RNA id: XM_021612484.2


Basic Information

Item Value
RNA id XM_021612484.2
length 2211
RNA type mRNA
GC content 0.48
exon number 5
gene id LOC110529864
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 35628152 ~ 35632437 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tagggcATAGTGGCGACGGGAATTGGTGGTGTGGGACGGAATTGAGTTAGACAGCTATTTGCGTTAtcgtagagagagagaaccggaACAGGGGGTGTGTTTGTTGGGCAAACGAACACAGCACAGGGTGCGTGAGAAGCAAGCTGGCGGAATTCAACATGGCATCCGGCGATACGCTGTATATTGAGGCGGACGGCTCGGAGATGCCGGCCGAAATAGTGGAGTTGCACGAGATAGAGGTGGAAACGATACCAGTGGAGACTATAGAGACTACGGTGGTCGGGGAAGAAGACGACGACGACGATGATGATGACCAGCCGATGATAGCACTTCAGCCGCTGGTATCAGACGACCCGAATTCgatccaccaccaccatcaagaAGTGATCCTAGTGCAGACAAGAGAGGAGGTTGTTGGCGGGGATGATTCGGATATGCATGCGGACGGGAGTTACGAGGATCAAATCCTCATCCCCGTCCCAGCACCCGGCGTCGAAGACGAGTACATCGAACAGACTCTGGTGACTGTTGCCGGGAAAAGCTCGGTGGGTCGgatgaagagagggggaggcGGCAGTGGCAAGAAAGCGGGGAAAAAGAGCTATTTGGGTGCTGCAGAAGcaagcggtagaaaatgggaacAGAAGCAGGTGCAAATAAAGACTCTGGAGGGGGAATTCTCTGTTACAATGTGGGCTTCGGACATCGACCATGAGTCGGTTGTTGAAGAACAGATCATTGGTGACAATTCCCCTCCGGACTACTCTGAATACATGACTGGGAAGAAGCTGCCCCCTGGAGGGATACCTGGCATCGACCTGTCAGACCCCAAACAGCTGGCAGAGTTCGCCAGGATGAAGCCGAGGAAGATAAAAGAAGATGACGCTCCTAGGACGATAGCCTGCCCTCATAAAGGCTGTACTAAGATGTTCAGGGACAACTCGGCGATGAGGAAGCATCTCCACACCCACGGGCCTCGCGTGCACGTCTGTGCCGAGTGTGGCAAGGCCTTCGTAGAGAGCTCTAAACTCAAACGCCACCAACTcgttcacacaggggagaaacccttccAGTGTACTTTTGAGGGCTGTGGGAAGAGGTTTTCTCTGGACTTTAACCTGCGCACACACGTTCGTATCCACACCGGAGACCGGCCCTACGTATGCCCCTTCGACGGCTGCAATAAGAAGTTTGCCCAGTCAACCAACCTCAAGTCTCACATCCTCACACACGCCAAAGCTAAAAACAACCAATGAGAGCCCTCCGACCTGCCCCAAATCCCACCCCCACAGCAGCATCTTAATGACACCACACGTCAACTTCCTTTGAGGAAAGAAACaaatgggtggggggggggagaagaataAAGACTAAAGAAATTCAGAAGGTACTGAAATtccccccccctcttcttctcctattGGATAGGCTGACTAAAGTACAGCGGCACTCTTGGAAAAATAATAAAccctcctcccacccccctctctctcctcccttcatagTGGCATCGTGTTGTTGCCAGAAATATGGAACTCGTGGACAAACATCAGAGACTATTCTTTCTACAATGGAGctgcgagagggagggagcaatCTGTTTGTTTTCCCACTTTAAATGAATTTCCACTGACCGGTCTTCATATCTACTGCATAGCTTTTAATTTTCTATTTCTCCAAGTGTGCATATTGTACACTTATTTTGGGATATGTTCAGTAAGACAATTTGTGATTATTATTGAGATCCGCTTACCATATGATAGTCCCTCAGACAAGACTTACTGTACCATCACATAGCTTCAAATAGTATTTTCTGTAAAAAGTTTTGGTTTGCATATTCATCCCTACTTTTGGTTGTATTCCTTCTaaccattaaaaaaaatattgtatacCTGTATTGTATGGCTGTATTGAAATGATGTAGACCTTGATAGAGGTGTGATTTAAAAGTGTTAACCAATTTAACTTTTAGTCATGAGTTGCTTTCTTTTATATGGATTGTCCCCTTGCAGAGAAACGTGTCCCTACCGTTGATTCACTGCGAGCCTGTCTCTGTTGGAATACTGAAACACATCAAATGAAATTGCCAGCGTGACCATCAGTTTCTTTGTTAGAATGTAATGTACAGGCGTCCGTCAACCATGAACTTTCTTTGTTGATATTTACACCCATGTATTTCAATGGCCCACAATAAAACGGTCATCCCAAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU798059 lncRNA downstream 19655 35553221 ~ 35608497 (-) True LOC110529862
