RNA id: XR_005052863.1



Basic Information


Item Value
RNA id XR_005052863.1
length 554
RNA type mRNA
GC content 0.40
exon number 4
gene id LOC110529824
representative False

Chromosome Information


Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 33409803 ~ 33413009 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCAGGAAGAAAAAGCAATTTGCGatcatGGTGGGTGTCAGAGTGGTCTCTCCTGTCCTTTAGGGATCCCTCACAGTGAAGTATGAGGATCAGAGTACAGCTGGACTGTGGAAGTCTGTTTCTCCTACCCAGTCAACAGAGAACATCTCCACAAGTTCAAACACATCTATGGAAACGTTTTTCACCTACTTCTGTAATCTGGATGAAGACGCACACCACCCTCTGAAGCTGCTACCAGAGTATGTCTATATAGTCTACTACAAGTTTGAAtgcatgaccaaagGGTCTGACATCTAAGCGTCCTGATGGCAAGGCAGACGAATGCAAATCTCTTTGAAACCGAAGAATCTATTTGAGAAATAAGTGGTCGCCAACTGAATGTGCTTCAAGCTAATTTGAATATTTTAATAGACCTTTCATTGTTGATACCCAAATCTTTTTCCTCAAACATTCTGTTTCCTATCACTCCTTGGCTTGATGAAATCTATCTGatctttttttttaatcaatgttGAAGGGAGACAATCGCATTCAataaaatcaaaaaaaaaaaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU795143 lncRNA downstream 134851 33274665 ~ 33274952 (-) True G698742
TU795130 lncRNA downstream 142654 33266871 ~ 33267149 (-) True G698729
TU795062 lncRNA downstream 194834 33214729 ~ 33214969 (-) True G698663
TU794866 lncRNA downstream 321195 33088396 ~ 33088608 (-) True G698474
TU794762 lncRNA downstream 403158 33006416 ~ 33006645 (-) True G698373
TU795397 lncRNA upstream 10485 33421436 ~ 33424015 (-) True G698986
TU795509 lncRNA upstream 175468 33586419 ~ 33586673 (-) True G699093
TU795744 lncRNA upstream 210727 33621678 ~ 33622113 (-) True G699309
TU795747 lncRNA upstream 215288 33626239 ~ 33626569 (-) True G699311
TU795765 lncRNA upstream 236485 33647436 ~ 33647645 (-) True G699323
LOC110529232 mRNA downstream 3951 33390977 ~ 33405852 (-) True LOC110529232
XM_021612380.2 mRNA downstream 397813 32977796 ~ 33011990 (-) False LOC110529821
XM_021612379.2 mRNA downstream 423131 32977796 ~ 32986672 (-) False LOC110529821
XM_021612375.2 mRNA downstream 727277 32670745 ~ 32682526 (-) True LOC110529818
XM_021612374.2 mRNA downstream 727354 32670745 ~ 32682449 (-) False LOC110529818
XM_021612383.2 mRNA upstream 15566 33426517 ~ 33435877 (-) True ints9
XM_021612386.2 mRNA upstream 43336 33454287 ~ 33458472 (-) True LOC110529827
XM_021612387.2 mRNA upstream 73850 33484801 ~ 33549308 (-) True LOC110529828
XM_021612410.2 mRNA upstream 274418 33685369 ~ 33689052 (-) True LOC110529832
XM_036985352.1 mRNA upstream 308423 33719374 ~ 33822238 (-) False cdc42bpab
TU794745 other downstream 419742 32989245 ~ 32990061 (-) True G698356
TU794118 other downstream 910393 32498799 ~ 32499410 (-) True G697774
TU793919 other downstream 1192254 32214486 ~ 32217549 (-) False LOC110529804
TU793920 other downstream 1192254 32214486 ~ 32217549 (-) True LOC110529804
TU792983 other downstream 1730068 31657726 ~ 31679735 (-) True LOC110529793
TU795919 other upstream 532071 33943022 ~ 33952356 (-) True G699468
TU795985 other upstream 612340 34023291 ~ 34023885 (-) True ankef1a
TU798118 other upstream 2172047 35582998 ~ 35589877 (-) True G701454
TU798044 other upstream 2230404 35641355 ~ 35687636 (-) False LOC110529865
TU798045 other upstream 2230404 35641355 ~ 35687465 (-) False LOC110529865

Expression Profile