RNA id: XM_036985401.1


Basic Information

Item Value
RNA id XM_036985401.1
length 4235
RNA type mRNA
GC content 0.52
exon number 12
gene id LOC110529869
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 35936407 ~ 36051280 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGATCTGGTTGGCACGGCGGAGGTCCGGACCGGTGAtacggacagacagagaaaacATTTGTTTCCACTAGAAGACAATGTTcctacaggggagagagacaggaagacagggatACAATAAGCTCCTTTCAGACCAAACCAACCGAGTGATGACAACACGGTGGATGACGACATGGTTTGTCCGGGTTTTCCAGCATGTTTGGGAAAAAGAAGAAGAGGCTAGAGATTTCGGCTCCGTCTAACTTCGAGCACCGGGTCCACACTGGTTTCGACGAGCGGGAGCAGAAGTTCACAGGTCTGCCCCAGCAATGGCAGAGTCTCCTGGCAGACACAGCCAACAGACCCAAGCCCATGGTGGACCCCTCCTATATCACACCCATACAGCTGGCTCCTATGAAGATATCTCCCAAGAAAATCCGGTCGGCCGAAACACCCTTGCGAAAAaccaTCGTTCGAGGGAACCGGCCCCCGAAGGACACTTCCATCAATGGTCTCCTGGAGGAGTTCGACAGCATCTCTGTGACACGTTCCAACTCCCTGCGTAAAGAGAGCCCTACGGGCCCCCACCAGGCCGGGTCCGGGGCCCCCAaacccccctcccaccaccctccacacccccaccccaacgcCCCTGAGGAGAACGGCTTCAGCCACTACTACTCCCGCTACTCCTGTGATCTGGACACCTCCAGTAGGGACTTCTCTCTGGAGCCCTACAGGAAGGACGGTAAAGGCTTCGCTCTAGATGGGGACTGGGCCGTGGGGAGACACTACCGCTTCCCCAAACAGAATGGCCACCTCACCCACGCCACCCGCGTTCCCTTCTACCCCGACGCCATGCCTCAGAAGACCGATTACGCCAAGCTGCCTCCGGACTACCATACGTACTTGGAGAGCAAGGTGGCGGGGGCGCGCTTGGCCGACGAGGTGGGATCTGGGTCCGGGGTGGGAAGCGCAGGGGGGTCTGCCGGGTCCACGACAGGGGGGTACTACCGGGCGTCCGTAGGCGGTTCGTCCAGTCAGGACTACCGGGATGCGTCGATGGTGGGGACACCGTCGCGAGCCTCGCTGCACAGCGAGCAAATCAACTACCCAGATAGCGAGTGGAGCTACAGCGGCATGTCCAGAGACGAGTACGAGAAGAGGCCTAAGTCGTCGTACGTGATGCAGACCAGCCCCACGCCGGCCATCCGACAGCGCTCCAGGTCGGGGTCCGGCCTCCAGGAGCCCAACGTGACCTATGGGGCCAGCGGGGCTTTTAAGAGTCCCCCTCAGGCACAACCCTACAGCTCCTACACCTACCCACGCCTCTCAGAGACTCTCACCAACTCACAGGCCATGGCCAAGGGTGATTACGACCAGTCGTCTTGGGACGGGAGTCCCCAGGTCCCAGGGTCTGACACATACCCGCGCGGGCCCCTCAAACTACCTCAAAGCCACAGCAAGCCCTCTGGCTACCCCCCCGGACTGCAGTACCCCCCTGTGTTCCACCACTACAAACCCTCCCCCTACCACCACCCACCCTCACAGCCCAGCCCGCCATACACTCCACAGGGGGCATACTCCCAGCCATCATCCCCTTACATCCCCCCGGGGGCCTACCCCCCTCCATCCTGGGGCTCCAGTTCAGATGCCCAGCCCTCCAGGGTCTCCCACGAACAGTTCAGGGCTGCCTTGCAGCTCGTCGTCAACCCAGGTGATCCCAGGGAGTACCTGGAGAGTTTCATAAAGATTGGCGAGGGCTCGACGGGCATCGTGTGCATCGCCAGCGAGAAGCATAGTGGCAAGCAGGTGGCCGTCAAGAAGATGGACttgaggaaacagcagaggagagaACTGCTCTTCAATGAGGTGGTGATCATGAGGGACTATCACCATGAGAACGTGGTTGACATGTACAACAGCTACCTGGTTGGAGACGAGCTCTGGGTCGTTATGGAGTTCCTGGAGGGCGGGGCCCTGACGGACATTGTCACTCACACGAGgatgaACGAGGAGCAGATAGccaccgtgtgtgtgtctgtgttgaggGCTCTGTCGTACCTCCACACGCAGGGAGTCATCCACAGAGACATCAAGAGTGATTCTATCCTCCTCACCAGCGATGGACGGATCAAGCTGTCAGACTTTGGCTTCTGCGCCCAAGTGTCCAAAGAGGTGCCCAAGAGGAAGTCTCTGGTGGGCACGCCCTACTGGATGGCACCGGAGGTCATCTCACGGTTACCCTACGGCACAGAGGTGGATATCTGGTCGTTGGGCATCATGGTGATAGAGATGATAGATGGGGAACCCCCGTACTTTAACGAACCCCCTCTACAGGCCATGAGGAGGATACGAGACAACCTGCCCCCACGGCTAAAGGAGTCACACAAGGTATCATCGGTTATGAGGGCCTTCCTCGATCTGATGTTAGTTAGAGAGCCGTCTCAGCGAGCCACAGCCCAGGAGCTGCTCCAGCACCCCTTCCTCAAGCTCTCGGGCCCACCATCTTGCATTGTCCCCCTAATGAGGCACTACCGCCACCGCTGACCTGACCTCCCGCCACCAGGGCGGCGCCACACACCCTGCCAAACAAACACCCACATGACCTGAGAGACTACGCCACTAAaacaaacactcacacctgtAACCGAGCAGTAGTTTAGCTAGAGGAATTATTTACAAAGAAAAGATTAAAGAGAAACATGATATCTTCTATTTTGAAAAATACTATATAAAGTTCAACACTGGAGCATAggggactgtactgtaggagtCTCTTCTTCAGTCTTCTGTGGCAGGCTTATTGCTTATACGGGCGCCAAATGCTAACAAATGCGAGCCTCTTGGTTCGTACTCTTTGGCTTCACTAGGCTGCTAGACCAGTAGGGTGGGTCGTCCCAGTGCAGTTTCCTCTCTTACTAGGCTGTCTGTGAGTCCTGTAGAGTTGTACTGTAGTAGCCATCGACTAGAGCGTAGACGGTGTCCAGTGATCAGCTGACCCTGCCTGGCTGGCAGCCGTGTTGAGGGACCTATGAGACACGCCCACCGCCCCCAGACATGAGCATTAGATCTCAGAGCAATCAGGAAGCAGCATTTGGTGTTGACGAGTATTTGGTGATGTCTGAGCGGGGGCGGTGTGGGTGTGTCTTAGTCTGGCTAGAAGACAGGCTGTTCGCCTATTGGTGGAATAAAAACATCGCTCTCTTCACTTCTCTTTTCTCACACTAACagtgaaaatgtattttagagAAATATGTAAGTTTTTCTGTACAGTTTTGATAATTTGCAGTATTTTATTGTGTCGTGACCATTGTGATATGGGCAGTATTACATAGAAATCAGAGTTTCTGCGAAGATCTTTCCTACTGTTTATAATAATAATCCATTTTTTCATTAAGAATTTAACCCCTAACTGTTACAAAAATGAACATGAATATATTTATTATCCCACATTTGTGGACAGAACCTCCATTGAGTGTGGAAAAAGGGTAAAGGCCAGAATTTTGTATGCTGTTttaaagtatttatttatttttttgaattgaAAGGTTTATTTTTTGGTAGTGTGgcctttctttttgttttacgtTTATAAATATCAACAGCCAGACAAACAGTGATGTTGGTTATATCATACAAGCAATACCCCAAGCATatccatcatcaccatcatttattcatctttataaaaaaaatgtcattttttacAAATCCCACGTAGCACTGTTTGAGTGGAAAGATAAGAGAAGATATCAGTTTATTTGTAAAAGAGACATTTATTCTTTACCCATCATGACACTCCTATAAATTCAATGGACACTCATCCAAGACTCCTATAGCAATATCTGAGCTTCTCAGTCTGATACACACAGTGGTAAAAGGTCTGTTTTTCTACTCTCACACATCCTGGCTGTCATCtgttccttatctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctcacacacacacaaacaactgtGCCGCGATCTGATTCTCAGTTCTAATTGGAAAGTGTAACCCCATTTTGTTTTTAACACATCATTCACTGTGAGATGTAAatatgaacgtgtgtgtgtgtttgtgtgtgtgtgtgagagctggtTTCGGGACTTGAATGAGTACTACTATCCGTGGTGTTGCTTGTACAGTGATATTGCATGTTTGTTATCAGTGAAGCTGGTTTCAATTAAAAAAGCCCATTAAAACATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU797227 lncRNA upstream 126244 35853550 ~ 35854673 (+) False G700652
