RNA id: XM_036985377.1


Basic Information

Item Value
RNA id XM_036985377.1
length 2609
RNA type mRNA
GC content 0.52
exon number 12
gene id LOC110529862
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 35553221 ~ 35608497 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACTTCATCAACGTATAACTGCTAGATAGCTGACTTTATAAATGGCCAGAGGTGTCTGTGTTTAGGGACTGCGGTGTGTGTACTTTGGGCTGAAAGCAATCACAATCTCTTCTACCATGGCAGGGATTCTAGCGAGATCGTTATGGAGCAAAAAGGCACCACTTCAGATGGGTCTCATGTGttattcatcatcatcagtgCCCACCACCAAGCTGTTCATTGACGGCAAGTTTGTAGAGTCCAGCACCTCAGAATGGCTGGACATTCACAACCCTGCCACTAACGAGGTGGTGGGTCGCGTGCCCAAAGCCACCCAGACAGAGATGTTAGCTGCAGTAGAGTCCTGCTCCAGGGCCTACGCCTCCTGGGCCGAGACCTCCATCCTCACCCGCCAGCAGATCTTCCTCCGATACCAGCAGCTCATCAAGGAAAACATTAAAGAGCTAGCCAGGCTGATCACCCTGGAGCAGGGCAAGACTCTGGCTGACGCGGAGGGAGACGTCTTCAGAGGATTGCAGGTGGCAGAGCACGCCTGCAGCATCACCTCCCTGATGCTGGGGGAGACCCTGCCCTCCATCACCAAAGACATGGATACCTACACCTACCGCCTGCCCATCGGGGTGTGTGCTGGTATCGCCCCCTTCAACTTCCCTGCCATGATCCCTCTGTGGATGTTCCCCATGGGCATGGTGTGTGGCAACACCTACCTGATGAAGCCTTCCGAGCGCGTCCCAGGATGCACCATGCTGCTGGCCAGGCTGCTGCAGGACGCAGGGATGCCCGACGGGACCCTGAACATCATTCATGGACAGCACGCTGCCGTGAACTTCATCTGTGACCACCCTGCCATCAAGGCCATCAGCTTCGTGGGCTCCAACCAGGCAGGAGAGTACATCTACGAGAGAGGATCCAAGAATGGCAAGAGAGTGCAGTCCAACATGGGAGCTAAGAACCACGGTGTGGTGATGCCTGACGCAAACAAGGAGAACACTCTGAACCAGCTGGTGGGCGCAGCCTTTGGCGCTGCAGGACAGCGTTGTATGGCTCTCTCAACCGCCATTCTCGTAGGCGAGGCTCGTGAATGGCTCCCAGAGCTGGTGGAGCGCTCCAAAGCCCTGCGCGTCAATGCAGGTGACCAGCCGGGTGCTGACGTGGGTCCTCTGATCTCCCCTGAAGCCAGGGCCCGTGTTGAAAAGTTGATCCAGAGCGGCGTGGACGAGGGAGCTACGCTGCTGCTGGATGGACGCAATGTCCACGTCAAAGGATACGAGAATGGCAACTTTGTAGGGCCCACCATCATCGGCAATGTCACGCCAGCGATGACGTGCTACACGGAGGAGATATTTGGGCCGGTGCTGGTGGTTCTGGAGGCTGACACTCTGGATGAAGCCATCTCCCTGGTCAACAACAACCAGTACGGCAACGGAACCGCCATCTTCACCACCAACGGCGCCACCGCCCGCAAGTACACACACGAGGTGGATGTCGGACAGATTGGTGTGAACGTGCCCATCCCCGTCCCCCTTCCCATGTTCTCCTTCACCGGCTCCAGAGGTTCATTCAGGGGCGACACCAACTTCTACGGCAAACAGGGCATCCAATTCTACACTCAGGTCAAGACGGTTACATCACAGTGGAAGGCCGACGACGCCACCACGAAGAGCCCAGCCGTTACCATGCCGACCATGGGACGCTAAACGGAACGTTCACTTGTTAATGTGGTGTTCTCTACCTGGCACAACGTTCCACATACTGACTGACATGCGTTAACATTCAGAAGGGGTTAGCAGCCAAGGGGTACGAACAACTGATTCGCTGACAACTGATAAGTCTATTAGAGTCATGGAATATGTTTTATACCGAGTGTACTATATGAGAAACGTTTTTGTATTTGCGTTTGACCCTGTTACTGAAATTGCTTCCGCTAGGGTGATGGCAGATTTTAATCTGaaatgtactgttactgtagcaACAAATCCTCTGTTCAAGCACTAGTCATATGCTGACCCTGGGAGTCACATTGGAAGGATGGACTAGGTGGAATGCAATGGGTGAGAGAAGGCCGGTGGCAgctagtctagtggttagagtgttgggccagtaaccgaaaggttgctggatcgaatccccgagctgacaaggtaagaatctgttGGCTGCCCCTGAGCAggccactgttccctggtaggccgtcattgtaaataagaatttgttcttaactgacttgcctagtttaaaaaggTTACATctgaaaaatattttatttttaaaatctaAGATGTTACTCCGCTTGCATCCTAACTACAACTATTAGGAGGGGAACAGCGAGACCAACGATAAACGGCTTCACCCAGTCCCTTGTGGGCATTAGTGTTCCCAATCTGTGAAACGGagacactagctaggtttccatccaattggcgataGATTGTATGCAAATTTGAGAATATTCGCATCAATGTGAATTTtctcaccagagatgtttccatcacgTTGACTTGTTGCCGATTTTAAAGGCTGTGGGttatgacgtagtgcacataaataAAAACTTTTgcagttaaattcccatgtaccaaatATAAATTAAAAAATACACTGTACATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU798004 