATAATTTAAAACGCAACCGCTGTCAATACACATCGGGATTTACCTGCTCCCGCTTTCTCTCTTTGTGCTATTTATAAACACACActtgactggctcaactgttctggggaaataagTTTGCCGCATTAGAATCGAGTTCCTAGCAAGACCCAACCAACATTATCTTGGACCGCTCTGTCGTGTATCCGGCTCTCCCCTGCACTCGCGTTTCAACAACAGCAGAAAACAGCCTCAAGCCTGTCTCTGATTATTGAAGCAACAGAAATAGAGGTAAACGGAGAAAAATGCGGTGaggcagaaaaagagagacaacTGGAGTATTTTATCGGGCGGTACGTGGGGATATCAAGGTGTATTACTCCCTGTCCACTCTGCGGCGGATCCAAGAGAGAGCACCGGAGGGGAGAGCGAGGGGCGCTGGGATACATAGTCACGTTGCTTCCACTCTGCACCTGCTGCATCATGGGTAACGTCGCTGGCAAGGACGACCATGGCCCTACAGGTTCCCTACatgaacggTCTCATTTAGATCTGTtccacactcctccctcctccccctctgatTCTGACCTGGCTGCAGCTCTGGCCTTGGCTCCAGCCGCGGCTCAGCTGCTGCAGCAGGGGACACCGTCCTCTGGGGCTACTGGAGGTATCGTCTGCCAGGGTGGAGCTTCCCCCTCCACCAACTCCAATTGGAGCCACACGCTGTCCGTCCCGCCAGAATGGGCTGTGATTAGCCTAGAGAGTGGTGCATCGACGCAGGGAACAGGGGTGGAAATGGACGGTGAAAGGCGACCGGGGAGGTGCTCCAGcagccacaacaaccacagcagcagCCCTGTGTCCCCAGCCCAAGAGTCTCCGTCGGATCGTAGCCCTTTGGAGCAGAGCTGGCAGGACCGGGACAGTGGGCTGGAGCCCCAGGCAGGGCCGGAGAGGGCTAGGGAGGAGATGGCCCTGGCTCTGCTGAACCTGCTGGAACATCACAGGTCCACACTGGGGCTCAGTCCCGGCCTGGACGCGCCAGCAGGAGCAGCCGagctgctGAGGCGGTtgatggtggagagagaggtgctgGTCGAGGAGATGCGCAGCCTGAAGGACACACTGAGGACTGAGCGAGCTGAGTGGCACCAGTTCCAGTGCGATCTGCAGGTGGCGGTGTCTGTGGCCGACCGGCTGCGCATGGAGGCGGAGGAGACTCTGGGTACGCTCAGAGAGAGCCACGGGGAACTGGAGGGCCAGCTGGCCCAGGCCCACTGCAGACagcaggacacagacagggaACTGGAGAGCCTGAGTGCTGAACACGGAGAGGCCTGTCACAGACTGTCTAATCTCACCCTGGAACACCAACGTACCATGGCTGAGCTGGAGACACTGAGacgcatgcagacagagagagggaaggactcacacagtcacagagagatggagggaagagacaCAGAAGAGAGGCCGGCTGGTGAAGACACTGGTGAAGACATAAATGCGGTGGAGGCTCTGgatggggaggaaagagaggattCTGAAAGGGAAGTGGAAGGAGAGAAAATAATAAATAGTGAGGGAGTGGATGTTAAGATGGGAGGGCAGTCTCCTGAGGAGCTTGTTAGTGGAGGGGAGAACCTGCTCAAAGGGAAGGGGGTGGCGGAGACGTACCTACGGAATTTGGTTGCAGCTGGAGAGAAGGGGTGCGGCTTAAGAGATCCACGGAGGATCGTAATGATGTCAGAGCGTTCCAGGAGCCTCTCTCGACTTCCCCTGCCCACGGACTCTCTCCCTGCACAGAAGGGTAGCTCCCAGACCACCACTAGTACAACACTGCCTCTATGCAAGAAAGAAGAGCCAGTCAAAGGGAGAAGGATGGACCGCATACTGCAAACACAGGACACCTGGTCCAGCTTCTATACAACAGAAAAACAGGAGGAGGACCAGAACGCAGACCCACTGTCCTCGTTCAGACCTCAGGATGGTTTCAGCATGCTGCTGCGACGTCATGGAGGCTCCAGGCGGAACTCACTCCTGCGCTGGTGTCAAAGCCGCACCCAGGGCTACAAGaataTTGAGATCACCAACTTCAGCAGCAGCTGGGAGGACGGTCTGGCTTTTTGTGCTGTGTACCACACCTATCTACCCACACACATACCATACAGCAGTCTCAGCCCAGGAGACAAGAGTGAGAACCTGGGCCTTGCCTTCCAGACTGGGGGAAGTGTAGGAATCACATCCACACTGACTGTGGAAGAGATGCTGAGACCAGGTGGGCCCGACTGGCAGAGGGTCCTGGGGTACGTTGAAAGCATGTTTCGTCACTTTGAGATGTGAGGTCATTTTCCTTCTGGCTTCCCTCCCAAACTCGACATCTAACTGGTCCGCCACCACCAGTCTGGTTCCTTTTCTTGCATCATGAACTGAACTGAGACAGCTGATTGGCTGAATTGACTGACGCACCACTAGGGATTGTAGGACAACTGTTGGAAATTATTTCTACTTCAGCTTCACTCTCCGTGTGGACTCCTGCTGTCGGCCATTGGTTGTAGGTGCACTGTGGATGGAAGTGAGGGTTTTAGGCTGAGAGCTGTTCTTTTGTTAAATTTCACGGTGATTGCACTGAATATGAGAACACAAGCAGCACCATAAATGAGGAAATTGTGGATGTGACTATCTGAGGAGTACAGTATATTCTAGACAAATTGCACCAGGAAAATGTATCAGACTTCAAGTTTATCACTTTGGGTGCAACTGTTGTTCTTTGTTGCACTTATTCTAATGCCTTTTTATTTAAGCACTTTATCAACAATAGGAAATCAGTTTTTAACTGGAAGATTTTTATTTTGTGGACACACTCTGCCATGTTTCACATTCTTTATCAGACTTTATTTGCTTAGAAATGTTGGGATATTTATGTAGCCATAAGTAGTATTCTAATGTCTATGAACCTCAACTCAAAGCACAAAGAGGAGCCAGATGACTTGAATGAGTTAATTTAGTGGCGCTGCATCACAACCGGGATCAACCAAGAGTGACTGCCTTTTGAGGAAATGTATATACAGAACtgtctaattaagcaataaggcccgagggggtgtggtatggccaatataccatggctaagggctgttcttaggcacaacgcaacacggagtgctaggacacagcccttagccgtggtatattggccatatatcacaaacccctgaggggccttatagctattataaactggttacaaatgtaattagagcagtaaaaataaatgttttgtcatacccgtggtatactgtctgatataccatggctttcagccaaatcagcattcagggttcgaaccacccagtttataattagtTATATTTTGAATCTACTATTGGTTTGAAAATATTTTTAAGTCAATGTTTTAAATGTAGAATGAAAACAAGTGCCATAGGTTGGACTAATGAACAGAGGGGTATTTCTCCTGTTATGGGAATGGATTGTCTGTTGCTTCTATAAATCAGACAAAACCTCAATGTGGCCATATAAGGACTGAATCCTAcaatgtttgtctttgtgtgaaggagagatgtacagtatgtgcaaagTATAAATTGAGGCATGTGCCACTCCCCGAAGAGTTTTACTGTGAATGATAACAGTTGCCAAAGTCTTACTGCAATAATAAAGTTTGTGTTAATCTGC

