RNA id: XM_036985403.1


Basic Information

Item Value
RNA id XM_036985403.1
length 2362
RNA type mRNA
GC content 0.47
exon number 7
gene id LOC110529870
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 36052936 ~ 36059371 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGCGCGGGTGTCCTCAAGCCTGAgttcacacacactgagctgtgtgtgagagagagcgcgtTGCCAGACTGCAAtccacgcacgcacatacaccaCAGCAGCTGCAATCTTGCTCAGAagcagagaggagggggtagcaaagatcccctcacacacacacacacacacacacctcagctgCAATCACAGTGATGGAAAGAGAAGCATTGCGGGACTAGCTGCGGTTGCTGCAGCGAAGCTCTTTGGAAGAAACAAACTTCGGGAGAGAAACTGAACTTCTTCCCCCGGTGAATCACGCTACCCCGCCAGTCAGCGGTTTCAGTGCCTGGATCCAGTACAATGGAGCGGCTCAGATTCAGCACCTTGGACAGCGCAGGACTTCTGCTACGTTTGTTCGGGATCCTGGCCCGGTTGACCGTGATGGctgagcaagagggagagaatcTCTCCGGTCTGTCCACCAACCCAGACAAAGACATCTTCGTGGTCCGGGAGAACGGGACCACCTGCCTCATGGTCGAGTTCGCTGTCCGCTTCACGGTCCCCTTCGACGTCCTCGCGATCAACGGGATAGACCTCATCACGGAGAATGCGTATCTGTCTCTGCCTCGCGGGGCAGACATTGAAGGGAAATGCGGGAGCCAGGACGCCGATATACACATCTCGTGGAAGGATAAGGCCTACACACTCCGCATCAACTTCGTCAAGGAAACCCGTGACAAGGGAGATGAGGTGTGGAAGATTAGCAAATTGCAGTTTGTTTATGACACCTCGGAGAAAACGCATTTCATCAACCCATACAACCctGGGAAGCACACAGCCAGCTCCCACGGTCTGTCAGCGCTAGTGACCCCTGCTGGCCACTCCTATGTCTGCGAGGCTAAGCAGACACTCACCCTCATCTCCAGTGACCACCAAAAGGGAGTGACTGTCGCCATGAGTGACATTCAGATCCAGCCCTTCGACATCAACTCAGACTTCATGTTTAGTGAAGCCTATAAGTGCATCACGGACCAGCGGGAACAGCTGGAGGAGACTCTTCCTCTGATCCTGGGTTTCATCCTGGGCCTCATCATCGTCATCACGCTGTCCGTCTACCACTTCCACCTCAAACTGACCGCTGTCACCCAGCCACAACTGCCCCGCGACCGGTCCATGTACAAGAACATGTAAGGAACTGGACATTGAAACAAACACTATATGACGACTCTCCATGGTCAAGGATAGTACAGTAGAACAACATTCCAAGACTCCCCATGTTCAAGACCATCTAAGGAATCAAACATTAGATCATCATCAACACAATGACTCTCCATGTACAAGGTAATAGGACACTGAAACAAGCACAACATGATGTTCAAGACATGTAAGGAATCAGACACTACAAATCACTACGACTCTCCATGTTCAAGGATATAGGACATTAAAAACAAGACGACATGACTACTCTCCATTCAAGGATATAAAAAAAATGGTACTAGACTACAATTATAACCACAACGCTCCTGCCTCTCCAAAGTCAAACCAATGTGACTTCCCTTGCTCTGAACTCCCCATATATTGGAGAGTAGGCCATCACTTTATGGAGGCCTAACTTGAGATACGTGTGCGTAATTTGGAGCGTTCTCGTAAAATCCTGCATTGAAGTCCTTTGGAGACTTGCGCAACATTCGATTTACGCacacgttttttttcttcttcagttaGCGTTccaccccagtgtgttctgctgtCCAGAAATcgctgttttttctttttttgttgagagGCCTGCGCTTTTGTCATCATCCCCCCCATCACGTGTCTCTGTCTTTTCTGTCAACGAGCTACAAAAGAAACCTGGCAGGTTAGCAGGTCCAGAGTTGATGTTCAGCTGAAGTTTTTACTTTCCTGACTCCGGTTTTTACTTTTTGTTTTAGAATGCAACCATCGTGGTGAAAGTGGACGgtgttgtggtgtgtatgtaCACTGTGCAGGTGTTTCAATGAACTTCAGAAATCATGCAAAATAAAACATTGCAGGAAACGCTTTACTTTGGTATGAACGGATCATTTTCCAGATCTGACTCGATGGAATTATGTcaagaaaaaaatatgaaacgtaaattgaaaaaaaaagaaggaaaacaTGGTCTGTAAAAacgtgccccccccccaaaaaaaaatatttaatacatttatcTCATATCAGAATGTCAGAAGAAGTTTATCATTGTGTTTATCATTGTGAAAGAAATGTGCAAAGATATTTCAGATTTAAAAAGAATAAATGTACACTATTTTCAGAAAGACTATGCATAGAAAACTATGCTGATGCTACTTTAATGTTCACCGAAATAAATTTTACAGGAGATATCCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU798753 lncRNA downstream 1115 36051514 ~ 36051821 (-) True G702039
