RNA id: TU797136


Basic Information

Item Value
RNA id TU797136
length 3049
RNA type TUCP
GC content 0.44
exon number 2
gene id LOC110529856
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 35454437 ~ 35462086 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CATGCTATCCCATGCTAACCCGGCTGCGCTACACCTCAAAACGCAAGCCCTGCAAGAACAGAAAATTAACGGCTTGGTCTGTCCGTCGGAAAATCGACCCAAAAATCTGAGAACGGCCACGGAGTACTGTGACAACCGCAGTTTTGGAGACGACCCGAGCGACAAAAACAATAGCGACCATTGCTGCCAACATGAGGACCACAGTCCGTGTTCGAAAGGCAGCCACCCTCACTTGAACAACAGTAGTATGAACGGTATGCTGACTATCACAAGAACTGAGGCTATTTTGAGATTGGGCCTTTTTGCAGATCAAAGCAAATTTTCACCAAATGCACTTCCAGCCACTGGAACACTGCTGAATAACCTTTAGAAGGAGAGAATTCGGTTTTAATTCAAAATAGTTATTGAGAAAGGCGTCGTTGTAGGTGTGGGAGGGGAAACTATTCCATTATTGCAGTTTGTTCATTCAGATTTCTCCTAATTTGTAGACTCTCGTTCCCAAGTACCACTCTGTCTTTCAATTTATCTTCGTCACAGTTGTCTGTCTGAATGAACCCCATCCAGAGCACTCGagtcctgtttcagcatggcaaagTGTCTGGCTGGAATAGTAATATTAAAAATGCTGGACCCCTGTTGGCTTCGCTGTGTGTTTTGAGTACGCTCATCTTTGGTTCACCTCTGGTAAAAGAGGGCAGAAGTATTGTTATCAGTTTTCCTATCAGCAACTTGCTTTCTGAGTTTGTTTAGATTCCTTACTATACGCTCTTACACTCGCTCACTTTCCCTTTTTGTCCGAGCCTTGTGTGCACTTCCCAGGGACCCTACTCTGATGCAGATCACTCCCCAGTAACATTTTAGATCTCCACTGTCCTGGGAATGACTAACGCACCAGGTGTTTTCTATCCACTCTAATTATGGCGAAGAAAATATGCATTTGTGGCTGCtttaaaaaattgaaaaaaataaatatatatacattgttttttttcttcccagaGTAAATGAACAAAGGTCAGATGCACTTTGTTTGGCTATTGCTGcagtgagcatgtgtgtgtgtgaaagaggtACGCGTGTTTTGACAGAGTGGTATGGAATCGGTTCTGTTCAGACTCCCACTTCGCCCATTCCCATTTAagtcctctacagtatagtgAAGACATGGATCCCGGGAGCTATAGTACTGAGCAGCAGTAAGAACTGAAGAGCTGAATCACGTCCTAGCAGAGACACTACTGTTCTGTACCGCTGAGCTGTGATTGCTGTCACAAAGGCCAAGAGGGAGCAGCTATCTAGTATCTACCCATGATGTGTTCTATGGTATACATTGACATACACAAGTCATTTTGGGCCAGGTTTACTCAGTGTTTGCATCTGCTATTTTACATCTGGTATAAAAACATGCAAACAGTTAGGAACTGTTACCTGAGGTCTTTGTCGAAATAGGCCGTTCTGCTATTCAACTGGCTACGATTGCAGAATGGGAAGTAGGAGCGGATGTAAACCGACGGACTAACCACCCACACATCAGCTTGTGTGTGTTACAAAATACGgatcagattattattatttttttttccaTTGCAGATTTATATACGAGTGTTGGTTCTCTATTGATTTGACATTTGAGAGCAACTTTTTGTGAATTGTGTTTTTTGAGGGATTGATTGACCGGGTTTTCTGTTTCTTTTTCTCTGCTCATTTATTTTGACCGATCCAGCGGTGTATATTGAACAGCGATGACGTTATTAGAGATCCAGAAGCACAGATGGGGAGCCAGGTTAACCGTTCCCGAGCGAAACTGTTTCGAACTGTTCCCATGGCACTCTGTTCCATTCACTGGGAAGACTTCCATTTGGCTCCCTGTGTAGAATCTGGACTCTTTCTGACATCACTCTGATCCTGTTTTATTCTAGAGGTGTGAGgctctctcctgtcctattttcAAATGAAATGGGTCTTTTTAATTTGGTCCGACCCTCGCTCCTCATTCTCATGGAACGGGTCTTTTATTTACCCCCTACTTTTTTAACATTGTTAACCCCTGGCAGTGCCAGTAGGAACCGTGAGCATTCTAGTATTCCATGATAGACCAGACCGCTCCACTTTGACCATCAACACCAGAGGTCTGTTCAGGAGGGTGCCCTTTTTTACAGAAAGCTCATATATAAATGTTTTGTCTAGAACCAATCTGATTCTCGGTCTTGTAGAATTGGGAATTGTGTCAGCTCTATTCACTACATTTCTAGCTGCAATGTTCTGAATGTTGCACCTCATTGAATGAACTCCAGTTGAAGGGCTTCCTCAGCAGTCTGTCATTGGTCATTTCTATAGTCCTTCGTATATCTATTTAATGTACATCTAATGCTCTGGTCTGTTTCTACAAAGGAGTGGTCTAAAGAAGAAACAGCCGCTTCCAGATTAGCTGATAACTTCCCATCCCTTATGGCTTTATATGAAATCAATAAATGGTTTTCACTCCAGAGAAATCAAGTTGATTTCACAAAGGCCCCTTAACTGGTCCTGGAGGACCAGCGTCCCACCGGTTGCCAAGCTACCCTTCATCCCAGAGCccacccactcctctcccatctcattGGATGAGAGTTGTCAAGTTTTTTTTGTTTATTGGATGTTCCACTCTGTTTTTATCCGCAGCAACTGGCCTGTTGATAAGATAGGCCACGTAGGACTGGAGTTGAGCTGCTCCTTTTGCTAGAATTTCCCTTTAGGCACACctatctaggatcagcttaccctttCCAAATCCTAACCTTCACCATTAGGGACGGGGGATGCAAACTGACCTTAGCTCAGTGGGCATATATTCTAGGCACCCCCACACACTGTGCCCCTGCAGGACCAGCTAAAGGGGGGCAACATTTGTTGTTTTGGGGTGACCAGCCCTGGCCCCCTCTGATCTGTAAGATGTGCTaagggacatttttttttttgtttttttttttgcatttgagTTCTGTTCCTTCTTCCCCTGTCACCTCTTTTTATTTCTGAAAGTGTCCGATATCTTTTTatttaaatgtgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU797172 lncRNA upstream 3227 35451418 ~ 35451621 (+) True G700617
TU797164 lncRNA upstream 23725 35430904 ~ 35431123 (+) True G700609
TU797109 lncRNA upstream 141907 35306934 ~ 35312941 (+) False G700559
TU797111 lncRNA upstream 142826 35311034 ~ 35312022 (+) True G700559
TU797110 lncRNA upstream 143013 35311034 ~ 35311835 (+) False G700559
TU797224 lncRNA downstream 91082 35553122 ~ 35608232 (+) False G700651
TU797223 lncRNA downstream 91188 35553228 ~ 35608232 (+) False G700651
TU797222 lncRNA downstream 91235 35553275 ~ 35608232 (+) True G700651
TU797246 lncRNA downstream 127671 35589711 ~ 35640025 (+) True G700667
TU797268 lncRNA downstream 151404 35613444 ~ 35618274 (+) True G700687
XM_021612457.2 mRNA upstream 68911 35368702 ~ 35385937 (+) False LOC110529853
XM_021612458.2 mRNA upstream 68911 35368703 ~ 35385937 (+) True LOC110529853
XM_021612456.2 mRNA upstream 114725 35336979 ~ 35340123 (+) False LOC110529852
XM_021612454.2 mRNA upstream 114725 35337000 ~ 35340123 (+) False LOC110529852
XM_021612455.2 mRNA upstream 114725 35337001 ~ 35340123 (+) True LOC110529852
XM_021612464.2 mRNA downstream 12452 35474492 ~ 35484606 (+) True LOC110529857
XM_021612465.2 mRNA downstream 27214 35489254 ~ 35502659 (+) True LOC110529858
XM_021612468.2 mRNA downstream 40826 35502866 ~ 35505831 (+) False cipcb
XM_021612469.2 mRNA downstream 40826 35502866 ~ 35505831 (+) True cipcb
XM_021612472.2 mRNA downstream 52894 35514934 ~ 35538337 (+) False znf410
TU796067 other upstream 1326547 34127593 ~ 34128301 (+) True G699605
TU790056 other upstream 5662101 29790997 ~ 29792747 (+) True G694036
TU789468 other upstream 6516575 28930760 ~ 28938273 (+) False cdca4
TU789469 other upstream 6516575 28935489 ~ 28938273 (+) True cdca4
TU789102 other upstream 6749096 28704850 ~ 28705752 (+) True G693207
TU797266 other downstream 151124 35613164 ~ 35614666 (+) True G700685
TU797474 other downstream 442009 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 1238398 36700438 ~ 36700739 (+) True G702415
TU799461 other downstream 1596305 37058345 ~ 37059223 (+) False G702687
TU799594 other downstream 1786697 37248737 ~ 37249809 (+) True G702817

Expression Profile