RNA id: XM_036985341.1


Basic Information

Item Value
RNA id XM_036985341.1
length 1281
RNA type mRNA
GC content 0.49
exon number 13
gene id LOC110529830
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 33656633 ~ 33680837 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTGGAGGGAGGGGTCCGTGGAAAAAACAGCGTTGTTGTAAGGTTGAAAGTAGGGGGTGAAAGTGGCCTATCGGGGTGCAGAGACATCGGATCTCCCATTCAAAAGTAGTATTTTAAGAAGTCACTGaAACTAAGAATAAGTGGATGCTCTAGAAGGGAAGCCAAGTCCTCCGCCAGATAAGGTTTGCTGGAATGGGTAATCTTCTAAAAGTCCTAACAAGGGAAATAGAGAACTATCCACATTTTTTCCTGGACTTTGAAAAAACCAAATGGGGAATCTGTTAAAAGTGCTCACTTGCACTGAGCTCGAGCAGGGGCCAAACTTTTTCCTTGACTTTGAAAATGCACAGCCGACAGACTGTGAGAGGGAGGTATGGAACCAGGTGAACACTGTGCTCCAGGACTCTGAGAGCATCCTCTCTGGCCTACAGGCCTACAAGGGAGCAGGACAGGAGATACGAGATGCCATTCAGAACCCCAATGACATGCTCCTACAGGAGAGAGCCTGGAACTCAGTCTGCCCCTTAGTCATACGGCTCAAAAAGTTCTACGGCTTCTCCCTGAGACTAGAGAAGGCTCTCCAGGGCCTGCTGGAGTCCCTGACGTGCcccccctacaccccaacccagcACCTGGAGAAGGAGCAGGCTCTGGCCAAACAGTTTGCCGAGATCCTCCACTTCACCCTGCGCTTCGACGAACTCAAGATGAGAATTCCTGCCATTCAGAATGACTTCAGTTATTACAGGAGGACAATCAGTCGAAACAGGATAAACAACATGAATTTGGATATCGAGAGCGAGGTCAACAATGAGATGGCCAACAGAATGTCACTGTTCTACGCCGAGGCGACGCCCATGCTGAAGACCTTAAGCACAGCTACGACAAACTTCGTAACCGAGAATAAGACATTACCCCTGGAAAACACCACTGACGTTCTCAGCACCATGGCCAGCGTCTGTAAAGTCATGCTGGAGACACCaGACTACACGAGCAGGTTCAACAGTGAGGACACGCTCCTGTTCTGTATGAGAGTGATGGTTGGAGTCATCATCCTGTATGACCACGTCCATCCCAACGGAGCCTTCAACAAGTCCTCCAAGATCGACATGAAGGGATGCATAAAGGTCCTGAAAGAACAACCAGCAGATAACGTTGAAGGTCTCCTGAACGCCCTCAAGTTCACCACTAAACACCTGAATGACGAGTCCACTCCAAAAAACATCCGAACGATGCTTCAGTAACATTTCTATCGAAAGAGGGTCAATGTactgacctcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU795563 lncRNA upstream 1140 33655157 ~ 33655508 (+) True G699141
TU795555 lncRNA upstream 13322 33643118 ~ 33643326 (+) True G699133
TU795543 lncRNA upstream 30521 33625872 ~ 33626127 (+) True G699121
TU795539 lncRNA upstream 35892 33620550 ~ 33620756 (+) True G699117
TU795256 lncRNA upstream 187185 33469224 ~ 33469463 (+) True G698848
TU795536 lncRNA downstream 3290 33684127 ~ 33685232 (+) True G699114
TU795580 lncRNA downstream 26720 33707557 ~ 33759358 (+) True G699157
TU795613 lncRNA downstream 153535 33834372 ~ 33836476 (+) True G699189
TU795666 lncRNA downstream 179811 33860648 ~ 33860875 (+) True G699239
TU795667 lncRNA downstream 181686 33862523 ~ 33862765 (+) True G699240
XM_021612389.2 mRNA upstream 172244 33480209 ~ 33484404 (+) True sf3b6
XM_036985340.1 mRNA upstream 203428 33446421 ~ 33453220 (+) True LOC118965509
XM_021612385.2 mRNA upstream 211016 33436288 ~ 33445632 (+) True LOC110529826
XM_021612381.2 mRNA upstream 232628 33411718 ~ 33424020 (+) False LOC110529823
XM_036985360.1 mRNA downstream 8377 33689214 ~ 33719635 (+) False fzd3a
XM_036985362.1 mRNA downstream 8377 33689214 ~ 33719635 (+) False fzd3a
XM_036985364.1 mRNA downstream 8377 33689214 ~ 33719635 (+) False fzd3a
XM_036985361.1 mRNA downstream 8800 33689637 ~ 33719635 (+) False fzd3a
XM_036985363.1 mRNA downstream 8805 33689642 ~ 33719635 (+) True fzd3a
TU790056 other upstream 3863901 29790997 ~ 29792747 (+) True G694036
TU789468 other upstream 4718375 28930760 ~ 28938273 (+) False cdca4
TU789469 other upstream 4718375 28935489 ~ 28938273 (+) True cdca4
TU789102 other upstream 4950896 28704850 ~ 28705752 (+) True G693207
TU789022 other upstream 5098275 28495285 ~ 28558373 (+) True btbd7
TU796067 other downstream 446756 34127593 ~ 34128301 (+) True G699605
TU797136 other downstream 1774011 35454848 ~ 35462040 (+) True LOC110529856
TU797266 other downstream 1932327 35613164 ~ 35614666 (+) True G700685
TU797474 other downstream 2223212 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 3019601 36700438 ~ 36700739 (+) True G702415

Expression Profile