TU797231 lncRNA upstream 126291 35853550 ~ 35854626 (+) True G700652
TU797229 lncRNA upstream 126938 35853550 ~ 35853979 (+) False G700652
TU797437 lncRNA upstream 134615 35845819 ~ 35846302 (+) True G700827
TU797386 lncRNA upstream 212331 35768355 ~ 35768586 (+) True G700778
TU798413 lncRNA downstream 474 36051754 ~ 36052020 (+) True G701727
TU798324 lncRNA downstream 1663 36052943 ~ 36077605 (+) True G701642
TU798526 lncRNA downstream 162385 36213665 ~ 36218202 (+) True G701837
TU798560 lncRNA downstream 213958 36265238 ~ 36266093 (+) True G701862
TU799132 lncRNA downstream 578038 36629318 ~ 36629673 (+) True G702387
XM_036985393.1 mRNA upstream 79265 35854972 ~ 35901652 (+) False LOC110529234
XM_036985390.1 mRNA upstream 79265 35854974 ~ 35901652 (+) False LOC110529234
XM_036985392.1 mRNA upstream 79265 35854982 ~ 35901652 (+) True LOC110529234
XR_005052866.1 mRNA upstream 79949 35854970 ~ 35900968 (+) False LOC110529234
XR_005052867.1 mRNA upstream 80160 35854969 ~ 35900757 (+) False LOC110529234
XR_005052869.1 mRNA downstream 413676 36464956 ~ 36467606 (+) True LOC118965513
XM_036985419.1 mRNA downstream 537360 36588640 ~ 36604558 (+) False fermt1
XM_036985421.1 mRNA downstream 537530 36588810 ~ 36604558 (+) False fermt1
XM_036985416.1 mRNA downstream 537678 36588958 ~ 36604558 (+) False fermt1
XM_036985418.1 mRNA downstream 537678 36588958 ~ 36604558 (+) False fermt1
TU797474 other upstream 76219 35904049 ~ 35904698 (+) True G700864
TU797266 other upstream 366251 35613164 ~ 35614666 (+) True G700685
TU797136 other upstream 518877 35454848 ~ 35462040 (+) True LOC110529856
TU796067 other upstream 1852616 34127593 ~ 34128301 (+) True G699605
TU790056 other upstream 6188170 29790997 ~ 29792747 (+) True G694036
TU799161 other downstream 649158 36700438 ~ 36700739 (+) True G702415
TU799461 other downstream 1007065 37058345 ~ 37059223 (+) False G702687
TU799594 other downstream 1197457 37248737 ~ 37249809 (+) True G702817
TU800686 other downstream 1719584 37770864 ~ 37771635 (+) True G703835
TU801178 other downstream 2174775 38226055 ~ 38229974 (+) True G704281

Expression Profile