RNA id: XM_036985340.1


Basic Information

Item Value
RNA id XM_036985340.1
length 1891
RNA type mRNA
GC content 0.44
exon number 4
gene id LOC118965509
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 33446421 ~ 33453220 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AAAACCTACTAGTCACTGGACTGGCTTCCTCTTTGGCTACTGCTCCAGCGTTTCCTGGGTGGGCCGGGCCGAGTCTCTTTCCCAGAACTTTATGGACTTGTGCCGGATAGCAGTGATGGGCCATTCTTTCGGTGGAGCAACAGTGATCGAAGCACTCTGTAAAGAGGTCAACTTCAAGTGTGGCATTGCCCTGGACGTGTGGATGTTCCCCCTGGATGAGGAGATCTACGCCAGGGTAAAGCAGCCCATCTTCTTCATCAACTCTGAGAAGTTCCAGTGGGCCGGAAACATCATGGCCATGAGGAAACTGGTCCCACCTGACTCCTCCTCCACACAGAGGAAAATGGTCACCATTAAAGGAACGGTTCACCAGAGCTTCCCAGACTTCATCTTCCTGACAGGCAACTAGATCGGAGATCCTGAAGCTGAAAGGAGAGATCAACGCTCAGGTTGCCATCGATCTCTGTAGCATTGCTAGCATTCCTGCAGCGACATCTAGAAACCTGGAATAACCTGGAAAATCATTTGGAGTTCCTGCACAACACACTCGTCACTGGACTGGCTTCATCTTTGGCTACGGCTCCAGCGTTTCCTGGGTGGGCCGAGTCTCTGACACAAAGACGACGTCATCGTTGCATTTCTCCTCCACTCTCAGGGTGAGATGCTTCACCTGTGACATCCCAACTTCTGTATGGAAGAAAGGTGAGGGTAGAGACGTGATCAGGAAATCAGAGAAGATCAGGAAAAATAAGACATTTGTTTAaatggagaggaagaggcaaagcgagaggATTTACTTAGCCCAAAATCTGTCAGCGTGAGATAAGCACTGTTTTTGCATGGAGGTCTATGGCAGTGTCAAATTACGTGACgcttatttgatctaatagaCGTTTTGTAACGTTTACTGTTActgtactgatataagtggatGCACGTGGCATTCctgcaactttgagaaaaaacggcttagttgtgcctgttgttcacatgcctatctgccctctcattggctagaatggtcccacctgatctcgccaGCCTTCAATCATTGaggacatgtacagtacagtgagctccaaaataATTGGGAGAGTGATATATATTCGTTTCGACTCtgcactccagcactttggatttgaaatgatgaaatgactatgaggttaaagtgtagactgtcagctttaatttgagggtattttcatccatatcgggtgaaccgtttagaaatgataGCACATTTTGTACATAGtcaccccattttaggggaccaaaagtattgggacaaattaacTTATGTGTATTAAGGTAGTCAAGTATTAAGGTAGTTTAGTATTTGGTCTGTTGGGTTTtgagaatatgaaatatacttattcatgtcactgagggagagagggtaatgtataatgtttacattatgtcaggatatgttgttgttagccatcagggatcctATGGGAAGGATCCTCTGTGAGGAGAAGAAACACAGTCTGGTACCAGTTACCATGACAGatgtgagttggggaggagtgagaggtcaggtcagatgaagtgaggaagaacagatgtCACTAAagttctgtctagcaacagagatgcattggctgttcggttgtgtaggaggagactcagcctaggaaaaagggttaaatatcagtgcttgtgtgaaaatgtatttgtctaatgcagctgtattgatccTCTGGGAAGAATTACACTTGGTTAATCTTTCACAGTGTCCGGTGAGTttttttactctgagaattagaacctgACAGGTTCCATATTTCTAGCACACAAtaattacatcaagcttgtgactacaaactcgttggatgcatttgctgttttggTTGGGTTTCATaatattttgtgcccaatagaaatgaat

Function

GO:

id name namespace
GO:0016042 lipid catabolic process biological_process
GO:0003847 1-alkyl-2-acetylglycerophosphocholine esterase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU795206 lncRNA upstream 19410 33368943 ~ 33427011 (+) True G698804
TU795239 lncRNA upstream 35685 33409828 ~ 33410736 (+) True G698833
TU795132 lncRNA upstream 176748 33268729 ~ 33269673 (+) True G698731
TU795128 lncRNA upstream 180715 33265491 ~ 33265706 (+) True G698727
TU795088 lncRNA upstream 207865 33238311 ~ 33238556 (+) True G698688
TU795256 lncRNA downstream 16004 33469224 ~ 33469463 (+) True G698848
TU795539 lncRNA downstream 167330 33620550 ~ 33620756 (+) True G699117
TU795543 lncRNA downstream 172652 33625872 ~ 33626127 (+) True G699121
TU795555 lncRNA downstream 189898 33643118 ~ 33643326 (+) True G699133
TU795563 lncRNA downstream 201937 33655157 ~ 33655508 (+) True G699141
XM_021612385.2 mRNA upstream 789 33436288 ~ 33445632 (+) True LOC110529826
XM_021612381.2 mRNA upstream 22401 33411718 ~ 33424020 (+) False LOC110529823
XR_005052859.1 mRNA upstream 22401 33411718 ~ 33424020 (+) True LOC110529823
XM_021612378.2 mRNA upstream 749751 32691529 ~ 32696670 (+) True allc
XR_005053031.1 mRNA upstream 760030 32686167 ~ 32686391 (+) True LOC118965650
XM_021612389.2 mRNA downstream 26989 33480209 ~ 33484404 (+) True sf3b6
XM_021612399.2 mRNA downstream 203413 33656633 ~ 33680837 (+) False LOC110529830
XM_021612400.2 mRNA downstream 203420 33656640 ~ 33680837 (+) False LOC110529830
XM_036985348.1 mRNA downstream 203428 33656648 ~ 33680409 (+) False LOC110529830
XM_021612390.2 mRNA downstream 203428 33656648 ~ 33680837 (+) False LOC110529830
TU790056 other upstream 3653674 29790997 ~ 29792747 (+) True G694036
TU789468 other upstream 4508148 28930760 ~ 28938273 (+) False cdca4
TU789469 other upstream 4508148 28935489 ~ 28938273 (+) True cdca4
TU789102 other upstream 4740669 28704850 ~ 28705752 (+) True G693207
TU789022 other upstream 4888048 28495285 ~ 28558373 (+) True btbd7
TU796067 other downstream 674373 34127593 ~ 34128301 (+) True G699605
TU797136 other downstream 2001628 35454848 ~ 35462040 (+) True LOC110529856
TU797266 other downstream 2159944 35613164 ~ 35614666 (+) True G700685
TU797474 other downstream 2450829 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 3247218 36700438 ~ 36700739 (+) True G702415

Expression Profile