RNA id: XM_036985315.1


Basic Information

Item Value
RNA id XM_036985315.1
length 1978
RNA type mRNA
GC content 0.50
exon number 20
gene id cep43
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 32570016 ~ 32589888 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tattacTTCGATTTTCATATAGAACTTGAATTATTTGAGCCTAATCCACCAATTGATACAGCACCAACCTATGTTGACATCACTCCCTCCGTGTTGAACTAAAGAGGGGCAAGATTGCGTGTGCCACGATGCTGGCGAATGGTGCAAATCGTGCGCGCTGGCTTACTGTTGATTTTTTTTCCTGGAATCTGCGTTGCAGAAATAGCAAATAGCTAGCTGCcagtgtttgttttggttgtccTGGTTGCCGATTAGCTAAAAGAAAGATGTCTGCCACGGAGGACGACACTGAGTTGCGGGATCTTTTGATCCAAAACCTAGAAAACAGTGGGGTCTTGAACAAACTAAAGGCAGAAATGCGCGCCGCTGTCTTTCTGGCTATGGATGAACAGGATAAAGTGGAGAATAAAACTCCACTTGTCAATGAAAACCTGAAGAAATGTCTTGATACAAAGGATGGACGCCTGGTGGCCAGCCTCATCATAGACTTTCTACAGGTCTTTCACCTGGACTTCACGCTTGCTGTATTCCAGCCAGAGATAAACTCACTAAATGGCCTAGACAGCCGTGAGCAGGTCTCTTGTGAGCTGGATATCACCGAGACTGATATGAACAGGAACACTCCTCTCCTGCTGGAGCTCGTCAAGAGGGGCAGACACAAGGAGAAGGCCTCCATCTTCTCCGAGGAACTATCCCCCAGGCAAATAGCAGGCGCCCGGAAGAAGTTTGATGTTTATGACAAGGCCAGAACTGGTGGGATACTCAAAGAGGATTTGAAAGTTGTGTTTGGAGATGTTTTTCCCAACTTCAACAAGAACATGCTGGAGAAGTTTGTCACTGATGAACATAGAGTTGGAGACAAGGCCTCTGGTAAATCTATAGACTTCCAGGAGTTTCTGGGCTTGTACAAGCGCTTCTTCAGTCAGTGTCGAAGTGTGGTCACCCATGACACCTGTGATGTGATTCACAATCCCAGTCAATTTATTGAGGAGAAGAAAAGCACTTCACCGCCTAGTAAGGACGAAGAGATCCCCAGGTTTAAAGGACATAGGCACAGTGCACAGGCGGAGAAGGCTGACACCAAGGGCGTGGAGGTCAGTCACAGCCACAGTGACACCAGCCTGCGCTTTGGCTCTCTAAAGGGCAAAGGGCCGGGTCACGTGACGCCAAGGCACAGCGAGGTGTCCGGGGACAACGACAACGGCCCCACGGCGAGCCTGAAGAAGGGGCTGGACCTGGAGGTGGAAGAGGACCTAGACGAGGACGACTCGTTCTTTGACGACCCTCTGCCTAAACCACAGAAAACCTACGGCTGTAGTAGCCTTCCCCTGGCTAAGAGTAATTCAGGGGCCAGTCTCTCTGAAAAGAGAAACGGTCAGAAAGACAGCTTCGTCCGCTCTCTGAGGGAGGAGGGCCTCTCAGGGCGCTCCTTTAACCCAATGAGGAGGGGCACTAGCCTCAATGACCTGTCTGCTCTGGGTAGTGACACAGAGGGCGATGGGGACGAGCTCTTTTCTGACTATGATAATAAACGGAGCTGCTTGGAGCACAGGAGAGCAGCAGATTCGGACCCGCCCCCCAAGAGGAGTGCTGCAGGTGGGGGGTTCCACTCAGGAGAAGCCCATCACAGAGACCTCTCAGGCAGCAAGAACGATGACGACTACGGCGATGACTTTAACAGCAGCCATCGATCAGATATCTCCAAGAGTGAGGTGAGCATCGGAGAAGAGATCGAGGAGGTTTCCATCGAGGGACCCGACAACAGCGATAAGTTTGATGAGATCACTCAGGACCTGAGCGTATCTCAGCTCAGCCAGAGTCAAGGAGCTGACTACATGGAGGAGGTGGCATGACAATCCCATCAGCCTTACACCACAAAGGCCATTTCTACTACGTTAGCTATTATTTATGTTATGTGTGCACATAATTTGTGTACATTTTGTGTTCATGGATCTAATAAAATTACCACTGTCACCAA

Function

GO: NA

KEGG:

id description
K16546 FGFR10P; FGFR1 oncogene partner

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU794156 lncRNA downstream 38177 32531613 ~ 32531839 (-) True G697807
TU794152 lncRNA downstream 40026 32529632 ~ 32529990 (-) True G697803
TU794129 lncRNA downstream 51242 32514133 ~ 32518774 (-) True G697781
TU794127 lncRNA downstream 51288 32514133 ~ 32518728 (-) False G697781
TU794126 lncRNA downstream 51367 32514133 ~ 32518649 (-) False G697781
TU794369 lncRNA upstream 75060 32664948 ~ 32665251 (-) True G697992
TU794370 lncRNA upstream 75731 32665619 ~ 32665846 (-) True G697993
TU794326 lncRNA upstream 94899 32684787 ~ 32687854 (-) True G697956
TU794379 lncRNA upstream 102074 32691962 ~ 32692607 (-) True G698000
TU794458 lncRNA upstream 199121 32789009 ~ 32789408 (-) True G698076
XM_021614360.2 mRNA downstream 139 32563131 ~ 32569877 (-) True LOC110531086
XR_005053020.1 mRNA downstream 148931 32417472 ~ 32421085 (-) True LOC118965610
XR_005052856.1 mRNA downstream 247876 32306142 ~ 32322140 (-) False LOC110529812
XM_036985299.1 mRNA upstream 410 32590298 ~ 32638250 (-) False myt1la
XM_036985301.1 mRNA upstream 410 32590298 ~ 32638250 (-) False myt1la
XM_036985303.1 mRNA upstream 410 32590298 ~ 32638250 (-) False myt1la
XM_036985304.1 mRNA upstream 410 32590298 ~ 32638250 (-) False myt1la
XM_036985306.1 mRNA upstream 410 32590298 ~ 32638250 (-) False myt1la
TU794118 other downstream 70606 32498799 ~ 32499410 (-) True G697774
TU793919 other downstream 352467 32214486 ~ 32217549 (-) False LOC110529804
TU793920 other downstream 352467 32214486 ~ 32217549 (-) True LOC110529804
TU792983 other downstream 890281 31657726 ~ 31679735 (-) True LOC110529793
TU792778 other downstream 1091989 31477354 ~ 31478027 (-) True G696499
TU794745 other upstream 399357 32989245 ~ 32990061 (-) True G698356
TU795919 other upstream 1353134 33943022 ~ 33952356 (-) True G699468
TU795985 other upstream 1433403 34023291 ~ 34023885 (-) True ankef1a
TU798118 other upstream 2993110 35582998 ~ 35589877 (-) True G701454
TU798044 other upstream 3051467 35641355 ~ 35687636 (-) False LOC110529865

Expression Profile