RNA id: XM_021612490.2


Basic Information

Item Value
RNA id XM_021612490.2
length 3553
RNA type mRNA
GC content 0.54
exon number 8
gene id LOC110529866
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 35708041 ~ 35798020 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACATCGCTCCATAGCCCGTGCATTAATCGAGTTGAACCAAGTAATTCGAGCCACTTCGCAAGGGGACGCAAATTCTACAAATATTTAGGTTGTATTCTTGAAATAAACAGCCTGGCGTTTTCGCCATTGGAAGACTGGATGTCAGCGAGGCTTGTCTGCATAGCAAATGGTTAAGATTAAGTTTTCTGCAAATCGGTGAAGCCGAACCAGGAAGAGCAAAGCACATCGCTCAGGCAGCcaccgtcctctctctctcgctttctctctactctcctgctctCCCCCAGTACGGAGATCAGTTCAGCCATCACACCAGTCCATAACTATTTCGACGCATCTCCAGGCACAGTATGACGGAGTGTGCCCAGTGGTGCAGCATGTGATGATCCACGCCCGGAACGAAGGTTCCCTCAGCCAGAGCCGCAGCACAGGTAGGCGGGAACACTGCCCCCATAGGCCACATGGTGAGACCATGGGCGGGGCCTGGCTTGAGCGCACGCTGCGATTCGGCAGGACCTTGAAGAAGTGTAGGACCAAGcgaggaaggggaggggttaaAGAGATGCGGGAGAAGGTGCCGGAACGGAATAGGAGGCGGGGCAGGAAATCATATCCCTTACGAGGAAGGGGAGGGTCTTCGGAGGAAGAGGGACTTAGCTGTCACGTTTTACTCACGCGGTTGGAGGAGGACATCCAGGAGCAGGAGGACACCAATGAGAGGGGGAATGATTCGCCTACCCAACCGCCCGTCAAACCTGAATCCCGGATCAAGAAACTGGGCAAAGGAAAAGGCGAAGCCAAGGGGAAACTCCTGGCGAAGAAGATGATTCCCAAAATGATATCCAAAACCACCAGTGATGTGCAGGAGTCACCGTTGCCAGAGCCGCGTAAGCGACGGCTAGCTTCTCTCAACGCTGAGGCGGTGAACAGTCTGCTGTTGGAGAGACCCAACGAGACCCAGCCGGCTGGAAAACAGGCCAGGAGACAGCAGGAGGAGCCCTCCAGCGATGAGTCAACCCTGGGGACAGATCCAGCTAGTGGCGGGGTGGCCGGAGGTCCTAAAGCTCAAAGAGCCAGCAGCAGCAAGGCCTCCATATTGCACAAGCCTGAACTGTGCCGACGCTCCAAAAAGGCCAAGAAAGTCTCCAAGAAACGGACCAAACCAGATaaaggagagaagaaagagactGCGATGATGACTCTACAGATGTTACACACCCCTGCTCCTCGACGGCTAGCCGGACTCAACGCTGCCGCGCTGCTTAAGTTAACGAGCACCTCCGCAACTAGCAAACAGCGAGTGAAACCAACATCGACTACGACGACCGACTGCAAGACCACGAGCGCCGCATCAGTTGATGTGAAGCAGAAGCAACCGCGACTGAATCTTAAACAGTGTGGCCGCCAGCCTAAGCAGAAGGGAAGGAAGTTGATTCCAGAACAGGGAGGCTGCAAGAAGTCCAACTTTGAGCCCAAAGTGGAGTGGGAGTCTGGAGGTTGCACCCACCGGCTAACCAAACCAGGCTACCAGTCACGCAGCATGCTAGCCTACCCGCTGAAGCCTGTCGTCAAAGAGGAGCAGGTTGAGGCAGAGCTGAGACCGTACTACTGCTGCCCCCCAGAGGGTTCTGTGGAGTACTGCCACCGCCTAGCATTGTTCCTGGGTCAGAAGGCCTATGCTGACTCAGAAGAACAACCTTTAAACGCTGCAATGACCCCTATAAAGCGGGAGTGCCTGGTGACATCGCCCTCCGTGGCCCACCCCCATTCCCATGCAGCCCTGACCCTCAGCCCCCACCCTTGCCTCTGCACCGCCGACCCCGCCTGCTTCTCCAGCTACTACGTCCACATCGCACACCCCGGAGCTCCGTCGACCACCCTCAGCTCGCGACCTCTGAACTTTGGCCCCTCGACAATGTGTCCCGGCATGGTGTCTGGGTCCAAGCTGCTGCGTCCTCCGGTGTCCCATGCCTCGACACTGGCCCATCCTGCTTTCTGTGGCTCAGTGGGCTCGCCCTACTACAGCAAGGCCTGCCATGTCAGCGGCTACACCTACAGAGCCATGCAGCCGGTCAACAACAGGGGGTGCTCTTTCTCCACAGGCTGTTCCGGGTTTACACACGGCATCAAGACAGATGACCGTAGCTCTGCTGCGAGTGGCGTGGACGTGGCGGACCGCCTGACGTACCTGGAGCAGCGGATGCAGATGCAGGAGGATGAGATCCAGCTGCTGAAGATGGCCCTGGCCGACGTCCTCAAGAGACTCAACATCTCAGAGGAACACCAGGCCGCCAACACCAAGAAAGGGCCTGCTGGGAAAGCAGCTAGGCCTGTGTCTCTGGCCCTGCCGTCCAGACCATCAATGAACAGCCCTGCCTCTTTGAAGAAGAGTTACAcaacctccacactgccctctacaTCCACCGCACGGAACTACAGCCCCTTACCACCAGCATCAGCCAAGAGTGGTGTGAAGAGTCCGGTAGGCAGTGTGAAGGAGAGTCCATGTATCTCTAAAACGGCTCGGCCTGGCCCCCGACCTGGCCCCCCAGGGTCCACAGCCCCCGGCAGTAAGAAAGCTGAAAGCAAAACCAAGGAGCCTGCAGCCAGTGTCGGGTCGAGGCAGGTGACGCACTGTAAAGTGACTATGCAGATCTATCTGAACCCCCTAACAAGAAGGACTGGGTCTTCTGAAGCGGCCAAATCAGCCCCCACGGTCCCCAACTCTAGACCCACCAGAACCCCCACCCCTCCTCAGACCAAAGGAGGCCCCCCCACCTCAGACCGAACTAAGCCCGAGACATGCAAAACACCCCCCGCCTTCACCCTCCCCCTGCAGAAAAGCACCAATCAGAATATGTATTCTTCCATGGAAATGTCCAATTACAAAAGCCCCCTCAAATCACCAAGCCAGTACTTCCAAATCTGTTACTAAGGCAATAGGGTAGGGTAGGAGGAGGTAGAGGTTGCTCCTAACCATTGGTCTAGGTTCAGataaaaggttaaggttaggattgggggagggtaatctgattctagatctgtggttaagggCAGCTTTTACGTCAAGCTCTTACAAGTGTAGTGGGCCTGTAAGCGAACTCGGTTTTCACGATGTTTGAAAAATGTTTGCGTTTCTAGCAATGTGAGCGAATTTAGAAGTAGAGGTTGTCTTCAGTAATGTTTGAGATTGACTGATAGTTACAACGTTTTGGTTTTGAGGTGTTTAGTTTCACCAGCAGTAAAGGGAATAGtgagtttgtttgttttgttgcttTTCCTAGCACCATCCGTGACCATAGTCCTCTTACCTTTTTCCCCTGTTTAATTTCTTACATATTTCTGTCTGTCAACTGAAAGCCTGTTTTTTTTCTCCTGATCCTTTCTGTTTTAACGTctccattttgtgtgtgtgctttgtaGTTTTATTTCAGTAAAATATGAATCATCTCCCTGACTTTGGGGATGTATGAGTGAATTCTCTTATTTGGTTTATGAGTGTATTTGTCTTGTCTCTGTTGACAGCCATTAAACATTTCAGTCATCACCTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU798043 lncRNA downstream 28789 35660350 ~ 35679252 (-) True G701395
TU798059 lncRNA downstream 99544 35553221 ~ 35608497 (-) True LOC110529862
TU798004 lncRNA downstream 205396 35458052 ~ 35502645 (-) True G701362
TU797994 lncRNA downstream 296883 35410941 ~ 35411158 (-) True G701353
TU797914 lncRNA downstream 412705 35289149 ~ 35295336 (-) True G701291
TU798211 lncRNA upstream 1139 35761708 ~ 35761938 (-) True G701533
TU798214 lncRNA upstream 5233 35765802 ~ 35766021 (-) True G701536
TU798215 lncRNA upstream 5654 35766223 ~ 35766438 (-) True G701537
TU798216 lncRNA upstream 7606 35768175 ~ 35769213 (-) True G701538
TU798230 lncRNA upstream 38229 35798798 ~ 35799579 (-) True G701552
XM_036985386.1 mRNA downstream 2708 35633473 ~ 35705333 (-) False LOC110529865
XM_036985381.1 mRNA downstream 20466 35633473 ~ 35687575 (-) False LOC110529865
XM_036985382.1 mRNA downstream 20468 35633473 ~ 35687573 (-) False LOC110529865
XM_036985383.1 mRNA downstream 20468 35633473 ~ 35687573 (-) False LOC110529865
XM_036985384.1 mRNA downstream 20470 35633473 ~ 35687571 (-) False LOC110529865
XM_036985395.1 mRNA upstream 141082 35901651 ~ 35906697 (-) False LOC118936680
XM_036985397.1 mRNA upstream 141083 35901652 ~ 35906699 (-) False LOC118936680
XM_036985396.1 mRNA upstream 141083 35901652 ~ 35906701 (-) True LOC118936680
XM_036985398.1 mRNA upstream 155671 35916240 ~ 35919219 (-) False LOC110529868
XM_036985399.1 mRNA upstream 155671 35916240 ~ 35920906 (-) False LOC110529868
TU798046 other downstream 2728 35641355 ~ 35705313 (-) True LOC110529865
TU798044 other downstream 20405 35641355 ~ 35687636 (-) False LOC110529865
TU798045 other downstream 20576 35641355 ~ 35687465 (-) False LOC110529865
TU798118 other downstream 118164 35582998 ~ 35589877 (-) True G701454
TU795985 other downstream 1684156 34023291 ~ 34023885 (-) True ankef1a
TU798297 other upstream 140054 35900623 ~ 35904272 (-) False G701618
TU798300 other upstream 140054 35900623 ~ 35918175 (-) True G701618
TU800348 other upstream 1594527 37355096 ~ 37361593 (-) True LOC110529880
TU800488 other upstream 1728658 37489227 ~ 37492157 (-) True LOC110530908
TU801610 other upstream 2277156 38037725 ~ 38038346 (-) True G704702

Expression Profile