RNA id: XM_036985392.1


Basic Information

Item Value
RNA id XM_036985392.1
length 6339
RNA type mRNA
GC content 0.52
exon number 32
gene id LOC110529234
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 35854960 ~ 35901652 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGACGGATCTAGGATCTGCATATTCTGCTGCCATCCCCACAGCCCATCGGTAGGCGGGGGaacaaaactgaccttagatctaCGTCTACATGGATCTCCTACTGCACTAGAGCGGGGGTTTGCAAACGTTTTTCACTCTGGGGCCCCCAGGGTGAATGCtttgggcacaagcactgttgctttttttgcagttttaaagctaatttttctaatgtgtattcatgtgatatgtGAGTGACCATAAAATGACTATGGGctaaaaaaaaacgaaataaagaaactagctgttatgggctagttgatctggacatttctgacaagttataaatagctctatgCAATTAATACCaggacaagaggaactgatgttATACTAACCAATTTCGAAATTgaaccttgtgcattctactattacaactttcaagagtaagatTAAAGCCAGACTGAGTTCCTTAAAATGTCAATCAAAACGTTTTTTTCGCTGACCCCTTGCGCCCTAGGGTTCGCGCCCCACAGTTTGTGAACCACTGCACTAGAGAAGATAACTAGTTTAGTCGCTAAACATGAGCTAAGCTGACTACAGTACACCCGTCACCGGAGTTTAACGCTACTCTAACCTACTCAAGAGATTAAAGTTGTACACAAGCCTGTGCCCCTAAAGTTTACTCGGCTGCAAAAAAAATATTAGTTGGGGATGCAAGCGCGTTTGTATCCTAAAGAAGGATTTCACGGTTCGAACATCGCATAACTTTTAACATAATACATTTATCGGGATATTTTAGCATCAAGATGGCAGTAGACGGGCACGGGTCAACAATAAAAAGTCGGATAAAGAACATGCTGCGGAGGAATCGGAAGGAAAACCTTGCTGACAAGgTGACTTTGGAGAGGGTCCTGGGAATCACAGCCTCTGGTAACAGTGGTCTGGCCTGTGACCCCCACTCTGGACTTGTGGCCTATCCTGCTGGCTGTGTGGTGGTTCTGCTGAACCCCAAGAAGAACAGACAGCACCACATCCTGAATACATCCAGGAAAACTATCACAGCTCTGTCCTTCTCTTCAGATGGCAAATACTTGGTCACAGGAGAGtcGGGTCACCTGCCTGCGGTGCGTGTGTGGGAGGTGTGTGAGTTTCGGCAGGTGGCGGAGCTGCAGGAACATAAGTATGGCGTATCCTGTGTGGCCTTCTCTCCCAACAGTAAATACATTGTCAGCGTGGGTTACCAGCACGACATGATGGTCCACGTCTGGGCATGGAAGAAGAACACAATAATTGCTGCTAACAAGGTGTCCAGTAAGGTGACAGCAGTGTCCTTCTCTGAGGATAGCTCCTACTTTGTGACAGCAGGGAACAGACACGTCAAGTTCTGGTACCTGGACCACTCCAAATCTATCGAGGCCAGTGCTCCAGTCCCTCTGCTGGGGCGCTCTGGGCTCCTGGGGGAGCTGAGGAACAACTTCTTTTGTGACGTGGCGTGTGGGCGGGGCTCTAAGGCCGAAAGCACCTTCTGTATCACCACCTCCGGCCTGCTCTGTGAGTTCAACCCCAAGAGGATGCTGGACAAGTGGGTGGACTTACGGACCAGTGTGGCCAGGgctctgtgtgtgtcagaggagcTGATCTTCTGTGGCTGTGCTGATGGGATGGTGCGAGCCTTCAGCCCTGCTGACCTGGGGTTCATCTGTACCCTGCCAAGACCACACCACCTTGGCACTGATGTGTCCAGCATCACCCAGGCcagCCACCTGTTCTCCAACAAGATGTCCGCCCGCTACCCTGACTCTGTGGCGGTGACCTATGACCCGGCCAGTCATTGGTTGAGCTGTGTGTATAATGACCACAGCCTGTATGTGTGGGATGTCAGGGACCTCCACAGGGTAGGCAAGGTGCATTCTGCCCTCTACCATGCCGCCTGTGTTTGGGACCTACAGATGGTCCCGGAGGTCCCAGAGTCTGGCCTGTCTTCGGGAGAGTTCCTCAGCTGTTCAGCAGACAACACTGTCCGACTGTGGAGTACAGAGAGGCAGGGACACACACATCCGCAGAATGTTCTCAGTAAGGACTTGCTGAAGGTGCTCTATATGGATGAAAACACCGCCGCCCTGGTGGAAACGGAGGGAAGTGTGTCTGTTAGCACAGagaagacagacggacagacggcaGAGACCAGGACAGGCATTAGGACCATCTGTGTCAGCCCCGATGGGAAACACCTGGCGTCTGGAGACCGCAACGGGATGCTGAGggTTCATGACCTCAGCAGTATGACAGAGATTCAGAAGGTGGAGGCCCATGACTCAGAGATCCTGTGTCTGGAATACTCTAAACCAGAGACGGGTCTGAAGCTGTTAGCCACCGCGAGCCGCGACCGTCTGATCCACGTCCTGGATGCTGAGAAAGACTACGGCCTAGTCCAGACCCTGGACGAACACTCTTCATCCATCACCGCTGTCCGATTCGCTGCCAATGACAACAaggtgaggatgatcagctgtggAGCAGACAAGAGCATCTACTTCCGTACGGCTCACAGGACAGACGGAGGTACAGAGTTCAGGCGCTCTCACCACGTGGTGAGAAAGACCACTCTGTATGACATGGATGTAGAGCCCAGCTGTAAGTACGCTGCCGTGGGCTGCCAGGACCGATGCATCAGGATCTTCAACATCAGCAATGGGAAGCAGAAGACATTCTACAAGGGTTCACAGACTGAGGATGGCAGCCTGCTTAAGGTGCAGACTGATCCGTCTGGTCAGTACGTTGCCACCAGCTGCTCTGATAAGAACATCAGCATCTTTGACTTCcgctctggtgtgtgtgtggccaccATGTTCGGACACTCTGAGATAGTGACTGGGATCAAGTTCACCAACGACTGTAAACATCTGATCTCTGTGTCTGGGGACAGCTGTATCTTCGTGTGGCGTCTGGCTCCAGAGCTCACCATGAGTATGAGAGAACGCCTTTCCCAACTAAGACGAACCCTCCTCACACCCCCCTGCAACACATCCACACTCAGACTAAGCCCCGctccctgtcactcaaggagccaCCGCAGGCGTGAGGTGTACAGTGCACCGGCTCTTGGTCTGATGTCATCAGAGAGTGACCGTGAGGTGGAGGATCCAGAGGAGAGGGACGATCCCTGTGACCTGGAACAGATCACAGTAAACAGTAACACCTCCTCAGGGAGTAGCCATGACGACGACGCAGGTGCCTCGGATGAAGGACAGGACTGGGAATCGAAGAAGgCCCTAGACAGCCCTCTGGCCCCTGAGCCCTCCAGTCGGCCCCGGCGTCGCTGGTCCTGTCGTATGGGTTCTCTGGAACTCATGGTCAAGTCTATGCTGGACCTGAGACAGCTAGAGGCCTTCTCCATCACCGGCTCCTCTCACAAGAAAGGCCCGGCCTCCCGGCTCAAAGCGAGCGACGCAGGGAGCACCTCCAGCCTGCAAGGGGCCTCGGACTTGGAGGAGCGGGTTAAGAGACGTCACTATGCTGCCTGGCTGACCCCCAACTCTGACCTGGGCGCCCAGGGGTCTGATGGACGTGTGCTGTACCCCGAGGGTAGCGATTACGCTGCCAGACGACGGGGCAGTGATTACCTGGTGAAGGAGTCTCCCCGCAGCCTGAGTAGGGGGAACCGTGGGCCGGAGAGCCAGgacagccagagcccagacagtGCCTGTTCTGTGGGCTATGGGAGTAGAGAGCTTACTCCTGACCCGGATCATGGAGACTCTGAGGGCACAGCAGAGCCGCTAAGCTCAGACGAGGACAGTTCTgacctggaggaggaggaagaggaggaggaagaggaggaggaggaggagaggaagatggaagTGTCTAGTATGGATGAGGCGATGAGGAAAGTCTCTGACCCTCTAGAAGATTGTCACCATCAGGCCTTCCTCAGACACCACTTTGAAACACTGGCTGAGCCCAGCAATATGGAAGAGCGCAGCACAGCTCCCAGCGTCAGTATGTCAGCGCGATTCCTGGCCAGAGGCTCCTACAACAGGAGAACCCCTCTGTTTTCCAAGGCCCATGAGAGGGAGCAGGGGCCCTTGGTGTCCAAGGTGAGACCACTGATGGAGGGGGGCCAGGGGAAAGGCCACGAAGACAGGGAGAGGCCCATGACCCCTGCGAGAGGGCAGGAGGGGACAAAACTGGAGGTGTGTGCTCTAGAAAGGGGCACTGTGCTGCGTTCCCACCCCCAGAAGAAGAGGCCTCTTGGGGCTCATCTGTGGAGGATGTCAAGCCCCCTGGCCAGAGCTCCAGCCCTGCTGGACAGAGCAGCTGGACTACAGAAGACCCAGTCTGTACAGAACCTGGCCACAGAGGtccCCCGCTCCCTAAACCCCTCCAATGGTAGAGGAGAGATGTGCCCTCGCCCCCAGCACCTCCCCTTCGATATACACCCTTCCAAAGCCCACTCCTGCCTCcattctccctcctctacctcccctcccccctctcttgtcTCCTGCCTGCCCTCAGAAATCCCCAAGCTCAGATCCCCCTGTGACTACATGAGTCCCACCACCAGCTCCATGGCCAAGAGCAGCCACTCTGCATCCCTGGCAGAGGGCTTCCATCTGGGCTTACTGTCCTGCCATGCTTCCTTAACACCACAAGGCCTGGAGGATGGTAGTGGAGGGAGTAGAAACACACCTAACAGCCCCAAGAGCAGGAAGCCTTTTTGTGGGCTACTGGAGGCTGAACCACCCCGCCTCACTTCCTCCTCTCCTGGTTTCCCctcttcccactctctctgttcccgctcctcttctctctcttccccttctccctgtcctctccctggcccctccctttctcctccatgTGCGACAGTCTCGCCCAATCCCAGCTTGTCCCTGAGCATCCAGCCCTCCCGCATTCCCCTGCCCAGCAAACAGCCACTCAGCCCTCGGAGCAGCCTCTGCCCGGAGACCAAACCGCAACCTGATTGGACTGTTTCCCCGACGAGAGACCTTGCCCTCGGGAAACAACACCAAACCTTCGGTAAACGCCTCTCCCTGACTACGGCCCAGATGCAAGGGCTTCGGGGTAACGTCCAGCTGGTGTCCGTCTCACCTACCTCACTTCCTATAAAGCACTCGGAGAGTGCTCCAGATTTGGAGGAGGCGGTGTGTAGAGAGCCCCTTCTAGTGTCGGTCCAGGCCGACACCTTGACTTTCCACCCCCAGCCAGATCCCCCTGTCACTGTGGAAATCTGTAGACGGGCTGTAGCAGAGCTGCACAACAGTGTGAGGAGAGCCACCCAGCTCTATACCGCGGTGCTGAGCAGTGGGTTAGAGGTCAATGCAGAGCAGCAGGAGATGGAGACGGTTCTGGTTGAGGCCCTGGGAACAGTGAAGACTGAACTAGACTCCCTACCTCACCTTGTACATAGAAGTAAATGGCTCAGGGAGGAGGTAGCAATGAGAGGGGAGGTAGGGGTCAAAGGTGAGGGGGACAGGACATTGGCTCTCCTGCAGCAGTATTCTGAGCTCTTACTAAAGTCAGTGGAGAAGAGACTGGACAACAAGATCTAAAAATGATACATACACAGAAGATGCATTCAAGCAGACATGCATATGAATTAAATGCGTATTACACATATGaaaatacacacagacaggaatcGCTCGGTAATCAACAAATCATAAGGACAATGAGAACCGGACACTTCCTCATAGAGAAgtttaataaaatattaaatagaGTGAAGATGGATAAATGAGTTGTTAAAAATGTcttgtgtgtatttattttatatgACTCAGTACTACTGCAACGTTGAGGAAGAACTTGTAAGCAATCGTTTCACTGTACTTCTTACACCTGCACATAACAAATAAACTGAttagatttgtatttgattttgaatggcTGTAGAGATTAATGAAGGGAGGAATGAAGGAAGGAAAAATTAATTTATTCTGGGACTGCACTGTGGGCAAATATGTCCTGTCCACTATTGAGGGGAGAAAATGACATGGGTTTTCCCTAAGAAAATGGAGTGGCCATAAATCCTTTATGCCGGTTTTATCCTTTTAACTGTGAATTCTCAAACATTTTTAGCTTGCACGGCAAGGGTAGACATGTTTACATTCACTAACTGTGCGATGCCACTGACTTTTCTCAATGATGATCATGTGTCTTACTCCACATGTTTTTGAATCTATGCTTAATGTCTCTATTTCCCCTGGTTTTATTGTGAGTGTTGTGTGAATGTGATTTGTTTGTGTGCATCGAGTTGACTGTCAAACCTGTCTTGATATTGCAGTTGTATGAGAGGTCTGATACAATAAAAATATTTCAAAGATAA

