RNA id: XM_036985308.1


Basic Information

Item Value
RNA id XM_036985308.1
length 7174
RNA type mRNA
GC content 0.48
exon number 22
gene id myt1la
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 32590298 ~ 32638849 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccctcccttgttTTTCTCTAAAGTGGCTGCAGAGCTCCCCTTTCAttcacttctctccctccatttctcaaGTGCTACAGGAATGAGCAAGAACACCCCGACTCTGATGACAGTGACaaagaaagagtgaaagaaaGGAAGGAGGGAATGTacaggagagggaggtgagagaaagagagagaagaaaggaagggagagagagaaattgccAGTGTCGAAAACgaagtgtgtgagagaaagagagagcgagagggagactgGTTGCAGACTGACTTTCAGACAACTGTGGGAGAGGAAGCAAAAAGAGAGCTTTACCGTCGCCATTTCAATCATGACTCTGGAGGGGGAGTTTTGAAGTGCCCGCTGCTGAGGAAGCCCAACCAGTTGCACTCTGAGGAGGCGGAGGCGTGCTTTTGAACCAAGGTGTTGCCCCACCCAACCCAGCTGATACCAGCAGATGGAGGTGGACGCGGTTGAGAAGCACCACCGGACGCGTTCCAAAGGGGTCCGAGttccggTGGAGACGGCAGCACAGGAGTTATTCAGCTGCCCTACTCCAGGATGTGATGGAAGTGGACATGTCAGTGGCAAATACGCCAGACACCGCAGTGTCTATGGCTGCCCCCTGGCCAAGAAGAGGAAGACCCAGGAGAAACAGCCTCTGGAGCCTTCCCCCAAGAGGAGGCCCTACTTAACCCCTACCGACCCAGAGGTGAACCCTGCTGCCATCTTCCACTCCTATGAGCCTGAACCcatggatgagggagaggagaaggagcagGGGGAGGTAGACGGGGAGAttcaggaggaaggagaagaggaggaaggggaggagggggaagaggtagAAGAGATAGAGGAGGAAGGATTTTCTGAGGATAACGGGGAGCtaggtgaggaagaggaggaaggagaagaggcagatgaggaggaggaggaggtggagatggaggtaGTAGGGCCAGTGGAGGTGGAACAGgtggaggaagggatagaggaagatgaggaagcagatgatggggatgatgaagagcaagaggaaggggaggaggaagaggaacaggaggaTGAGGGTGACGAAGATGAAcatgaggaggaagaagaggaggaggaggaagaagaggtccAGAGTCACCATGAGCCAGAGAACCGGCACAAAAATGGCGGACAATCAAAGCATCACCCTACGGGACAGAAGGATAACATCAACAACAGTGCCCCTGGCCCTAACGTCGGCCCTAATGGTGAAGAGTATGAAAACTATGATGAGCTGGTGGCCAAGTCCCTTCTCAACCTGGGGAAGATCGCAGAGGACGCCGCCTACCAGGCCATGACCGAGTCAGAGATGAACAGCAACTCCTCCAACAGTGCCGGTgaggacgatgatgatgatgatgatgatgatgatgaagagggcAACGAGCGCGGCGGGGGCAGGAAGGGCAAGCTGAGCGTGGATCTGGACAGCGACGTGGTCAGGGAGACGGTGGATTCGCTCAAGCTGTTGGCGCAGGGCCACGGCGCTGTGCTCCCCGACGATGGCTACCCAGAAGGCACCGGTTTGGAGGATGGCAGGCATCCCAATGGGCGACCCCACCACCATGGCGTCAGGGGTCAGGCtgaggagagcgaggaggaggTGTGCCTCAGCAGTCTGGAGTGTCTGAGGAACCAGTGCTTCGACCTGGCCCGCAAGCTGAGCGAGACGTCGCCTTCCGACCGCCTTGGACACCCCGGCCTGCAACACCACCAGGCCCATCAGAACCACCACCCTAACCAGTCCCACCACCACCTGCAGCATCAAAccggccaccaccaccaccaggctcaGCACCAGCCTCCGGTTCAGGCCCACCACCTGCCCAGGTACGAGAGCTGCCAGGAGGGCCAGCAGCCAGACGAGCGTGGGTCCCTGGAGCGCAGCTACTCGGACATGGTCAACCTGATGAAGCTGGAAGAACAGCTGAGCCCGGCCTCCAGGGGGGGCTACTCGGCCAGCTGCCACCAGGACGGGGACGAGGACACCACGTCGGTGGCCTCGGACCGCTCGGACGAGGCCTTCGACATGACCAAAGGCAACCTGTCCCTGCTGGAGAAGGCCATCGCCATGGAGTCAGAGCGAGCCAAGGTCATGAGGGATCGCATGGCCTCGGAGGGACATCATATGGTGGCCCGAAGGGacaatcatcatcaccaccaccacggcGAGCACAGCCCCAGACAGAGCAGCGGGGCGGAGGAGCGCAAGTCCAGAATGCACCACGATGGGTCAAAGAGAGCATACTACCCTAAAGATTCTGCAAGGGGGGACAAGAAGGAGAGTAAGTGTCCGACCCCGGGCTGCGATGGGACAGGCCACGTCACGGGTCTCTACCCCCACCACAGGAGCCTGTCTGGCTGCCCCCACAAGGACAGGGTGCCACCAGAGATTCTTGCAATGTATGAAAATGTTCTAAAGTGCCCTACTCCTGGCTGCTCGGGGCGTGGCCATGTCAATAGCAACAGGAACTCCCACCGCAGTCTCTCGGGGTGCCCCATCGCTGCTGCAGAGAAGATGGTTAAAGTCCAGGAGAAGCACATCCCATGTGACGGGGGCCCCAAGTCCAACCAGGCTTCAGACCGTGTGCTGAGGCCAATGTGCTTTGTGAAACAGCTGGAGATCCCACAGTACGGTTACAAAAATAACGTCTCCACCAGCACGCCGCGCtccaatctggccaaggagctgGAGAAGTACTCCAAGACCAGCTTCGACTACGGCCAAGGCTACGACAGCCAGCAACACATCTACGGTGGGGGGAAGAGAGGCCTGGTCCCCAAGCCCCAAGGACGGGACTTCTCGTCTAAGGGATATGACGCCAAGCGCTACTGTAAGAGCCCAGCCAGCAGCACAACGAGCAGCTACGCTCCCAGCAGCAGCAGTCTGAGCTGCGGAGGGGGAGGGGGCGGCAGCAGCGCCAGCAGCACCTGCAGCAAAAGCAGCTTCGACTACACACACGACATGGAGGCTGCCCACATGGCCGCCACGGCCATCCTCAACCTGTCCACGCGCTGCAGGGAGATGCCCCACGGCCTGGGAGGCAAGCCCCAGGACCTCCTCTCCCAGagTCCTGATGGGGACGTAGATGACAACAGTACCCTGGACCTGAGTGTGAGCCGTGGGCAGCCTGGGGGTCCTGAGGGGAGTGGCACGGTGCTGACGCCCCTGCAGCCCATGTCCCCCCAGCGGCAGGCCCTGCTCAACAGCAGCCGCTGCTACCAGATGAGTGAGGCCGACTGCTGGGACCTGCCCGTGGACTACACCAAGATCAAGCGCATCACTGACGACGATCACAAAGAGGTCGATGACCTGGACCCGTTCCAGGACCTTCTGGATGAGCAGCACTATGGAGGGGACGTGACCATGCCCAGCCCCAAACACAAGTACTCCGCCTGCAAGGAGGGCAAGAAGGAACTCATCACtCTCTCAAACTGCCAGTTAGCTGACAAAAGCATCCGCAGTATGATGACAACCAATGCCCAAGACCTCAAGTGTCCCACTCCGGCATGTGACGGGTCTGGACACATCACTGGGAACTACGCCTCGCACAGGAGTCTGTCAGGCTGTCCACGGGCGAAGAAGAGCGGGATCAAGATACTGCACAGCAAGGAGGACAAGGACGACCAGGAGCCAATTAGGTGTCCAGTCCCAGGCTGTGACGGACAGGGTCACGTGACGGGGAAATACGCATCTCACCGCAGTGCGTCGGGCTGCCCCCTGGCGGCCAAGCGGCAGAAGGATGGCTACGTCAACGGCTCCCAGTTTGCATGGAAGTCCGGGAAGACAGATGGCATGTCGTGCCCGACCCCGGGCTGCGATGGATCAGGACATGTCAGCGGGAGCTTCCTGACCCATCGGAGTCTTTCTGGTTGCCCCCGTGCCACCTCAGCCATGAAGAAAGCCAGAATGACTGGGGTAGAAATGTTAACGATCAAGCAACGGGCAAGCAAAGGAATAGAAAATGATGAGGACATTAAACAGCTGGATACAGAAATCAAAGATCTAAACGAATCAAACAATCAAGTGGAATCAGACATGATTAAACTTAGGACACAAATCACCACTATGGAGACTAACCTGAAGTCCATAGAGGAGGAGAACAAAGTTATTGAGCAGCAGAATGATTCCCTACTGCACGAACTAGCCAACCTCAGCCAGTCTCTCATCAACAGCTTAGCGAATATCCAGCTCCCACATATGGAGCCAATGAATGAACAAAACTTTGATAGTTATGTGAATACTTTGACAGATATGTACACCCATCAGGACCAATACCAGAGTCCAGAGAACAAGGCCCTATTGGAGAACATCAAACAAGCGGTGCAAGGCATCCAAGTGTAGTAGCCTATCTACCCGCGAAAAAGGCACTGTCAGAGGCTAAATCAAATGATGTTAAAGCGACGAAAAAGGGTCAAAAGAGAGAATGGATCAGGATTTTTTTTTGCTGCTGTAAATTACCATCATGTTTCTTTTATTACAATGTTATGCTCTGAGCTCCATGGTTATGATATTTTTGCCTTGCTTTAAAAATAGTTCCCGATGGCAAAAGTTTAAAAGAACATACACGTTTTGTACATTTTCATATGACCTAATATAACGCGATGTACTGTTTATAGCTGCTAATGTATGCACATTTTtgtgtatatgtatttattaATTGTAAGCTTGTTTCATTCATTATTTGAACGCTTATTGAGAAAAAGGACTAAACTGAGTCCCATGGGTCGGGAGCCAGATGAGGGCAATGTGAGGAGCAATCATTTTTAGATAAGCGTTTCTTTTTGTGATTTAAtagaatacaacaacaaaaaaagacctTTGGTGTGAAGATTGTTTAATGGATGTAAATGTATCGATTTTTGTAACAATGTTTGAAAAAACTCTTTGTCTTCAGTGGTCTGTGTGGAGACTAATAATAATGTCTATGTTTAAATAAAGTACGAGAAGAAACTATGTATAAATATGACAAATTTCAAACATCATGAGACGGAAACTAAGTGGTGCAACTCCCATCATCTGGAATGGACTGTACTTCATTAAgttagaaataaataaaaaagtcttAGTAATATGTGCTGTTAAACTATTTCCATTTCAAACACAGAGCGGGAGGACCAATGGCTATGGGAAATGTAGGAGACAATCTAGCGTTACTCATTTATTTTAATCGTAAATCTTATCGAATAGCTAGTAGGTACAACTTATCAGCAATATTGGTATAACAATGATTAAATCACTTGTTTAGATATGGGATGCAATCTATATAGAACAAACGTTTGGGTATATGCAATTTCTTATAAATAAAATTAGCTGAGCTGATAAATCTTTTTactaaatgtaaatgtattaaGTTTTGTATAAATCTTTTAATACAATCATGTTTTCGGGATTCATCATGCGGCGATCAGTTCCAAAATGAAAGATGGATGAGTTTATGAGTTTCGTTCTCTCATGTTCGATTTTGCACAGGAACACCTTGGTTTTGATGTTTTTATTGACACTTAAAGAGGTACTTGAAGGGTCAAATTGATGGTTCAGAAGTTTTCTAGAAAAGTTATCTTTATAAAGGCTGATTGATGCGCTGGACTTACAGGGTCAATGTCCCCCATTTATCATAGTATATTATTGCACTGTCTTTGCGATCATGCATAGTATGTGTCTGAGCCACACAACATGACACGAGCTAAAGATTGCTTTTTGATTCTGTCCTAAAAAAATGAATCTATTGGTAAAAACTTTATTGATATCTATTATAACAGCAAAGAATAACGGAAGTGATACTGCTAATAGTGGTCCACGATTTACTAGCGTTTCTATGATTGATGACAATTTCATGAGGAAATTGCTATCCCTTTCTATGAGACACCCTCAGTAAATGTTTTCATAGTACTTAAAAACACCATTATAATGCAATGTGAGTGTCAATGTCAGCCCCCTATAATGCCACAACCTTTTAATCATCAGCCAACTGCAACAAATCTACCCTTACATAGTATTTACTAATGAATCATTACATTTCCTTTACAAATTGGCATAACCATGTGACATGCACTTGCTGAAGATGACTCTAATAATGGATTATATGTGTGTTCTTAATACAGTTTATTGTGCATGCACATCATGGGGAGTATGTCCCAATTATATCAATAACTAGATATCATTATTTTAATTTAAACGACTGTATATGGCAACAGTATCTAAGATGCACTGTCCTTGGAAGTAGCCTACAGTGAAGCCTAGGACTTCATTTAGAAAGGCggtccaattctgatattttttccaagtaattggtcttttgaccaatcacatagATCTTTTCACACCAGATCTTTTCGgaactgatctgattggtcaaacgACAAATTAGTGAAAGAAATATCATAATTGGGCCACCTGTCTAAATGCAGCCGCGAGACTTAGAGCTGAGTGAGTCAAGTTCAATTCAGACATCCCTTCTTGGTAGTCAACATGAGGGTGCTATGGGCTTAGCTAGTCATTGACCTGATCTCACACTTCAAAGCATCTATTTGGACCTCCTACTAGACTTGAGGTCCACATTCCATATGACTCCACATGCCTGTGTCTAAAGCTTTGTGTCTGCAGCTTTTTGCCAATAAAGTAATGCTATAGATAGATCGACAGCTTGTACTATTTTCTTCAGTCAATTATTCTTACTGATACCAAGGAAATGGGAATTTTAAGCACAAATGTCCTACTCACCAACAGTCAGTACATATTGTAATAACAAATGTAAAAAGGTTATCTGTGATTATTTACATAGAGAACACTAACATGTCACATGCTAGAGTGCAGAAGAATTTTCATATGAATATTTGTGAATTCATCTATTGATTAAACTGCTACAATTACGATTTATTTTGAGTAATGCTTTGATGAAAGGATTTTATACAACATTCATTTCCTTCTATcctttcccctgtcctctctccctcttgcaaACTTTCCAACTTAATTTTGGTACCACATGGCATGATTTTTGTGGCTCTTTAATTTTGTATGTTTAAGATCACAAGTTGCTGTGATATTTAATTTGAAATTGTGAAGTTTGTACGATTTTTATCACGCTGGTGTTGACATCTCTTACTCTGAATAAAACGTGTGTTACAACACTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU794342 