RNA id: XM_021612458.2


Basic Information

Item Value
RNA id XM_021612458.2
length 2344
RNA type mRNA
GC content 0.52
exon number 7
gene id LOC110529853
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 35368702 ~ 35385937 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTGCCCGCGAGCTGTTTTTGTACACTCTGCTACAGAACAGTTTTGTGTCGCGCGGGCCTTAAATTAGTAGCTTTTTCTACattattttcaaaatatgctcGCTCACGGAATCAAAACAATCAAACGAAGAACAAGAATTCTCAAGAAACTCTTGCCTCTAATCAAACTCGGATAGAATTCAAATCAAGAAACTTCCACGTAGTTTGAAGGGTGTATTTGTGATTTTATATCGCTCTCGAACGTTTTACAAGACCAAGCTCGCGCCAGTCTGATGAATTCGCCGAACCAGGACGAAGATGATGTGCCCGTTAAAGACCCGGTGAAATACGGCGAGCTGGTCATATTGGGGTACAATGGCTCGCTGCCCAGTGGAGACcgggggaggaggaagagccgCTTCGCTCTGTACCGGAGGACCAAGGCCAACGGAGTCAAACCCAGCACTGTTCACATCCTCAACACACCACAGGACAGCAAGGCAGTCCACAGCAGGGGGCAGCACAGCATCTCCTTCACTCTGTCCCgcaaccagacagtggtggtggaGTACTGCCACGACAACGACACTGACATGTTTCAGATTGGGCGCTCCACAGAGTGTCCAATAGACTTTGTCGTGACGGACACAtcaggagaggggaaggagtgcGAGGACCCCTCAGTGGCCCCCAGCACCATCTCCCGCTTCGCCTGCAGGGTGGTGTGTGAACGCAACCCCCCCTACACTGCACGCATCTACGCCGCTGGCTTTGACTCCTCCAAAAACATCTTTCTAGGGgaGAAAGCCACTAAGTGGAAGAACCCGGACGGCCACATGGATGGCTTGACCACCAACGGGGTACTGGTGATGCACCCTGAGGGTTTCCCTGAGGACAACAGACAGGGCCTGTGGAGGGAGATTTCTGTTTGTGGGGATGTCTACGCCCTCCGAGAGACACGCTCTGGACCCAGCCGAGGCAAACTGGCGGAGGGAGAAAGCAGTGCCTTGCGGGATGGTTCTCTGGTGGACCTGTGTGGAGCCACTCTGCTGTGGCGTACTGGGGAGGGCCTGCTCCACGCTCCCACCCTCCGCCACCTGGAGGCACTGCGACAGGAGCTCAACGCTGGCCGGCCACAGTGTCCTGTAGGCCTCAGTACTCTGGCATTCCCTAGCCTGCCACGCAGCCACAGTCTGGAGGAGCGCCAGCCCTGGGTTTACCTCACCTGCGGACACGTGCACGGCCGCCACGACTGGGGCCAGCGCCCCGAGCGCCAGgaggcgagaggaggagagggggaaggggcgATCTCCACAGTCCGCCGGGAGTGCCCTCTATGCAGGAGCGTGGGGCCCTACGTACCCCTGTGGCTGGGGTGTGAGCCCGCCGTGTACGTGGATGCTGGAGCACCTACGTACGCGTTTGTACCCTGCGGCCACGTGTGTTCAGAGAGGACAGCCAAGTACTGGGCGGATACCCCGCTGCCCCATGGGACCCACGCCTTCCGGCCCACCTGTCCCTTCTGCTCTGCCCCTCTCAGCAGCACCCCACAGGGCTGGACACGCCTCATCTTCCAGGGCCCCATCGACTAGCCAGGGCCCCCACGGATGCATTCCACAACTACTACGCAACAGTGGAACCAACAAAGTCACTAAGCCAAAGGCCCAATCCTAACTTGAGATAATTGTGTATAACTAATATGAATATTTCTCCAATTTACACTACATCCATGGTGATGTTAGACAAGTGTGTGTACCTCAAACAtttgtgtaataatgtgttaatGTCATTTTAGGATCTGTGCTGTAGTTTGCATTGGGCACATTTCTCTCAAGTTAAGATTTGGCCATAACAGAATCTCCCTTCAAAAGCAATAAGAACACCACTATAGCGAAGCATAGTTTTTAGATAACCTAGTTTTTTGGCTAGTCATCCATGTCTCCAATTCTGTCTCTCTTCAGACATGGCTGAATGTTGTCTGCAGCTCAAGGGCTAAACCTGAGGTGTGTTGAAGTCACTGGATGTTCATGATTGCTGGTTTCCTGACAAAATCATCTCAGCCCAATTTTGAACCAATAATGTAAGGATGCTACTCCAGTGTTTGCGTGAATATTCCCTTTGACAAATATGAATTATCTGGAAAACATAACATTGTAATATTTTGCGAAGCGGTTCAACCCCACAGTACCAGTAACGTATTCTACAGTTGCAAATATAAGTGATGTTAGTGAACATTCTGCAGTTTGACCACACCTCAGGTTTGtgaccaaacagacagacaggcccgtGTCATGAGACATAGCAGAAAGGTCAGAAAGCGTGACATAAAGTAACCTCATaagacatttttttttcaaaGAAAATA

