RNA id: XM_021612383.2


Basic Information

Item Value
RNA id XM_021612383.2
length 2909
RNA type mRNA
GC content 0.50
exon number 16
gene id ints9
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 33426517 ~ 33435877 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATATAGTTGTTTAGTTTAGTGTTAGCATTTGCTATCTACAGACTGACAGCTACAGGGCACGGTCTTGGCGTCTCTCTCTGCATGGCTTCTATGTAGTAATATGTTTGTAGGTAGGCAATCTGTTTGAGATGATTTGCGTCCCATCATGGAAttaatgtaacgttagctaactaattTCGCGTGTATCCAAATATTATGGATATACTGTCAAGATACATATCTGTCCCCTAACAATAGCAGTTATTGACCACAAAGCGGCACGGCGGGCTGTTTAGCTTCCGCCTGTtatttctttggattggtggatacatctcattattgtaatcAATATTTGAATATTGAATAAGGGTTGTAGACGTCGACCGTCTGTAGTCAATGGAGAGATGCTACGCTACGAGCCTCATcacatgaatatgcatagccacTCTCCCAATAGTGTTCAGGTCAAGGATGAACTCTTTCATGCAAGGACACTTGGTACTCCACAACTGTAGGGGGTGGTAAATTCAACAATTTATGTTTGCAACAAAGCGGTAGTCCAAAAGTAAGAATTGTCCACAATGCTGTAGATAGACTTGATTTGTCTACATTATAATCGATAAAGATGAAATTGTACTGTCTGTCAGGTCACCCCACCCTGCCTTGCAATGTCCTCAAATTCAAATCCACCACCATCATGTTGGACTGTGGGCTGGACACGACCTCTGTCCTGCAGTTTCTACCACTGCCTCTGGTGCACAGCCCAAGGCTTTCCAAGCTCCCTGGATGGGTGTCTAAAGATGGCACAATAAACCTTGAGAAGGAGCTGAAAGAGTGTGCAGGTCGCGTCTTTGTAGACTCACAGCCAGAGTTCTGTCTCCCTGAGAAAGAGCTGCTGGACCTGTCCaccatagacgtcatcctgatcTCCAACTACCATTGTATGATGGCCCTGCCTTACATCACCGAGCACACCGGCTTCACTGGGACTGTGTATGCCACAGAACCAACGCTGCAGATCGGCAGACTTCTGATGGAGGAGCTGGTAAACTTCATGGAGAGAGTTCCCAAGGCCCAGTCTGCTACCTGCTGGAAGTATAAGGAAATACAAAGGCTGCTCCCTGGCCCGCTGAAGGATGCTGTTGAAGTGTCGACTTGGAAGAGATGCTACAGTATGCAGGATGTCAACTCTGCTCTCAGCAAGGTGCAGCTCGTGGGCTACTCGCAGAAAGTGGAGCTGTTTGGCGCCGTGCAGGTCACACCCCTGAGCTCTGGTTACTCATTGGGTAGCTCTAACTGgatcatccaatcacattatGAGAAGGTTTCGTATGTCTCTggctcctccctcctcaccacacaTCCACAGCCCATGGATCAGAGCTCCCTAAAGAACAGTGACGTTCTGATTCTGACGGGCCTCACACAGATGCCAACCGCCAACCCAGATGGCATGCTAGGGGACTTCTGCAGTAACCTAGCCATGACGATCCGTGCTGGTGGCAACGTGCTGGTGCCATGCTATTCCTCGGGGGTGATCTATGATCTCCTGGAGTGTCTTTACCAGTTCATAGAGAACGCCAATCTAGGCTCCACCCCCTTCTACTTCATCTCGCCCGTCGCCAACAGCTCTTTGGAGTTCTCACAGATCTTCGCAGAGTGGCTTTGTCACAATAAGCAGTCCAAGGTCTACCTTCCAGAACCTCCTTTCCCTCACGCTGAGCTGATTCAGACGAACAAGTTGAAGCACTACCCCAGTATCCATGGCGACTTCAGCAGTGAGTTCCGGCAACCGTGTGTGGTGTTCACCGGACACCCATCTCTTCGCTTCGGGGACGTGGTGCACTTCATGGAACTGTGGGGCAAATCCAGCCTCAACACTATAATCTTCACTGAACCAGACTTCTCCTACCTGGATGCGTTAGCACCGTACCAGCCCCTAGCCATGAAGTGTGTGTACTGCCCCATTGACACTCGCCTCAACTTCCACCAGGTCTCCAAGCTGCTCAAGGAGGTCCAGcctctccaTGTGGTGTGTCCAGAGCAGTACACCCAGCCCCCACCAGCCCAGTCCCACCGCTCAGACTTGATGCTGGAGCTGCAGCCCCCTCCCATGCCCTATCGCCGCTGCTCTGTGCTGGGCCTACCCTTCAGACGCCGCTGGGAACGCATCCAGCTGCTGCCAGAGCTGGCCAAATCCCTAGTGCCCTCTGAGATCAAACCTGGCATCTCTGTAGCAACTGTGTCCGCAGTTCTGCAGTCCAAGGATAACAAGCATAcgttgcagCCAGTCCCCAAGCCCCCTCCGCTGCCCCCCAGTAAGAAGAGGAAGCGTGTAGTAGAGGAGCCCCCAGAAGTGCTGGCCCCCAAACCCCTGCTCAGTGGAGCTGTACCCCTGGAAGCCTTCTTAGCCATGCTACACAAGCACGGTATCACGGAGGTCAAGGTAGAGGAGACCACAGACGGCCACATTCTGCACCTGCAGGCCGAGGACACCCTGATCCAGCTGGAGGAGGACGGGACACACATTGTGTGTGACGACAACGAGCCACTCCGTACCGCTCTCAGGGACCTGGTGCTGCGCTTCCTCATGAAACTCTGACCTTTCCCCCGACTTCAACGGCACCGATTTATCCTCAATGTGCGCGTTTGAGTGTTACATTGCAGTTGGCAACTGCAGATGGACTGTTCTGCAAATCTGGCATTCTAAATGACTACTTATTATAATTGGTAGATCAGTCCATCTAGTCACCAACTGCCTATGTAGTCAATCTCAAACATGCACTTTCTCTACTGCATTAGCTGGAAGTGGCTTCCTTGGCTTGTCTCCTCTGTTCAGCTGGTGATGTCattgttgtttgttttgtatgtaaGCAGGTAGTACTTTTATAAATAGTCTTGTAATAAACTACATTAAGGAAAAAGTTA

