RNA id: XM_036985386.1


Basic Information

Item Value
RNA id XM_036985386.1
length 2761
RNA type mRNA
GC content 0.48
exon number 13
gene id LOC110529865
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 35633473 ~ 35705333 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctctctctccctatccctcccgcGCGTCCACGCTCCCATTGCTGGAGGAAGGGAAGATGGCACCTCAGAAGCCGCTGTCATCCAGACCGACCAGTCTCTCGTCAGGACAGCTCTCCGTGGCGATCTGAACGATGGCACCGACATCACCGGCACCACCTCGAAAGGGACTAGAGAGATATTCGCTTTAAATAAAAGAGACTAAAAACTGTGGCATCCGTGTGTAGCATTTTCCCCACGCTGTCGCCTTTCCAGCATCTGCTTGCGCTGCACATCCCCGGCAGGCTTCGTACAATCGGCGCCTAGGCTATTATTAATAGCTAGATAATACATCGTAGAACATTCGCATCGCCTATATTCTGGACTGAGAGAATCGTCCGGGAAGGGAAAACGACAATAGGCTACAGGTCGTTCTTCATTTATCACTacggtggagaggagaggaagatgagtgAGCAGAGTATCTGCCAGGCACGAGCCTCTGTCATGGTCTATGATGACGGCAGTAAGAAGTGGGTTCCCATCAAGCCAGGTCAGCAGGGCTTCAGCCGCATCAACATCTACCACAACACTGCCAACAACACCTTCCGTGTGGTGGGAGTAAAGTTACAGGACCAGCAGgtagaggTGGTAATCAACTACTCCATAGTGAAGGGTCTGAAGTATAACCAGGCCACGCCCACCTTCCACCAGTGGCGTGATGCCCGTCAGGTATACGGACTCAACTTCGCCAGCAAGGAGGAGGCTACCACCTTCTCTAATGCCATGCTGTTCGCTCTCAATGTCCTCAGCACTCAGGacggaggcCCAGCGGTCCCGCACCAAGTCCAGAATGGGCCCACTACAGACGAGATGGAGGTGCAGAGAGCAAGGCAGATGATGGAGCAACAGCAGATGCAGGCCCACATGGAGAGGGAACGACGATCCTCAAACCCAGGCTCTCCTTTCCCGGGCCATCCCGGTGTGCTTTCTGTAGCCCCCCCAGCCCCCATGCCGCCCCCCATGTCCATGGGCTCCTCTTTAGGTGGAGGCCCCCCCTCCCTGGGTGCCCCTATGCCTCCTCCCCCTCCTGGGCCCCCTCCCCCCTCAGCAGGGGCTCCCCCGCCCCCCCTGCCTCCTCCGCTGCCCATGGGTGGAGGGGGACAGGGTGAGGAGGCTCCCGCCCCAACGGGACTTGCCGCCATGATCGCTGGAGCCAAACTGCGCCGCGTCAATAGAcctGAGGACTCTAACTCTTCAGGATCGGGGGCCAAAAACGATGCCAACAGGTCGAGTGGCAGCAGCGGAGGACTGATGGAGGAGATGAATGCTCTGCTGGCGCGGAGAAGGAAAGCAGCATCAGAGAAGCCTGAAGACAGCCAAAACGATGACCCCAACGGATCCCCTTCACCCAGCACCAGGGGTGGACAAAACGCCACAGaTGGAGGGAAGAAGCCATGGGACAGAGCCAACTCTGCCGAGAGGTCATCACTGGTGTCAAGGGTACGGCCTGTGGGGAGTAGCAGCGACACAGACGCCTTAGACTTTGACAGAATGAAGCAGGAAATCTTGGAAGAAGTCGTTCGTGAGTTGCACAAGGTGAAGGATGAGATCATTGATGCCATTAGACAAGAACTGAGCAGAATCAGTACGACATAATCTTTCATGTGACCCCAGCTTTTGGAACCATCGTCCCCCACGCCAACTACTGTTAGGAAGCAAGGAGAGGATCAAAGGCCCGGACTACGACCTTTTATTTATTGTACATTGCTGTGATGTTGTAGCAACGTAACAATGTTGCTGTAAGACTACAGGAATGTTACGTTTGGTTTGGAAGAATAGGACGGATGGACACTCTCACTGCTTTTCTCTGTTTCTTTGGTTTaggttttctctctctttttcccttcgATCTGTCCATCGGTAACCCATGTTTTTGCAGTTCTTTTTCCCAGTCTAAAAGGCAACATTTATTCAATTCAATGAAGTAAcctcttgtttgtttttttagaagtttattgttttgttttaaaaaaaaatgttgtttggGGTTATTATTACTACCATTGTCATTATTATGactattatttttattattgtaGATGTAATGGTGTGAACATGAATCGTAGTAGTTTAAGTGATGGCAATAgtaaaaatgacaaaataatCATGATAATGATAtggatgatgataataataacacATCATTTTATGTCAgccttttatattttatattgtattttttttttccttttggtTTTGTTTTAAAATACAATAATAAGCACATACGGATTTCTTTCTCATGACCTGACCTTGAGATTTTTTGAAGAGTTTTGTATCCTTTTTCGCCAACAcagttgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggaatcacTGACTGAAAGATTTTTAAAAACAGGTCTTTAACCTGAAAGGGAGGGTGGTATATAAACTATTGCTCTTTGGATATTGCAATCTTATGAAAAGGAAAACATCAATACACCAGAGTATTTGTGATGATGTTGTTAAAAATGTTTATTGGCTGCAAGAATAAGTAATGTTCGTTTTATTATTTACTTTTATGACCAAGTGCTTCCTGGTTTAAAATTTTTAAAACGACACACACTACATTAAAAATGaattcaaataaaactgtgaacaATGTCTTGGATACAAGAAGTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU798059 lncRNA downstream 24976 35553221 ~ 35608497 (-) True LOC110529862
TU798004 lncRNA downstream 130828 35458052 ~ 35502645 (-) True G701362
TU797994 lncRNA downstream 222315 35410941 ~ 35411158 (-) True G701353
TU797914 lncRNA downstream 338137 35289149 ~ 35295336 (-) True G701291
TU797826 lncRNA downstream 445470 35187594 ~ 35188003 (-) True G701204
TU798156 lncRNA upstream 16740 35722073 ~ 35722772 (-) True G701486
TU798200 lncRNA upstream 26908 35732241 ~ 35732648 (-) True G701522
TU798211 lncRNA upstream 56375 35761708 ~ 35761938 (-) True G701533
TU798214 lncRNA upstream 60469 35765802 ~ 35766021 (-) True G701536
TU798215 lncRNA upstream 60890 35766223 ~ 35766438 (-) True G701537
XR_002474446.2 mRNA downstream 1036 35628152 ~ 35632437 (-) True LOC110529864
XM_021612481.2 mRNA downstream 1037 35628152 ~ 35632436 (-) False LOC110529864
XM_021612483.2 mRNA downstream 1045 35628152 ~ 35632428 (-) False LOC110529864
XM_021612482.2 mRNA downstream 1047 35628152 ~ 35632426 (-) False LOC110529864
XM_021612484.2 mRNA downstream 1049 35628152 ~ 35632424 (-) False LOC110529864
XM_021612490.2 mRNA upstream 2708 35708041 ~ 35760569 (-) False LOC110529866
XM_021612491.2 mRNA upstream 2708 35708041 ~ 35760569 (-) False LOC110529866
XM_036985387.1 mRNA upstream 2708 35708041 ~ 35798020 (-) False LOC110529866
XM_036985388.1 mRNA upstream 3475 35708808 ~ 35760569 (-) False LOC110529866
XM_021612493.2 mRNA upstream 3501 35708834 ~ 35760569 (-) False LOC110529866
TU798118 other downstream 43596 35582998 ~ 35589877 (-) True G701454
TU795985 other downstream 1609588 34023291 ~ 34023885 (-) True ankef1a
TU795919 other downstream 1681117 33943022 ~ 33952356 (-) True G699468
TU794745 other downstream 2643412 32989245 ~ 32990061 (-) True G698356
TU794118 other downstream 3134063 32498799 ~ 32499410 (-) True G697774
TU798297 other upstream 195290 35900623 ~ 35904272 (-) False G701618
TU798300 other upstream 195290 35900623 ~ 35918175 (-) True G701618
TU800348 other upstream 1649763 37355096 ~ 37361593 (-) True LOC110529880
TU800488 other upstream 1783894 37489227 ~ 37492157 (-) True LOC110530908
TU801610 other upstream 2332392 38037725 ~ 38038346 (-) True G704702

Expression Profile