lncRNA downstream 50763 35458052 ~ 35502645 (-) True G701362
TU797994 lncRNA downstream 142250 35410941 ~ 35411158 (-) True G701353
TU797914 lncRNA downstream 258072 35289149 ~ 35295336 (-) True G701291
TU797826 lncRNA downstream 365405 35187594 ~ 35188003 (-) True G701204
TU797812 lncRNA downstream 379890 35173298 ~ 35173518 (-) True G701190
TU798043 lncRNA upstream 90671 35660350 ~ 35679252 (-) True G701395
TU798156 lncRNA upstream 152394 35722073 ~ 35722772 (-) True G701486
TU798200 lncRNA upstream 162562 35732241 ~ 35732648 (-) True G701522
TU798211 lncRNA upstream 192029 35761708 ~ 35761938 (-) True G701533
TU798214 lncRNA upstream 196123 35765802 ~ 35766021 (-) True G701536
XM_021612474.2 mRNA downstream 6564 35537689 ~ 35546844 (-) False LOC110529861
XM_021612475.2 mRNA downstream 6564 35537689 ~ 35546844 (-) True LOC110529861
XM_021612473.2 mRNA downstream 8304 35537689 ~ 35545104 (-) False LOC110529861
XM_021612462.2 mRNA downstream 79556 35462273 ~ 35473852 (-) True LOC110529855
XM_021612460.2 mRNA downstream 79557 35462273 ~ 35473851 (-) False LOC110529855
XM_021612484.2 mRNA upstream 58473 35628152 ~ 35632424 (-) False LOC110529864
XM_021612482.2 mRNA upstream 58473 35628152 ~ 35632426 (-) False LOC110529864
XM_021612483.2 mRNA upstream 58473 35628152 ~ 35632428 (-) False LOC110529864
XM_021612481.2 mRNA upstream 58473 35628152 ~ 35632436 (-) False LOC110529864
XR_002474446.2 mRNA upstream 58473 35628152 ~ 35632437 (-) True LOC110529864
TU795985 other downstream 1529523 34023291 ~ 34023885 (-) True ankef1a
TU795919 other downstream 1601052 33943022 ~ 33952356 (-) True G699468
TU794745 other downstream 2563347 32989245 ~ 32990061 (-) True G698356
TU794118 other downstream 3053998 32498799 ~ 32499410 (-) True G697774
TU793920 other downstream 3335859 32214486 ~ 32217549 (-) True LOC110529804
TU798118 other upstream 13319 35582998 ~ 35589877 (-) True G701454
TU798044 other upstream 71676 35641355 ~ 35687636 (-) False LOC110529865
TU798045 other upstream 71676 35641355 ~ 35687465 (-) False LOC110529865
TU798046 other upstream 71676 35641355 ~ 35705313 (-) True LOC110529865
TU798297 other upstream 330944 35900623 ~ 35904272 (-) False G701618

Expression Profile