Function

GO: NA

KEGG:

id description
K13146 INTS9; integrator complex subunit 9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU795397 lncRNA downstream 2502 33421436 ~ 33424015 (-) True G698986
TU795399 lncRNA downstream 15086 33409813 ~ 33411431 (-) False LOC110529824
TU795400 lncRNA downstream 15086 33409813 ~ 33411431 (-) True LOC110529824
TU795143 lncRNA downstream 151565 33274665 ~ 33274952 (-) True G698742
TU795130 lncRNA downstream 159368 33266871 ~ 33267149 (-) True G698729
TU795509 lncRNA upstream 150542 33586419 ~ 33586673 (-) True G699093
TU795744 lncRNA upstream 185801 33621678 ~ 33622113 (-) True G699309
TU795747 lncRNA upstream 190362 33626239 ~ 33626569 (-) True G699311
TU795765 lncRNA upstream 211559 33647436 ~ 33647645 (-) True G699323
TU795766 lncRNA upstream 211831 33647708 ~ 33647983 (-) True G699324
XR_005052862.1 mRNA downstream 13508 33409803 ~ 33413009 (-) False LOC110529824
XR_005052860.1 mRNA downstream 14987 33409803 ~ 33411530 (-) False LOC110529824
XR_005052861.1 mRNA downstream 15111 33409803 ~ 33411406 (-) False LOC110529824
XR_005053041.1 mRNA downstream 15365 33410866 ~ 33411152 (-) True LOC118965663
XR_005052863.1 mRNA downstream 15566 33409803 ~ 33410951 (-) False LOC110529824
XM_021612386.2 mRNA upstream 18410 33454287 ~ 33458472 (-) True LOC110529827
XM_021612387.2 mRNA upstream 48924 33484801 ~ 33549308 (-) True LOC110529828
XM_021612410.2 mRNA upstream 249492 33685369 ~ 33689052 (-) True LOC110529832
XM_036985352.1 mRNA upstream 283497 33719374 ~ 33822238 (-) False cdc42bpab
XM_036985353.1 mRNA upstream 283497 33719374 ~ 33822238 (-) False cdc42bpab
TU794745 other downstream 436456 32989245 ~ 32990061 (-) True G698356
TU794118 other downstream 927107 32498799 ~ 32499410 (-) True G697774
TU793919 other downstream 1208968 32214486 ~ 32217549 (-) False LOC110529804
TU793920 other downstream 1208968 32214486 ~ 32217549 (-) True LOC110529804
TU792983 other downstream 1746782 31657726 ~ 31679735 (-) True LOC110529793
TU795919 other upstream 507145 33943022 ~ 33952356 (-) True G699468
TU795985 other upstream 587414 34023291 ~ 34023885 (-) True ankef1a
TU798118 other upstream 2147121 35582998 ~ 35589877 (-) True G701454
TU798044 other upstream 2205478 35641355 ~ 35687636 (-) False LOC110529865
TU798045 other upstream 2205478 35641355 ~ 35687465 (-) False LOC110529865

Expression Profile