lncRNA downstream 7338 32581758 ~ 32582960 (-) False G697966
TU794343 lncRNA downstream 7506 32581758 ~ 32582792 (-) True G697966
TU794156 lncRNA downstream 58459 32531613 ~ 32531839 (-) True G697807
TU794152 lncRNA downstream 60308 32529632 ~ 32529990 (-) True G697803
TU794129 lncRNA downstream 71524 32514133 ~ 32518774 (-) True G697781
TU794369 lncRNA upstream 26697 32664948 ~ 32665251 (-) True G697992
TU794370 lncRNA upstream 27368 32665619 ~ 32665846 (-) True G697993
TU794326 lncRNA upstream 46536 32684787 ~ 32687854 (-) True G697956
TU794379 lncRNA upstream 53711 32691962 ~ 32692607 (-) True G698000
TU794458 lncRNA upstream 150758 32789009 ~ 32789408 (-) True G698076
XM_036985315.1 mRNA downstream 410 32570016 ~ 32589888 (-) True cep43
XM_036985316.1 mRNA downstream 415 32570016 ~ 32589883 (-) False cep43
XM_036985309.1 mRNA downstream 423 32570016 ~ 32589875 (-) False cep43
XM_036985311.1 mRNA downstream 424 32570016 ~ 32589874 (-) False cep43
XM_021612374.2 mRNA upstream 32494 32670745 ~ 32682449 (-) False LOC110529818
XM_021612375.2 mRNA upstream 32494 32670745 ~ 32682526 (-) True LOC110529818
XM_021612379.2 mRNA upstream 339545 32977796 ~ 32986672 (-) False LOC110529821
XM_021612380.2 mRNA upstream 339545 32977796 ~ 33011990 (-) False LOC110529821
LOC110529232 mRNA upstream 752726 33390977 ~ 33405852 (-) True LOC110529232
TU794118 other downstream 90888 32498799 ~ 32499410 (-) True G697774
TU793919 other downstream 372749 32214486 ~ 32217549 (-) False LOC110529804
TU793920 other downstream 372749 32214486 ~ 32217549 (-) True LOC110529804
TU792983 other downstream 910563 31657726 ~ 31679735 (-) True LOC110529793
TU792778 other downstream 1112271 31477354 ~ 31478027 (-) True G696499
TU794745 other upstream 350994 32989245 ~ 32990061 (-) True G698356
TU795919 other upstream 1304771 33943022 ~ 33952356 (-) True G699468
TU795985 other upstream 1385040 34023291 ~ 34023885 (-) True ankef1a
TU798118 other upstream 2944747 35582998 ~ 35589877 (-) True G701454
TU798044 other upstream 3003104 35641355 ~ 35687636 (-) False LOC110529865

Expression Profile