TU798740 lncRNA downstream 25480 36027256 ~ 36027456 (-) True G702026
TU798734 lncRNA downstream 32832 36019893 ~ 36020104 (-) True G702020
TU798731 lncRNA downstream 36746 36015875 ~ 36016190 (-) True G702017
TU798728 lncRNA downstream 43080 36009492 ~ 36009856 (-) True G702014
TU798775 lncRNA upstream 41978 36101349 ~ 36102190 (-) True G702056
TU798872 lncRNA upstream 165061 36224432 ~ 36224789 (-) True G702145
TU798889 lncRNA upstream 169804 36229175 ~ 36233884 (-) True G702149
TU798901 lncRNA upstream 199997 36259368 ~ 36259824 (-) True G702161
TU799036 lncRNA upstream 424337 36483708 ~ 36485467 (-) True G702295
XM_036985399.1 mRNA downstream 132030 35916240 ~ 35920906 (-) False LOC110529868
XM_036985400.1 mRNA downstream 132030 35916240 ~ 35920906 (-) True LOC110529868
XM_036985398.1 mRNA downstream 133717 35916240 ~ 35919219 (-) False LOC110529868
XM_036985396.1 mRNA downstream 146235 35901652 ~ 35906701 (-) True LOC118936680
XM_036985397.1 mRNA downstream 146237 35901652 ~ 35906699 (-) False LOC118936680
XM_036985411.1 mRNA upstream 4166 36063537 ~ 36129888 (-) False LOC110529235
XM_036985405.1 mRNA upstream 4166 36063537 ~ 36206480 (-) False LOC110529235
XM_036985406.1 mRNA upstream 4166 36063537 ~ 36206480 (-) False LOC110529235
XM_036985407.1 mRNA upstream 4166 36063537 ~ 36206480 (-) False LOC110529235
XM_036985408.1 mRNA upstream 4166 36063537 ~ 36206480 (-) False LOC110529235
TU798300 other downstream 134761 35900623 ~ 35918175 (-) True G701618
TU798297 other downstream 148664 35900623 ~ 35904272 (-) False G701618
TU798046 other downstream 347623 35641355 ~ 35705313 (-) True LOC110529865
TU798044 other downstream 365300 35641355 ~ 35687636 (-) False LOC110529865
TU800348 other upstream 1295725 37355096 ~ 37361593 (-) True LOC110529880
TU800488 other upstream 1429856 37489227 ~ 37492157 (-) True LOC110530908
TU801610 other upstream 1978354 38037725 ~ 38038346 (-) True G704702
TU801790 other upstream 2254118 38313489 ~ 38313803 (-) True G704874
TU803684 other upstream 3160273 39219644 ~ 39226313 (-) True G706683

Expression Profile