RNA id: TU798045


Basic Information

Item Value
RNA id TU798045
length 1316
RNA type TUCP
GC content 0.53
exon number 6
gene id LOC110529865
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 35633473 ~ 35705333 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcgtTCAGTGCTCTCAGACTCTGAGGGCTGCTCTATCGCTTTTCATTTATTCCCTTTTTTCTCTGTTCctattttattttctctcttctttttctctcccccACCTCATCTAAAATATCTGCTGTGGCAAAGGATGCGTTGGTGAAAAAGGACCCAAAAGAGTTGTTTTGTTTGCGTCCTTTTCTTTCCTCAAGGCGTTGTCATTGGACGCGTCTTTGTTCTTTCATTTGTATGTATTTATTGTCCTGCTCCATGCGAATTGCTGTGTTGTTACTGGAGAAATAGGTTCGTGTGTCTGTGAGGAGCCAGCAGAGGTGATCGagtgaagagaggggaggaaaggggggtgCTGTGTATTTGGCAGAGAGGGGGAAGCCCGGCTGTATCTCTCCGTTGCTGTGACTGTGAATCCACGGCAACCCCATTAGGTGCGGAGACGCAGAGAGGGAATTACTGGGATGCCATcgctaacctctgacctctatcGTTAACTCACGCCACAGCCTGGACGGACAGACCAGGGGAAAGGAAAGAAGAATCAGAAGAGACACGGAGAAACTAGATAAATCCTTGAATCTTTCCTGTAGCTGGGCTTGTGCTGTGCGTCTGATGTGAGGTAGCTAGCACCATGGATATAAACGTGCAGTCCCACCGGTTCTACTTCCCTCAGATCTACTGTACTGAGGCTGTGCCTGCTGGTGCCCAGGTCCAGGTCACAGCGCAGGAGTTTAAAGTCAGtgAGCAGAGTATCTGCCAGGCACGAGCCTCTGTCATGGTCTATGATGACGGCAGTAAGAAGTGGGTTCCCATCAAGCCAGGTCAGCAGGGCTTCAGCCGCATCAACATCTACCACAACACTGCCAACAACACCTTCCGTGTGGTGGGAGTAAAGTTACAGGACCAGCAGgTGGTAATCAACTACTCCATAGTGAAGGGTCTGAAGTATAACCAGGCCACGCCCACCTTCCACCAGTGGCGTGATGCCCGTCAGGTATACGGACTCAACTTCGCCAGCAAGGAGGAGGCTACCACCTTCTCTAATGCCATGCTGTTCGCTCTCAATGTCCTCAGCACTCAGGacggaggcCCAGCGGTCCCGCACCAAGTCCAGAATGGGCCCACTACAGACGAGATGGAGGTGCAGAGAGCAAGGCAGATGATGGAGCAACAGCAGATGCAGGCCCACATGGAGAGGGAACGACGATCCTCAAACCCAGGCTCTCCTTTCCCGGGCCATCCCGGTGTGCTTTCTGTAGCCCCCCCAGCCCCCATGCCGCCCCCCATGTCCATGGGCTCCTCTTTAGGTGGAGGCCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU798059 lncRNA downstream 32858 35553221 ~ 35608497 (-) True LOC110529862
TU798004 lncRNA downstream 138710 35458052 ~ 35502645 (-) True G701362
TU797994 lncRNA downstream 230197 35410941 ~ 35411158 (-) True G701353
TU797914 lncRNA downstream 346019 35289149 ~ 35295336 (-) True G701291
TU797826 lncRNA downstream 453352 35187594 ~ 35188003 (-) True G701204
TU798156 lncRNA upstream 34608 35722073 ~ 35722772 (-) True G701486
TU798200 lncRNA upstream 44776 35732241 ~ 35732648 (-) True G701522
TU798211 lncRNA upstream 74243 35761708 ~ 35761938 (-) True G701533
TU798214 lncRNA upstream 78337 35765802 ~ 35766021 (-) True G701536
TU798215 lncRNA upstream 78758 35766223 ~ 35766438 (-) True G701537
XR_002474446.2 mRNA downstream 8918 35628152 ~ 35632437 (-) True LOC110529864
XM_021612481.2 mRNA downstream 8919 35628152 ~ 35632436 (-) False LOC110529864
XM_021612483.2 mRNA downstream 8927 35628152 ~ 35632428 (-) False LOC110529864
XM_021612482.2 mRNA downstream 8929 35628152 ~ 35632426 (-) False LOC110529864
XM_021612484.2 mRNA downstream 8931 35628152 ~ 35632424 (-) False LOC110529864
XM_021612490.2 mRNA upstream 20576 35708041 ~ 35760569 (-) False LOC110529866
XM_021612491.2 mRNA upstream 20576 35708041 ~ 35760569 (-) False LOC110529866
XM_036985387.1 mRNA upstream 20576 35708041 ~ 35798020 (-) False LOC110529866
XM_036985388.1 mRNA upstream 21343 35708808 ~ 35760569 (-) False LOC110529866
XM_021612493.2 mRNA upstream 21369 35708834 ~ 35760569 (-) False LOC110529866
TU798118 other downstream 51478 35582998 ~ 35589877 (-) True G701454
TU795985 other downstream 1617470 34023291 ~ 34023885 (-) True ankef1a
TU795919 other downstream 1688999 33943022 ~ 33952356 (-) True G699468
TU794745 other downstream 2651294 32989245 ~ 32990061 (-) True G698356
TU794118 other downstream 3141945 32498799 ~ 32499410 (-) True G697774
TU798297 other upstream 213158 35900623 ~ 35904272 (-) False G701618
TU798300 other upstream 213158 35900623 ~ 35918175 (-) True G701618
TU800348 other upstream 1667631 37355096 ~ 37361593 (-) True LOC110529880
TU800488 other upstream 1801762 37489227 ~ 37492157 (-) True LOC110530908
TU801610 other upstream 2350260 38037725 ~ 38038346 (-) True G704702

Expression Profile