RNA id: XM_021612480.2


Basic Information

Item Value
RNA id XM_021612480.2
length 5598
RNA type mRNA
GC content 0.49
exon number 6
gene id LOC110529863
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 35574306 ~ 35596404 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcacacacgcacacacacacacacattctcccattacacattctctctctctcacacccacacaccaccaGCCGTCTTTCTTCAGTTCGGGTCACGATCTGGCAGTCGTTCGCCTTGCTTAAGGAGTGTCATAACTTGTCCATTTAACAATTACTCCACAGTCCATTTGTCATCGACTTACTTCGGCCCTCACTGCTAGGGCTACCACTCCCCTCTCACCAGCACCAGCCAGTCAACACGGGACCGAGAGTCAACACATTTCTATAACTGTTACTCAGTCGTGGTTAAAAACGTCCTGTAAAACAAGggcataaacctgttctccaagAAAAGTGGGATTTTTATGTAGCGTGGCGTTCATTGAAATGTCAGACCAGGGAGACAGTGTGTGCTCTTGCTCTCTCTAAAATGATATCACTGTGTTCCCGTTTTTATTGTCGGGCCGCACACTCCTAGGCGGCAACCTTTTCCCTTTAGTCGTCAGGCCGGGATGTGTTTTACAGCTGTCGGATGACAGGTGTTGTCACTATGTTCCCGCCAGGCCTCAGTCTCCGTTAGCGTTCCAACAGAACGTTCCCCCATGGCAGTTTGTCACTCATGTTCCATCTGCAGAATCCTTCCTTCCCTGACACATTCGGAGAATTTCGAGACATTCTTCAAATTCCTCACACTATTTTGACAGTTAAGGTTATTGTTTTACAGATTCTATATCAAAAGCTTGCAGGTGGAAAAAGCTTTTGAAGGTGTACAGAGAGCTTCCAGGCTTTTAGTCGGCTAAAAACGCATTTATACTGACACATTATTCAAGACGCAGAGATATAACCTCAgttatttaaaacatttatttttttattcaaccaggcaagtcagttcagaatcaattcttatttacaatgacagcttaccagggaacagtaggttaaccgCCATGTTCAGgttgcagaacaacagatttttaccgtgtcctctcagggattcaatccagcaaccttgcggcccaacgctctagccactaggctacctgccacccgagGACCAAAGAAAAACCAATGATGACAAAGCAGGTAAAACATTCTGTCTCTAAAGGTTAGGCTTTTGAGTTGTGCTGTTGTTGTGAGATCTTTAGGCGTTGGACATTGCACCTTCCTCTCGTAATCAAGAACCATGAGACACGCATGGTAGATTCATGTTTACTGTACATGTAGCCAATAAGAATGAGTTATATAACTCATTATGAGCAGGTGTAGTTAGGCGAACTCTCTCTGCAACTCCAGCTGCAGTATCCCCCGCTACTCACTAGACTACCCGCGGAGCTCTTTTTCTAAGGTCTAAGGATTCAGAGTAGAATACTTTGCTGTCTCTGGCATTGTTTCTGTCTGGGTGTATGATTGTTTTGTTCTGTTTTgtctgaaccccaggaagagtagctctgGATAAAGTAACAGCTAATGGAAATCCAAATACaattctgtctctctcgtctctactTCGTTGTTTTTGTGTGGGTGTATATGATTGCTTTGTTTTGTGATTTGAGTGGACCCCAGgatccaggaagagtagctgtacCCAAATGAACAAATACAATCTTTTCTCTCCAGTCTCTACTCCAGCGTACGCAGCCATCCTatcaggagaagaaaaaaaacagacctTAGATCAGTCTGGTGAAACTTCATCCAACTGCATGTGTGTTTGCCTGACTGGAAAGCCTGATGGAGACCCTGCTAGTTTACCTGATGGTCGTTGGCATGGCTGTAAAGGCCCACAAGGTCCAGCTGTGCCCAAAACGCTGTGTCTGCCAGATGCTCAACCCCAACCTGGCAACCCTCTGCGACAAGAAGGGCCTCCTCTTCGTCCCGCCAAACATCGACCGGCACACCGTCGAGATGCGTCTGGGCGACAACTTCGTCACGAGCATCAAACAGCGGGACTTTGCCAACATGACCAAGCTTCAGGACCTGACGTTGTCTCGGAACACCATCGGTTCCATCTCGCCTCACGCCTTTAAAGATCTGGAGAACCTCAGGGCCTTGCACTTGGACAGCAACCGTCTGACGAGGCTCACCAACGACACCTTCAGTGGGATGTCCAAACTTCACCATCTCATTCTTAACAACAACCAACTAATTCATATCCACATTGGGGCCTTCAATGATCTCACGGCTCTAGAGGAGTTAGATCTGTCCTACAACAACTTGGAAAGCACCCCCTGGGTGGCCATCCAGAGAATGACCAGCCTCCACACCCTGGGCTTGGACCACAACATGCTTAGCTACATCCCTATAGGAACCTTCTCCGGCCTGCAGAAGCTCAAACGGCTGGACGTCACCTCCAACAAGCTCCAGAAGCTTCCGCCAGACCCTGTGTTCCAGCGGGCTGGGGTTCTGGCCACGTCAGGAAGCATGGGCCCGTCGTCATTCGCGTTGAGTTTTGGGGGGAACCCACTGAGGTGTAACTGTGAGCTGCTGTGGCTGAGGAGGCTGAGGCGGGAGGATGATCTGGAGACGTGTGCAGCTCCGCAGCACCTGGCTGGACGGTACTTCTGGACCGTGTCTGAAGAAGAGTTCCTCTGTGAGCCGCCTCTCATCACCAGACACTCCCAGGAGCTGCGAGCGCTGGAGGGTCAGAGTGTAGCTCTGCGCTGCAAGGCCAGGGGCGACCCAGACCCCATCATCCACTGGATTGCGCCAGACGGCCGGCTCATGTCCAATTCCTCCCGGGCCGTGGTGCACAGTGACGGGACTCTGGACATCCTCATCACCACTGTGAAGGACTCAGGCTCCTTCACCTGTGTCGCCTCCAACCCGGCCGGGGAGGCTCAACAAACTGTGGACCTGGTGATCGTCAAACTCCCACACATCACCAACAGTACTGTGAAGAAGGAACCGAACCCAGGTTCTTCTGATATCGCCACGGTAATGAAGACGGGTGATGGTGGGGAGGGCGGAGGCATGGTGCCACTGGGAAACACGAAGACGAGCCAGGAGAAGAAGGTGGTGATCACTGAGGCAACGTCTACCTCCGTCCTGGTCAGGTTCAACTTCCAGAGGAGTATACCAGGCATCCGAATGTTCCAGATCCAATACAACGGAACCTACGATGACTCTCTGGTTTACAGAATGATCCCTTCGAGCAGTAAGAGTATCCTGGTGAACAACCTGGCGGCCGGTACACAGTACGACCTGTGTGTGCTGGCCATCTACGATGACCTGGTGACCTCCCTGACTGCCACGCGGGTGGTGGGGTGTGTCCGCTTCACCACCGAGCCCCAGTACCTCCGCTGCCACTTCATGCAGTCCCAGTTCTTGGGAGGGACCATCGTGGTCATCATCGGAGGGATCATCGTGGCGTCTGTCTTAGCTTTCATCATCTTCCTCATCGTGAGGTACCGAGTTTGTAACCAAGGCGATGAGGATAAGGCTTTGGAGATGGGTGAGATCCCATCTCTGAGCAGTGACGGTCAGCTCCAGGGCTGCGGTGTCCCCAAGGCCATGTCCAAATCTCTGTCCAAGCAGATCCTCCAGCCAGAGAAACCAGAGACGGAGGACAAGGAGTCTCTGAGGGTGGCCCTTCCTCCTCGCAAACCGgtcaagcagcagcagcagcaaccccCAGCCCCAACCACCACCACATCTACCAAGCCCTCCATCCCCGACTGCACTGTCTCTACTTCCTCAGCCAGCCACTCCTGGCACCCTGCCTCCCCGGTCACCCTGAGGCAAAAACGGGCCGATATCACTGTCGCCGGAGGTTCGAAACCCGGAGAAGCCCGCCGAGCCGAAGGCCAGATGGATGTGGAGTTAGAGAACACAAACCGTAATAACTCGTCAGAAGCCAAAATGGCTGCTGTTCCTGCCCGTTCCACAAAATGGACGCCGGTCGCTAGGCGGCCGCGCCCCCCTGGAGCCTCCTCCCACCATTACATGACGGTACCAGCAGGGGGTGTGAGGGTGAACCGGCGGCACTCACTGAACGTGGACTCGTACAAGGAGCGCTGCTATGTCAGCCTGGTACAGCAGCAGCCAAAACCTGGCGGGAGTTTGTGCTCCAAACGCAGTCTGTCCATGAGTGGAGAATTGCCCACGTTGGAGAGTGCAATGGCAAACATACGCAGAGGCAGAGACAAGCTGTCCCGATCTGAGTGGCTTCTTGAAAGCACTCTATGATCTGGATTTTACTGGCTTATAGGCTCTTTGTTTTACTGGATTGGATTTGTGGCCCGTCGTGGAGCATACAATAACTTTATGCCTTGTCTTTTATCTACAAGACCCATAGATTCCTCTTGTGTATCTGAAGACAAGGCAGCAAAACAGGGTTTTAAAAATGTTTCACATTTGTTTTTCTACCTAAAAAGCAAATATCCTCTCAAAGTCATCTGTATAGCGACTTCGGATATAACTTTGATGAAAGGCACAAAGAAAATGTATAAAGCAACTTCATGTACAAAAATGTTGAGTTGTGTAACATATAGGCTAACACGATACCCGTAAGTGTTCATATAGTACTGAATGCAGTATTCTTGGAGGTCTAGCATCATTTAGAGAGAGGGTGAAAAAGGGATGGATGATCAAGCTTGTTATAACATTGCCTGTTACTTAAAGTGATTACAATAACTGTGTAGACAATGAATGGACATATTTCTTGTCGTCAGTTTTTCAGACAGTTGGTGACATGTCTCAATTAACTTGGCGGCGGTGTTTGGAGGAATTGTGAATGTGCCGAGATGTAGAACACAAGGTAtccaggctgtgtcccaaatggcgcccgATTCTCTTATAGTGCTCaaccttttgaccagggctctggtcgaaagtagtgcactatatagagaatagggtgccatttggtccgCACTCCTCAGTCTAGTGACAGAGCTGGATCTTTTCATCAGGCCGCACCAGACACACAGCACAATGCAGCATTCATGGCAACCCGTCGGTGTTGATTGAGCCTAATACTGCCCTCCGGGTTGAATCGATACATTTTTATCACGTAATTACACCTAAAGACTCACGCTCATAGGATTCCTGTCGCAACTGACATGACAGTCTAAACCAACGCAGACAGGATGACTGGGGCGATTCCAATACGTCAACAGGTGGATGAGGCTCGATAAAGGATTGGTGGtccattttcatgttttttttactaTTATTAAGACATCATTTGTCATGTCAGGCCAAGAACCGTTGTAAATTGACTGGTTGGTAAAAGAGAAAACGAAAGCCACAAAACAGTAGTCTATCTGAGAAGTCGGCTCTTGATTTTGCTGTTGTTTCTGTTTGATGTTTACCAGTATAAATAAACCAATGAGAAAAATCTATCtaatgtagaaaatacctgtaCAGTTATTGCTTGTGACATCCATTTGCCAGGTCTCTACTGTAGCTTTCTTAAGTCCTATCACATGAAATGCAACACTGAGGACACAGCAGAAGTCATTTCAGTTTCAGCTCCATTTTCCAGGCACCGTCTGACACTAACCCTTCTGAAGTCTGACAACATAACATGCAGAGGGATACCTAGCCCACATTTTGGTAGATAGAATCTATCTCAAACTACCTTCAATCTTGAGTCATGACTGACAAAAGAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU797172 lncRNA upstream 126969 35451418 ~ 35451621 (+) True G700617
TU797164 lncRNA upstream 147467 35430904 ~ 35431123 (+) True G700609
TU797109 lncRNA upstream 265649 35306934 ~ 35312941 (+) False G700559
TU797268 lncRNA downstream 17040 35613444 ~ 35618274 (+) True G700687
TU797292 lncRNA downstream 56634 35653038 ~ 35655716 (+) False G700707
TU797293 lncRNA downstream 56634 35653038 ~ 35655716 (+) False G700707
TU797295 lncRNA downstream 56634 35653038 ~ 35655716 (+) False G700707
TU797296 lncRNA downstream 56634 35653038 ~ 35655716 (+) False G700707
XM_021612472.2 mRNA upstream 40253 35514934 ~ 35538337 (+) False znf410
XM_021612471.2 mRNA upstream 40253 35514935 ~ 35538337 (+) True znf410
XM_021612468.2 mRNA upstream 72759 35502866 ~ 35505831 (+) False cipcb
XM_021612469.2 mRNA upstream 72759 35502866 ~ 35505831 (+) True cipcb
XM_021612465.2 mRNA upstream 75931 35489254 ~ 35502659 (+) True LOC110529858
XM_036985394.1 mRNA downstream 258556 35854960 ~ 35891416 (+) False LOC110529234
XM_036985391.1 mRNA downstream 258564 35854968 ~ 35901652 (+) False LOC110529234
XR_005052867.1 mRNA downstream 258565 35854969 ~ 35900757 (+) False LOC110529234
XR_005052866.1 mRNA downstream 258566 35854970 ~ 35900968 (+) False LOC110529234
XM_036985393.1 mRNA downstream 258568 35854972 ~ 35901652 (+) False LOC110529234
TU797136 other upstream 116550 35454848 ~ 35462040 (+) True LOC110529856
TU796067 other upstream 1450289 34127593 ~ 34128301 (+) True G699605
TU790056 other upstream 5785843 29790997 ~ 29792747 (+) True G694036
TU789468 other upstream 6640317 28930760 ~ 28938273 (+) False cdca4
TU797266 other downstream 16760 35613164 ~ 35614666 (+) True G700685
TU797474 other downstream 307645 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 1104034 36700438 ~ 36700739 (+) True G702415
TU799461 other downstream 1461941 37058345 ~ 37059223 (+) False G702687
TU799594 other downstream 1652333 37248737 ~ 37249809 (+) True G702817

Expression Profile