TU798004 lncRNA downstream 125507 35458052 ~ 35502645 (-) True G701362
TU797994 lncRNA downstream 216994 35410941 ~ 35411158 (-) True G701353
TU797914 lncRNA downstream 332816 35289149 ~ 35295336 (-) True G701291
TU797826 lncRNA downstream 440149 35187594 ~ 35188003 (-) True G701204
TU798043 lncRNA upstream 27926 35660350 ~ 35679252 (-) True G701395
TU798156 lncRNA upstream 89649 35722073 ~ 35722772 (-) True G701486
TU798200 lncRNA upstream 99817 35732241 ~ 35732648 (-) True G701522
TU798211 lncRNA upstream 129284 35761708 ~ 35761938 (-) True G701533
TU798214 lncRNA upstream 133378 35765802 ~ 35766021 (-) True G701536
XM_036985378.1 mRNA downstream 58345 35553408 ~ 35569807 (-) False LOC110529862
XM_036985377.1 mRNA downstream 58473 35553408 ~ 35569679 (-) False LOC110529862
XM_021612474.2 mRNA downstream 81308 35537689 ~ 35546844 (-) False LOC110529861
XM_021612475.2 mRNA downstream 81308 35537689 ~ 35546844 (-) True LOC110529861
XM_021612473.2 mRNA downstream 83048 35537689 ~ 35545104 (-) False LOC110529861
XM_036985384.1 mRNA upstream 1049 35633473 ~ 35687571 (-) False LOC110529865
XM_036985382.1 mRNA upstream 1049 35633473 ~ 35687573 (-) False LOC110529865
XM_036985383.1 mRNA upstream 1049 35633473 ~ 35687573 (-) False LOC110529865
XM_036985381.1 mRNA upstream 1049 35633473 ~ 35687575 (-) False LOC110529865
XM_036985386.1 mRNA upstream 1049 35633473 ~ 35705333 (-) False LOC110529865
TU798118 other downstream 38275 35582998 ~ 35589877 (-) True G701454
TU795985 other downstream 1604267 34023291 ~ 34023885 (-) True ankef1a
TU795919 other downstream 1675796 33943022 ~ 33952356 (-) True G699468
TU794745 other downstream 2638091 32989245 ~ 32990061 (-) True G698356
TU794118 other downstream 3128742 32498799 ~ 32499410 (-) True G697774
TU798044 other upstream 8931 35641355 ~ 35687636 (-) False LOC110529865
TU798045 other upstream 8931 35641355 ~ 35687465 (-) False LOC110529865
TU798046 other upstream 8931 35641355 ~ 35705313 (-) True LOC110529865
TU798297 other upstream 268199 35900623 ~ 35904272 (-) False G701618
TU798300 other upstream 268199 35900623 ~ 35918175 (-) True G701618

Expression Profile