Function

GO: NA

KEGG:

id description
K11964 PELI; pellino

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU797109 lncRNA upstream 55762 35306934 ~ 35312941 (+) False G700559
TU797111 lncRNA upstream 56681 35311034 ~ 35312022 (+) True G700559
TU797110 lncRNA upstream 56868 35311034 ~ 35311835 (+) False G700559
TU797041 lncRNA upstream 65389 35224258 ~ 35303314 (+) False G700492
TU797042 lncRNA upstream 65684 35302024 ~ 35303019 (+) True G700492
TU797164 lncRNA downstream 44967 35430904 ~ 35431123 (+) True G700609
TU797172 lncRNA downstream 65481 35451418 ~ 35451621 (+) True G700617
TU797224 lncRNA downstream 167185 35553122 ~ 35608232 (+) False G700651
TU797223 lncRNA downstream 167291 35553228 ~ 35608232 (+) False G700651
TU797222 lncRNA downstream 167338 35553275 ~ 35608232 (+) True G700651
XM_021612456.2 mRNA upstream 28580 35336979 ~ 35340123 (+) False LOC110529852
XM_021612454.2 mRNA upstream 28580 35337000 ~ 35340123 (+) False LOC110529852
XM_021612455.2 mRNA upstream 28580 35337001 ~ 35340123 (+) True LOC110529852
NM_001246329.2 mRNA upstream 50243 35295027 ~ 35318460 (+) True LOC100653435
XM_036985374.1 mRNA upstream 204843 34799315 ~ 35163860 (+) True LOC110529233
XM_021612463.2 mRNA downstream 68500 35454437 ~ 35462086 (+) False LOC110529856
XM_021612464.2 mRNA downstream 88555 35474492 ~ 35484606 (+) True LOC110529857
XM_021612465.2 mRNA downstream 103317 35489254 ~ 35502659 (+) True LOC110529858
XM_021612468.2 mRNA downstream 116929 35502866 ~ 35505831 (+) False cipcb
XM_021612469.2 mRNA downstream 116929 35502866 ~ 35505831 (+) True cipcb
TU796067 other upstream 1240402 34127593 ~ 34128301 (+) True G699605
TU790056 other upstream 5575956 29790997 ~ 29792747 (+) True G694036
TU789468 other upstream 6430430 28930760 ~ 28938273 (+) False cdca4
TU789469 other upstream 6430430 28935489 ~ 28938273 (+) True cdca4
TU789102 other upstream 6662951 28704850 ~ 28705752 (+) True G693207
TU797136 other downstream 68911 35454848 ~ 35462040 (+) True LOC110529856
TU797266 other downstream 227227 35613164 ~ 35614666 (+) True G700685
TU797474 other downstream 518112 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 1314501 36700438 ~ 36700739 (+) True G702415
TU799461 other downstream 1672408 37058345 ~ 37059223 (+) False G702687

Expression Profile