RNA id: XM_021612375.2


Basic Information

Item Value
RNA id XM_021612375.2
length 5069
RNA type mRNA
GC content 0.46
exon number 8
gene id LOC110529818
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 32670745 ~ 32682526 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGATCGCGGAAGTAGCTGTGATTTTGAAGACCTGTTTTTCTTCATCACCCAGCAGATAGTCTATTTCGAAAGCAAAAGTAATTAATTCATGCGAATACATAGGCAAAGGAGAAGCATAAGTACGTCATGTTACaatgtatagctagctagctaacttttatatgtttatatgttGACATTACGCTTGTCACACAGAAATAACATATTTGCTTGTCAGATAGCGGctagcctaacgttagctagccaaatATGTTTTTGTGTTAACTAGCATGCTATCTGCACTGTTTACAACTAGCTAATCGTTTTCCTAGCATTTCAACACATAGAAAGTTAGTTTGTTCACATTGCTCAAGTTAAGTTAAGTGCAATGACCGGTGCCTCCACTTTCAAGTAATTGCTGGTCTAAGTGATGTTCAGATTGACTGGTCTGTATAGTATAGTACGCAGGGCAGTCTGCAATGGCACAGAGGACATCGTGAAAGGCACATTCTTCTACGCTGTGAGGAAAGGATTCAAACCTGGCGTTTACAAAACCTGggatGAATGTAAGAGCCAAGTCGACAAGTTCCCATATGCCAGCTACAAGAGGTTTGCAGCAGAAAAGGATGCATGGGCATTTGTCAGAAGCCTAGCAACCTCGATAACGCCAGACCTGTCAGAGGGAGCCAGCTATGAGGCAACACTCCCTAGAAGAGCACCGGAGGCCCTTGAGTACATACCCATTGGTCAGAAGAGGCACTATGATCACATAGACGAGGAGGAGGTGTCCCCTGCCAAACAGAGTCAATACAGCAGCCCATCTTCAAAAAGCTCTGATGGATTCACCTACATTGGTGATGCAGTGGTGGTGTACACAGATGGTTGCTGTTCAGGCAATGGGAAGGCCGGGGCCCGAGCTGGCATCGGAGTGTACTGGGGACGTGACCATCCTCTGAATGTAGCTGAACCACTGGATGGAAGACAGACCAACCAGAGAGCCGAATTACAGGCAGCATGTAAAGCCTTGGAGCAGGCCAAAGAGATGAACATCAAGAAGTTGGTGCTTTATACAGACAGCAAGTTCACCATAAACGGTGTCACCAGCTGGGTGAAGAACTGGAAGCTGAACAACTGGAGGCTCAACTCTGGTGGCCCCGTCATCAACAAAGAGCACTTTGAAAAACTTGACAAGCTGAATGAAGAGCTGGAGGTTGTATGGTTGCACATCCCGGGCCACGCTGGGTACCCAGGGAACGAGGAGGCCGACAGGCTGTCCAGAGCGGGAGCAGCGAAACACTTAGATTAGCCAAAGGAAGATTATCTCATTTACTGCTCCTGGGCAGTTCATTCAACATTTGGATTATGGTTTTGAATGGAATATGGGAATTATATATTGTCTGTTCTGTTGGGCTGCCATGTTCTAAATGTTATGAAATAACATCTACTTCCATCCTGTTTGACATCTTTATGATTCTTTCTAAGTTAAGGAATGAATTCAGCTTGTGCTTGTATCGTATGAACATTTCTCAATATTCCAAAATCATTCCATTCTGATTGATGAAACGGTTCTGTAACCACTGTGTAATGTACACTTCAGACGGTAGATGGCGCTCTAGCTCATCAAAACAAATCCAATACCTCGGAATAGGACTGGCTCTCTGAATTGCATTCCGTACTAGGCTCCTCTGTGGAAAGAGGATTCCTCACATAGAAGATGGATTTCTCTGGTTTCTATGTGAGACATGCTGCATGTTGTAAGATAACGGCCACTTatgacatttgtgtgtgtgtgatctaagGATTATTTTTCTTGCTCAAAAGCCCGTCTGTTACTAGGGCTAGTGGTCACATGAACGTTTCCCTCTTCTAAAGAAAAACAACACACGCTTCAAAGATCATCTATTCATGTATACTCTGACATGAAATGATCTTGGTGATATTCTCTTTGACTAGTTGGTGCACAATTCCATCTTCTCCACTTTACTCAGTCAGCTCTTGGCAGATACTACTTAGTCTTTCAGTACGTGTCTCATCCATTCAGTAAGCTGGTGTCTAGACAGTGGGCCTATACGTGTGCGAGGGAAAATAATGACAGCTCTAGCTGAGAGAAATCTCCATATAGCCTTTCCCCTCTGTGAGGTTGGTGATTGTAGAAAACCAGAGCACCAGGAATGACTGTGCCTGTCTCTGACcttagctggctggcttctccACGGCACGCTCCCGGCTTGTCTGGAGATGTGAAGTCCTGCCTGGGGCTGGGTGTTGGGAGATGCTGCAGTCGGAGGTCGATGCGAGACGGGGTGGAGAGGGGGTCACGGCGCTTCACCACATCAGACTGAAGCTCGTTAGGGCTTCGTCTCAACACATTTGCTCCATCAGCAAATATGCTGCTCAGGTATTCATCTGTTTGACACCGCCTCTTCTATTTGGCTCTTGTGGCTAACTAGCTCTTGTCGCCTAGTTGTTTCGTTTCGCTTGCCAAGCTCAGGGCAGGTCAGTCACGGCGGTTGACCGAAGAGACTTCTGCGTTGGTTACTGTTAAGAGCGCTGGGTGTTGTCTGCATGAGTAACTCACAGTAAAATCTAGATTTCAAGATGGTGTTCTATCAGGGTGTTGACTGCCACAGTGAAAGATATTGCAAAGCCCTGTGGTTATACAGATCATCCATTTGAATCTGTTCTTGTTTTTGGTATAATATTGAGTTCTCTGTGTGTGGCTTGAGGATAAGTATCTAACGCTATTCATCCATGTGAGATGCAGGGGAGGAGTAGTAGACTTGAGTCCTGAGCCCTAGTCGTTACCGCACATCTGGTGCCGACGCAGTTCAGAGACTGCTGGCAGCTGACTCTTGTCATGTGCATTAGAAGATGTATGGAGAATGATTCTCTCCTAACGAATCcagcaattgtgtgtgtgtgacggtgggAAACATCAAGGGAAGCCACTCTTTGTGGAAGGCAGAGGGAGTCACAATCAAACATCGTGGCAGCCGCCTCTGTGGAGCAAAGCGGCACCTCGGAACAGAACTGACATCTGTTTCCATGACAGCTGTCTGGATCAGCCTAACTAACTCCTGCCTTAGAACTAATGTGACCGTTTGATTTCGCAGTGAAAGGAAAGACATTCTGTCAGCAGTACTCACTCAGTATTGTTTGGTTTCCGCGAATCGAGAGGTAGTCGAACAACAAGTTCGTTTTTATCATCTCAACAGGGTGAGCTAATGCCTTTCAACCTTCTGTCGTCATAGGACATTAATTGGAGGTGGGGAAATAAGGGGCCGACATGAAGGGAATAGGAGGTGAACAATGTTGAGAGAGACTCTTCATAAGCAAGAGAAGAAAGGAAAAGTGAGAAGAAGAGAATGTGCACATGCAAAGAAACTTGGAAGCTAAAGTCATTGAAAAGTATGAGCAGATGAATCTCGCTACCCACTGTGCCACGGGAGGTTACTTCATCAGCCTCATTagtatctctctgtccctctctttacCGGCATTCAGTCTCTCCCaccgtctctctgtttctgtctcccggCCTCtcatgctgtctctctctctcccaccgtccCTCAGCaacctactcctctcctcctccccttcttacctccatcccctcctcctcccacacgTCTTCCTCTcgcctcatcctcctcccctctctggtaAGTGTCGGGCACGACTGGCAGACAGGCATCCAGGCCCTGTCTTGGCATGGTGCCCCTGGAGTAGACCCTGtgaggctgggttactgtaggcAGTAGCCAGGCCCAGTGTGGTCACCTCAGAGCCTGACAGCTCACTCCCAGAGACATGCACCGCTGGCAGAGGGGGGAGGGCAGCGCCAGCCTGCTGTCTGCATGTGAGCCATACCCAAGAGGGTGCTTGACAAGGTGAGAGGCTGGCACTGCGGTACTCTGCAGCTCCTCCTCTCAAGGCTGCCTCcagacccccccctccctcctcggAACACACCTGCTCAGGAAGAGGAACACTCTCCTAACTCATCCTGTAGCTTGTCGAAAATTGCAGGTATCAGATGGGGTTTTGTGTCCATCTGAGAATAGCAGACAGGTGGTTTAGCCCAGTTTCTTACTCTCTGTAGATTAGACGTATCGATCAATTACAGCAAGTCTTCACTTTCTACCATCTAATTACACAAGATCCATAAAAAGTAACAGGGTTCAGTTGATAAAATGTCCCCCCCTAAACCAGCGTTTGTGGGTCCTCGTCGAGACAATATTTGGAGACTGAATACTATGGTCATGAATTTTGAATTCTATAAGCACGTTAGCTCTATTGTCTAGCTGAGAGGCAGAGTTTTCTCCACTCGAGCTAGGAAAACTCCACACTGGTAAACTGTCAGTCTGTGTCTTAGTCCCGCTGTTCAACCCATAGCTTGATGAGGAGTCTGAGAACAAGGCATTAGCTTGTGCCAGCATAGAGACATTTTTAAGTCTCTCTTCTCCACAGGCTGCTTGGGATGAAAAGCTCCAGTTTGTGCCTGTGGAAAGAGAACGGCCTTGAAGTTGTACTGTCCCCTGCTGGCTTGTATAAAAACATCTACACAGACACGCCGCAGTAAAAAATAACTATTATGAGAGTATTACGACTGAGTTTTACCTGGACACAGTCtagcatagcaaggcagcaaaGTTTGGTCTAGAATTGTTCAAAATTGTAGTAATTACTTTCATCACAGATAGAGGACACATTGTGAACAAGGGTTTCTTTGTAATGTTCAGGTCTGAGGCAGTTGGACTGGCAAGGTTACTGAAACATTAGATCATAGGGATCAGTGCTTTGTGCAGAATGTGTACATTGACTTCAGGGTCCCAATAACATTTCTTTATATTAAAGGGACAGGGCAGTTATGTGATTTTCCTTTTTTGATATTTCGATCTCCGTGTGGAAATAACACTGACATTGTGAAAAATGATGCCCTTTCtgtataagagctgtttgaaacaAATGCCTGGATATTCAGTCACTTCAGGTGGTATGAAACTTGTGTCCCACATCATGATGTCACAATGTGATCTGTTTATAATAGACCAATGTCTGTTCATCTGGCTAAGGATGGTCTAAAG

