RNA id: XM_021612468.2


Basic Information

Item Value
RNA id XM_021612468.2
length 2339
RNA type mRNA
GC content 0.51
exon number 3
gene id cipcb
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 35502866 ~ 35505831 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tacatgtgtcattgttctatctgtggtacAACTCCCATAGTTCACTGTTGAACACAATTTCGTCAGATGGCATACGGGTGAAATATAGTAGTGGGTGGGCTAGACAGCACAAAACATGCTTAGAACACGACGATACAGCCACAAACTTCCAAATATGGATAGGTGAGGTACACAGACTTTAGACGAGAAGATCGTGTCCCATCCGTTTTCTCACTGCCGGGAGAACATTGTTGATCATTCGGAACATTAGCTACTCACTCACTCCCTGTGGTGTTGCTGCACCGTCTCGATCAAGAAAATCGCATCACATCGGATTCTCCTGGAATTCCTCGCTGCATGTGCGCTAGCTGGCAGGAGTGCACCAGAAGCCTAGCCCCGTGTATATGTGTACTACCTTGCCGACTAACGTTACACACTCACACCAGACCGACAGACTGTGGCGGAGAGACTGTGAGCGGACGATAGACCACAAGTTAGGATTGAGCAAGGACACGAAGTTGGGTACATTTGTATCGTTTCAATCATGTCTATGCATTGTTCTGTATTGTAATCGTTGCTAGCTAATACGTCCAAAGGAAAGATGTAACTAGATACGTTGCATTCAGACATGCTAACGTAGTTGGTATAGCTAGCTAGTGGTCTTATGACAATCAAGTAGccaacgttagttagctaacttCAAAATCCAGAAATTGGAGTAGCTAGCAGTTATGCTAAAACTGCAGCTAGCTACTGAACTATAATCCTAGCAGGAGGGACACAGAAACGTCTAGATTCTAACAGAATAGAAAGCGTAGTTCACCCCTAGAACAGTGTTGCACCCCTACAACACGGAAGGAGTTGCAATATATATGTAGTAACGAACCATATAAtaatgcagattttttttttttggggggggggggggtgcatcccAGGTTTCCTATCCATTCTACTACACTGATGTGGGTGTAGTAGTCTGAGTGACTGACAAGACCATTGAAAATAAACTAGATGAGTAGTACCAAGAGGAAAGCAGAAGGGCAATCTAGGACCAGGAAGTCTGGAAGCTCCAGAACAGACTCGGAGAGAGACTCTGGCTTCTCAGATGCCAGCACCATAGACCTGACAGATTCTGAGGACTCATCTCGCACTGTGTCCAAGAGAGAGGCCCAGCGCACTCCATCCGGGTCAGGGTCTCATCCCTCACAGCTAGCTGTGTTGGGGGGGTCCTACTCCAACATGTCCCCCATGATCATGAAAAATGTCCTCCTAAAACAGcctggGAACAACCCTCCCTCTCAGAAGCCATGGGGGTTCAGCCCAGCTGTGGAGATGGTCCAGCAGCCTCAGGTGGACTTCGTCCAGCCCGTTGTCTCCCCTGTGGTCTCCCACTGCACCACATCCAACCCTAAGGAGGCCACTTCCAAACGCCGGCGCCCCAAGAAGTATCTTCCCATCCTCAGGTCCTACCCGAAGATCGCCCCTCACCCTGGAGACAGTTCGAGTTCCTCCGGGGGAGTAAGCTCTTGTTATTTCCCCGCTTCATCCCCCTCTGCCTCTAGCCACCgggaacaccatcacaaccacaGAAACAAACAGCACAGGCACCAGTCTAGAGGTTCTAGCTGTGGTTCTTCTGGTTCCAACACCcccagtctccctcctccctctagctccctgtccccctcttcccagcataggctCACCCCCTCCCTCACAGACTCCAGTGCTTGCAGCAGCCCTGCAAGATCCTCTCTCGTCAGTAGATCAGAGTTCTCCCCAGCCCCGTCCCCTGCCTTAACCGTAACGCCTTCAGACACCCTCACCTCTGAGGTCCCTGAGAAAACCAAGACCCTCTCCCTCCCACAACCCACCATCGCCACAACCAACGACAACAGCTGCCACGATGACAGCAACCACGACCACAATAGCGATGACCATGACATAAAGCGCAAGCGTTTCTGCAACACGTACAACATCCTGTCCAAGTCTGGCCTGCTGGAGATCACCCTGAGTACCAAGGACCTGATTCGTCAGAACCGCAGGACCCAGGTAGACCTGGACCGGCTCAAGGAGCACACCAACCTCTTCCTGCAGGCCCTGCAGACCGGAGATACCAGCATCTGGAGCAAGCTGCAGACCAGCCTCCAGGAAGAGAAGGGCAGTGGGCAGCAGAGCAGCTTAAAGGCAGATACAGATTAGATCTGAACTAAGTAAAAGCAGGGTTTCATCTGTTAGACTGGGCAGAGACTGAGTTGAAGTGGGGGAGGCTGAGGCAGCTAGACTGGCATTACTATGCCCACAATtatcacacagacatacagtgccttgcgaaagtaatcggcccccttgaactt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU797172 lncRNA upstream 51245 35451418 ~ 35451621 (+) True G700617
TU797164 lncRNA upstream 71743 35430904 ~ 35431123 (+) True G700609
TU797109 lncRNA upstream 189925 35306934 ~ 35312941 (+) False G700559
TU797224 lncRNA downstream 47291 35553122 ~ 35608232 (+) False G700651
TU797223 lncRNA downstream 47397 35553228 ~ 35608232 (+) False G700651
TU797222 lncRNA downstream 47444 35553275 ~ 35608232 (+) True G700651
TU797246 lncRNA downstream 83880 35589711 ~ 35640025 (+) True G700667
TU797268 lncRNA downstream 107613 35613444 ~ 35618274 (+) True G700687
XM_021612465.2 mRNA upstream 207 35489254 ~ 35502659 (+) True LOC110529858
XM_021612464.2 mRNA upstream 18260 35474492 ~ 35484606 (+) True LOC110529857
XM_021612463.2 mRNA upstream 40780 35454437 ~ 35462086 (+) False LOC110529856
XM_021612457.2 mRNA upstream 116929 35368702 ~ 35385937 (+) False LOC110529853
XM_021612458.2 mRNA upstream 116929 35368703 ~ 35385937 (+) True LOC110529853
XM_021612472.2 mRNA downstream 9103 35514934 ~ 35538337 (+) False znf410
XM_021612471.2 mRNA downstream 9104 35514935 ~ 35538337 (+) True znf410
XM_021612477.2 mRNA downstream 68475 35574306 ~ 35596403 (+) False LOC110529863
XM_021612478.2 mRNA downstream 68475 35574306 ~ 35596404 (+) False LOC110529863
XM_036985379.1 mRNA downstream 68475 35574306 ~ 35596404 (+) False LOC110529863
TU797136 other upstream 40826 35454848 ~ 35462040 (+) True LOC110529856
TU796067 other upstream 1374565 34127593 ~ 34128301 (+) True G699605
TU790056 other upstream 5710119 29790997 ~ 29792747 (+) True G694036
TU789468 other upstream 6564593 28930760 ~ 28938273 (+) False cdca4
TU797266 other downstream 107333 35613164 ~ 35614666 (+) True G700685
TU797474 other downstream 398218 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 1194607 36700438 ~ 36700739 (+) True G702415
TU799461 other downstream 1552514 37058345 ~ 37059223 (+) False G702687
TU799594 other downstream 1742906 37248737 ~ 37249809 (+) True G702817

Expression Profile