Function

GO: NA

KEGG:

id description
K21763 MAPKBP1; mitogen-activated protein kinase binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU797227 lncRNA upstream 309 35853550 ~ 35854673 (+) False G700652
TU797231 lncRNA upstream 356 35853550 ~ 35854626 (+) True G700652
TU797229 lncRNA upstream 1003 35853550 ~ 35853979 (+) False G700652
TU797437 lncRNA upstream 8680 35845819 ~ 35846302 (+) True G700827
TU797386 lncRNA upstream 86396 35768355 ~ 35768586 (+) True G700778
TU798392 lncRNA downstream 109116 36010768 ~ 36010992 (+) True G701706
TU798394 lncRNA downstream 110864 36012516 ~ 36012817 (+) True G701708
TU798399 lncRNA downstream 121454 36023106 ~ 36023309 (+) True G701713
TU798413 lncRNA downstream 150102 36051754 ~ 36052020 (+) True G701727
TU798324 lncRNA downstream 151291 36052943 ~ 36077605 (+) True G701642
XM_021612478.2 mRNA upstream 258578 35574306 ~ 35596404 (+) False LOC110529863
XM_036985379.1 mRNA upstream 258578 35574306 ~ 35596404 (+) False LOC110529863
XM_021612480.2 mRNA upstream 258578 35578590 ~ 35596404 (+) True LOC110529863
XM_021612477.2 mRNA upstream 258579 35574306 ~ 35596403 (+) False LOC110529863
XM_021612471.2 mRNA upstream 316645 35514935 ~ 35538337 (+) True znf410
XM_021612500.2 mRNA downstream 34755 35936407 ~ 36051280 (+) False LOC110529869
XM_021612501.2 mRNA downstream 69428 35971080 ~ 36051280 (+) False LOC110529869
XM_036985402.1 mRNA downstream 69428 35971080 ~ 36051280 (+) False LOC110529869
XM_036985401.1 mRNA downstream 79265 35980917 ~ 36051280 (+) False LOC110529869
XM_021612504.2 mRNA downstream 87814 35989466 ~ 36051280 (+) True LOC110529869
TU797266 other upstream 240316 35613164 ~ 35614666 (+) True G700685
TU797136 other upstream 392942 35454848 ~ 35462040 (+) True LOC110529856
TU796067 other upstream 1726681 34127593 ~ 34128301 (+) True G699605
TU790056 other upstream 6062235 29790997 ~ 29792747 (+) True G694036
TU789469 other upstream 6916709 28935489 ~ 28938273 (+) True cdca4
TU797474 other downstream 2397 35904049 ~ 35904698 (+) True G700864
TU799161 other downstream 798786 36700438 ~ 36700739 (+) True G702415
TU799461 other downstream 1156693 37058345 ~ 37059223 (+) False G702687
TU799594 other downstream 1347085 37248737 ~ 37249809 (+) True G702817
TU800686 other downstream 1869212 37770864 ~ 37771635 (+) True G703835

Expression Profile