Function

GO: NA

KEGG:

id description
K23028 SPECC1; cytospin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU793982 lncRNA downstream 3935 32284890 ~ 32285129 (-) True G697642
TU793972 lncRNA downstream 20461 32255521 ~ 32268603 (-) True G697632
TU793944 lncRNA downstream 64251 32224607 ~ 32224813 (-) True G697604
TU793897 lncRNA downstream 129016 32159223 ~ 32160048 (-) True G697561
TU793896 lncRNA downstream 130409 32158354 ~ 32158655 (-) True G697560
TU793983 lncRNA upstream 1577 32302870 ~ 32303081 (-) True G697643
TU793984 lncRNA upstream 1864 32303157 ~ 32305119 (-) True G697644
TU793989 lncRNA upstream 23518 32324811 ~ 32325062 (-) True G697649
TU793991 lncRNA upstream 27525 32328818 ~ 32330202 (-) True G697651
TU794012 lncRNA upstream 63192 32364485 ~ 32364689 (-) True G697671
XM_021612356.2 mRNA downstream 1895 32286058 ~ 32287169 (-) True LOC110529808
NM_001160613.2 mRNA downstream 10830 32269095 ~ 32278234 (-) True bpnt1
XM_021612342.2 mRNA downstream 71492 32214451 ~ 32217572 (-) False LOC110529804
XM_021612343.2 mRNA downstream 71494 32214451 ~ 32217570 (-) False LOC110529804
XM_021612332.2 mRNA downstream 153870 32132683 ~ 32135194 (-) True LOC110529796
XR_005052856.1 mRNA upstream 4849 32306142 ~ 32322140 (-) False LOC110529812
XR_005052857.1 mRNA upstream 4849 32306142 ~ 32322140 (-) False LOC110529812
XM_036985297.1 mRNA upstream 17147 32318440 ~ 32322140 (-) True LOC110529812
XR_005053020.1 mRNA upstream 116179 32417472 ~ 32421085 (-) True LOC118965610
XM_021614360.2 mRNA upstream 261838 32563131 ~ 32569877 (-) True LOC110531086
TU793919 other downstream 71515 32214486 ~ 32217549 (-) False LOC110529804
TU793920 other downstream 71515 32214486 ~ 32217549 (-) True LOC110529804
TU792983 other downstream 609329 31657726 ~ 31679735 (-) True LOC110529793
TU792778 other downstream 811037 31477354 ~ 31478027 (-) True G696499
TU792310 other downstream 1433657 30855107 ~ 30855407 (-) True G696073
TU794118 other upstream 197506 32498799 ~ 32499410 (-) True G697774
TU794745 other upstream 687952 32989245 ~ 32990061 (-) True G698356
TU795919 other upstream 1641729 33943022 ~ 33952356 (-) True G699468
TU795985 other upstream 1721998 34023291 ~ 34023885 (-) True ankef1a
TU798118 other upstream 3281705 35582998 ~ 35589877 (-) True G701454

Expression Profile