Function

GO:

id name namespace
GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic biological_process
GO:0004523 RNA-DNA hybrid ribonuclease activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K03469 rnhA, RNASEH1; ribonuclease HI

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU794370 lncRNA downstream 4899 32665619 ~ 32665846 (-) True G697993
TU794369 lncRNA downstream 5494 32664948 ~ 32665251 (-) True G697992
TU794342 lncRNA downstream 87785 32581758 ~ 32582960 (-) False G697966
TU794343 lncRNA downstream 87953 32581758 ~ 32582792 (-) True G697966
TU794156 lncRNA downstream 138906 32531613 ~ 32531839 (-) True G697807
TU794326 lncRNA upstream 2261 32684787 ~ 32687854 (-) True G697956
TU794379 lncRNA upstream 9436 32691962 ~ 32692607 (-) True G698000
TU794458 lncRNA upstream 106483 32789009 ~ 32789408 (-) True G698076
TU794463 lncRNA upstream 107961 32790487 ~ 32790714 (-) True G698081
TU794484 lncRNA upstream 122897 32805423 ~ 32805629 (-) True G698102
XM_036985300.1 mRNA downstream 31896 32590298 ~ 32638849 (-) True myt1la
XM_036985305.1 mRNA downstream 32494 32590298 ~ 32638251 (-) False myt1la
XM_036985307.1 mRNA downstream 32494 32590298 ~ 32638251 (-) False myt1la
XM_036985308.1 mRNA downstream 32494 32590298 ~ 32638251 (-) False myt1la
XM_036985306.1 mRNA downstream 32495 32590298 ~ 32638250 (-) False myt1la
XM_021612379.2 mRNA upstream 295270 32977796 ~ 32986672 (-) False LOC110529821
XM_021612380.2 mRNA upstream 295270 32977796 ~ 33011990 (-) False LOC110529821
LOC110529232 mRNA upstream 708451 33390977 ~ 33405852 (-) True LOC110529232
XR_005052863.1 mRNA upstream 727277 33409803 ~ 33410951 (-) False LOC110529824
XR_005052861.1 mRNA upstream 727277 33409803 ~ 33411406 (-) False LOC110529824
TU794118 other downstream 171335 32498799 ~ 32499410 (-) True G697774
TU793919 other downstream 453196 32214486 ~ 32217549 (-) False LOC110529804
TU793920 other downstream 453196 32214486 ~ 32217549 (-) True LOC110529804
TU792983 other downstream 991010 31657726 ~ 31679735 (-) True LOC110529793
TU792778 other downstream 1192718 31477354 ~ 31478027 (-) True G696499
TU794745 other upstream 306719 32989245 ~ 32990061 (-) True G698356
TU795919 other upstream 1260496 33943022 ~ 33952356 (-) True G699468
TU795985 other upstream 1340765 34023291 ~ 34023885 (-) True ankef1a
TU798118 other upstream 2900472 35582998 ~ 35589877 (-) True G701454
TU798044 other upstream 2958829 35641355 ~ 35687636 (-) False LOC110529865

Expression Profile