RNA id: XM_021612386.2


Basic Information

Item Value
RNA id XM_021612386.2
length 4080
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC110529827
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 33454287 ~ 33458472 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cacacaatgacattctagacgattctgtgcttccaactttgtggcaacagtttggggaaagccctttcttgtttcatcatgacaatgccctcgtgcacaaagTGAAGTCCATGCAGAAATGGGTAATCGAGATTGGTGTGcaggaacttgactggcctgcacagagccctgacctcaaccccataaaACACTTTTgaaatgaattggaatgctgactgcgagccaggcctaattgtccaaaatcagatgatgatgatgattttgattttggaatgagatgtttgacaagcagatgtccacatacttctggtcatgtaATGTATGGTGATTGTAAAGACATTGTGTTTTGAGTTCAACAAGGATCGTTGAGAAATAACAATTAGACCTACCAAAAGCTGAGAACCTCTCCTCTTTGATAGGGACAACTCGTTGCTTCCAAAGATGTTGATTTCTGCAATTGCATATTGAAATGTTATACAATCACAAGggcggagagtgagtgagaaaggcTCACTCATTACAGCAGCTGGTCTCAGCAAGGCAAGCACAGCTGAAGGACATACACTTCTATAAAAGGCATCATGAGGAAAATGCACTTTTACTGTTTTACAAATTCATGGTTTTATCCTCCCAGTAAATAGGATGTTTTGATTGAGGGGGCCAGGTAGAATGAGTAGCTTGCACCAGTGCAaccaatatttttttaaactcgcACAGCCAAGTCAAGGGGTTGCAAAATGCGACTAAAGGGTTGCAAAATGCGACTAAAGGGTTGCAGTCTGGGGCTATTCATCGAACACCTTGCGAGAGTTCATTTGACGCGTTTAGTCAAatgcaaacaacaacaaaatgtactCTGTTTATGTAAATTAGACTTGCTTACAGAACAGCTAGTTGATATCCAACCAGCAACTGATGCGGAGGTTGTGTCAAGTGCTCCCACACAGACAAGGTATGAGTTTTCTTGTAATGAGTGCCATTCACTGTGTCTTCATCAAACTGAACTATGAATACTCAAAATACTCCGTTCCATTTTAGGATGACGCCGTGCTTGAGGAAGACACCTCATGTCTTGGAGTGGCTATACGTCTCATTGAAGACTGTATGGTTATGTCATCACAGCTGATTGGATGGGTGTCAGCCAAATCCACACAGGGGCAAATGCACTCATGTTGTTTGTTGATTTAAATTATCGTTGTAAATACCCTTTTACAGTTGTGTCGACAGACCATGTGCTGAGATGAAGAAAGCTACCTAATGCAGATGTTGTATCAAGTGCGCCCCCCACAGGACAATGCAAGGACATTTGAAGTAGTAACCTAGAGAGGGagttgttgtataaatatatGCTCATTGGTTGGAACACATGTGATATTCTGTTCATTTATAGGATGATCTACCCGGGGAATCAACATCTAGTCCGTCTGCATGTAGTGAGAATATGAAACCTTTTGGTTCATTTCAGgctgttgtatttctgtgtacgTATTGACAACAATGTAAATGTTGCTGTGTCCAGAGAACAGGGAGCAGAGACTCAAGAGGTAACCAATGTGGAGGTTACATCCAGTGCTTCCACACAGGACAAGGAGGATCTACTCTGTACTAGAGAAGATTGTTTCGGTATGTGATCATGACAAATCAGACTTCCAACACAGCCATCTGCAGACGTGGTCAGACGACTCCTCGATTGTGGGGCGCATTCCACTGTATTGCACATTTATTTGCCAACGTGAATTGTCAGGGCTAATATCTTTGTGTTGTAGAGTGCGCGGGAACAGTTTGCTGAGATTGAAGAGAAAAGCCGGTATGAAGATTGTGTCCCGTGCTCCTACACAGGACACGGTAACAGAGCTGTAGAGTTAAGCTAGAGCGGTGCATCTTCACGTTGTCTGCATCGTGCAAGCTTCGAACGACACCAATGGTATTGTAATCCATGGGAGCCTGATGTGCTGCTTGAGGAAGAGACGCCGTCTCCTGGCGAACACACGGCACCACGTACTCTATGTTGTGGCTTTAAATGGGTTACAGAGTTGATGTTTAAGTTAATTCATTGAGCTGTATCTGAAGATATTTTCCTGACAGTTATTTACATATGGAATTGTATTAGAATTTGTGCTTTGGAGATTGGAGTGGTTGATGACTGGAAAGTGGCTGAGATCGTCAGTTTCCTACAGGAGGAGGTTCAGAGCAGCGCGACAAATGACAAGATCGTGCAACCAACAGAACGAGAGCAAACCATGGAACAAGTCATGCTCCTCCgatgaaatgaaaacaaaaagaCCCAACATGCCCTCTGCTGCAGCACTGCATACAGCCAGCCAGAAGGAACAAAACTGTCTATTCTGTGACAGTGCAGACCACAAATCAGAAAACTGTCCTGGCCACAATATTGCTACACGCAAAGAGAAACTAAAGAAAATTGGAAGATGCTTTGTATGTTTAGGACAGAAACACATAGCAAAATTCTGTAAAGTCAAAGATGTGCCATGTGCAACATGTGGAAGCAGACATCACATTGCTGTGTGTACCGGTAAGAGGAGTGAGGTGCAACCCCCTACTGTTTCTGAAGATGCTGTTGTTTCCTCAGTTATTCCCCATTCGGTGAAGATGAAACCAGATGGACAGAACACTGTGTTGCTACAAACGGCAAAGGCATGGGTAGAAGGCCCATCGGGCAGGAAGATAGCTCGTTGTTTACTAGATGGAGGCAGTCACATTGTCTGCTTCATACATGAAACCCTTGTGAAGGGCTTGAAGCTACCAGTAATCAGACAAGAGGCACTCACTCTTCACACGTTTGGCTCCTCTGCTCCAGCAACGTCCCAACGCAACACAGCGAAAGTCATCTTGGAAAATGTCTGGGACAAACAGCAGAGAATAGAGATAGAGGCAATTGAAACCCCACAAGTGTGCACAGCTGTGATGAAGGTTCCTGGTGAACAAATTCAACATGAGCTCAATAGAAGGGGACTGCAGCTTGCAGACTTTCCAGGAGATGACAATGATCCTGAACTCTCTGTcctgataggagcagactacTACTGGCAGATAGTATCAGGCAGAGTGGAGCGACTGACGGAGACGCTGGTTGCTTTAGAGAGCACCTTTGGATGCCGAGGCAACCTGTTGCCGAGGCAACCTGTATGTTCATCCCACTTGATGAAGACACACTAGTCTCCAAACAACTGCATGCATTCTGGGAGCTTGAGTCTCTGGGTATTATAAGCGAGAAACCACAGAACCCAGAGGAAAACGAGGCTCTACAGAGGTTCGAGGAAACAACCACCTTCAAAGATGGGCGATACCACGTGGAGTTGCCATGGAAACGAGAAATGCCAGAACTCCAAGACAACTATAGAATCGCCAAGAAGCGGCGAGGTCTGAAGAAAAGACTGAAGAAGGATGTGACGTTGTACAGCAGATACAATGAAGTAGTAGAGGACTACTTACAACAGGATATGGCAGAGGACGTGTCTAAGGACAACGCATCAAGTGCAGACAACGTAAAAACGTATGTGATCATACGGTATATACAATAATACTGTCTGATAACACAGGCCAATGAAGTAAGGATATTATTTTTCTTGATTGAGCAGGAATTTCTGCATTTCTGACATACATCATTGAAAATGTATCTACCATTTAAACcaaaggtaatatattatattgcAAAAATAGCCAAGTGactgctctaacaatggaaatacggTGAGCGCCAAaaatattgggacaaattcaccaATTAAATGTATTGAAGTAGTCAAATGTtttgtatttggtcccatattcctagcttGCAATGATTAGATCAAGCTTGTGAATCTACAaagttgttggatgcatttgctgttagttggggttgtgtttcagactattttgtgcccaatagaaatgaatggtaaataatataTTGTGTCATATTGGAGTCACttttttgtaaataagaatatgatATGTCTTTAAACACTTccacatgaatgtggatgctgcCATGATTGCGGATACTCCTGAATGCATCGTGAATACTGATGAGTGAGAAAGAGGCATaaatatcaccccccccccccccccccccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU795397 lncRNA downstream 30272 33421436 ~ 33424015 (-) True G698986
TU795399 lncRNA downstream 42856 33409813 ~ 33411431 (-) False LOC110529824
TU795400 lncRNA downstream 42856 33409813 ~ 33411431 (-) True LOC110529824
TU795143 lncRNA downstream 179335 33274665 ~ 33274952 (-) True G698742
TU795130 lncRNA downstream 187138 33266871 ~ 33267149 (-) True G698729
TU795509 lncRNA upstream 127947 33586419 ~ 33586673 (-) True G699093
TU795744 lncRNA upstream 163206 33621678 ~ 33622113 (-) True G699309
TU795747 lncRNA upstream 167767 33626239 ~ 33626569 (-) True G699311
TU795765 lncRNA upstream 188964 33647436 ~ 33647645 (-) True G699323
TU795766 lncRNA upstream 189236 33647708 ~ 33647983 (-) True G699324
XM_021612383.2 mRNA downstream 18410 33426517 ~ 33435877 (-) True ints9
XR_005052862.1 mRNA downstream 41278 33409803 ~ 33413009 (-) False LOC110529824
XR_005052860.1 mRNA downstream 42757 33409803 ~ 33411530 (-) False LOC110529824
XR_005052861.1 mRNA downstream 42881 33409803 ~ 33411406 (-) False LOC110529824
XR_005053041.1 mRNA downstream 43135 33410866 ~ 33411152 (-) True LOC118965663
XM_021612387.2 mRNA upstream 26329 33484801 ~ 33549308 (-) True LOC110529828
XM_021612410.2 mRNA upstream 226897 33685369 ~ 33689052 (-) True LOC110529832
XM_036985352.1 mRNA upstream 260902 33719374 ~ 33822238 (-) False cdc42bpab
XM_036985353.1 mRNA upstream 260902 33719374 ~ 33822238 (-) False cdc42bpab
XM_036985354.1 mRNA upstream 260902 33719374 ~ 33822238 (-) False cdc42bpab
TU794745 other downstream 464226 32989245 ~ 32990061 (-) True G698356
TU794118 other downstream 954877 32498799 ~ 32499410 (-) True G697774
TU793919 other downstream 1236738 32214486 ~ 32217549 (-) False LOC110529804
TU793920 other downstream 1236738 32214486 ~ 32217549 (-) True LOC110529804
TU792983 other downstream 1774552 31657726 ~ 31679735 (-) True LOC110529793
TU795919 other upstream 484550 33943022 ~ 33952356 (-) True G699468
TU795985 other upstream 564819 34023291 ~ 34023885 (-) True ankef1a
TU798118 other upstream 2124526 35582998 ~ 35589877 (-) True G701454
TU798044 other upstream 2182883 35641355 ~ 35687636 (-) False LOC110529865
TU798045 other upstream 2182883 35641355 ~ 35687465 (-) False LOC110529865

Expression Profile