RNA id: XR_005052868.1


Basic Information

Item Value
RNA id XR_005052868.1
length 3511
RNA type mRNA
GC content 0.53
exon number 29
gene id LOC110529236
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 36216234 ~ 36490738 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aAACTGCATCAGCCGTCATCAGCGGACTTCACCCAGTCCCTCAGCTGAGCCTGCTTTCTCGTCCAACTCGCGTCAGGGAGCTTCAAAGCGGAGACCCGCAGCCCCATGCTGGAATGAGATACTGCCAACACTAGTGGAGCTTCCATCAGCCTATCGTTCCTCAGCAGAAGGGTCGTTTCGGAAAGAAAAAGGAGAAAGCGACTTAAAaccgtttattttatttttgtcgGTTGAGGAGAGTAGATGAGTCAATGGCCGGGGCTCAGCCAGGAGTTCATGCGCTGCAGCTCAAGCCGGTGTCCGTGAGCGAGAGCCTGAGAAAGGGCAGCAAATTCATGAAATGGGATGATGACTCCACTACGGTGACCCCTGTGACCTTACGAGTCGACCCCCAGGGCTACTTCCTGTACTGGACTGACCAGAACAAGGACACTGATCTCCTGGACATCGCCTATATCAAGGATGCCAGGAACGGAAAATGCACCAAGACGCCAAAGGACATGAAGCTACGAGAGCTGCTGGACGTCAGCACCCTGGTGGGGAAGATGGAGAACCGGATGCTGACGGTGGTGAGCGGACCAGACATGGTCAACATCACCTACCTCAACTTCATGGCCTTCCAGGAGGAGATCGCCAAGGAGTGGGCTGAAGAGTTGTTTGGCCTGGCGTCTAACCTACTGGCGCAGAACATGTCCAGAGAAGCATGCCTGGAGAAAGCATACACACGGCTGAAGCTACAACTTAACTCAGAGGGATGCATCCCGGTCAAAaaTATCTTCAGGATGTTCTCGGCGGACAGGAAACGAGTGGAGACAGCTCTGGAGAACTGCAACCTCCCTTCTGGACGGagtgaCTCTATCCCTCAAGAGGACTTCACTCCGGAGGTCTACAAAGTGTTCCTCACCAACATATGTCCTCGACCAGAGCTAGACAACATCTTCTCTGACGTTGGAGCTAAAAGCAAACCCTACCTGACAGTGGAGCAGCTGACTGAGTTTATAAACGTCCGACAGAGAGACCCTCGTCTCAACGagatcctctaccctcctctcaaACCGGAACAGGTTCAGAGCCTGGTGGAGAAGTACGAACCCAAAGAACTGCTGGTGCAGAAAGGTCAGATCTCAGTGGAGGGCTTCGCCAAGTATCTGAGTAGTGAAGAGAACAGCATCATCCCACCAGAGAAGCTGGACCAGAGTGAAGACATGACCTTACCGCTGTCTCATTACTTCATCAACTCCTCCCACAATACATACCTCACAGcgggcCAGCTGGCAGGTAACTCGTCGGTGGAGATGTACCGCCAGGTCCTCCTGTCAGGGTGTCGCTGTATCGAGTTGGACTGCTGGAAGGGACGCACCACCGAAGAAGAACCTGTCATCACACACGGATTCACCATGACAACTGAAATCTCCTTCAagGAAGTGATTGAGGCCATAGCAGAGTGTGCCTTCAAGACCTCCCCTTTCCCTGTCATCCTCTCCTTTGAGAACCACGTGGACTCGCCCAAGCAGCAGGCCAAGATGGCGGAGTACTGCAGATCAATATTTGGAGACATGTTACTGACCGACCCTCTGGAGAAGTACCCTTTGGAACCAGGTGTGCACCTGCCCAGTCCTATGGATCTGACGGGAAAGATTCTGGTGAAGAACAAGAAGAAACACATCAAGACGTCGAGCACCAAGAAGAAACTGTCAGAGCAGGCCTCCAACACGTACAGCGACTCATCCAGTGTGCATGAGCCTTCTTCTCCCAGCACAGGGTCGGCCAACCAGGAGATGACCGAGTCCTCCCAGCCTCTAGAGGTCGCTGagctcagcctccgaccacagGGCAGGAAGTCCATTGGTGAAGTTGAGGCAGAgagtgacgatgatgatgatgacgatgatgactgCAAGAAGGGGTCCATGGATGAGGGTACAGCGGGCAGCGAGGCGTTTGCCACAGAGGAGATGTCCAACCTGGTCAGTTATGTCCAGCCAGTCAAATTTAACTCTTTCGAGGCCTCCAAAAAGATCAATCGGAGCTACCAGATGTCATCGTTCGTGGAGACCAAAGCCTTGGAGCAACTCACCAAGTCACCTGTGGAGTTTGTCGAGTATAACAAGCTGCAGCTGAGTCGTATCTATCCTAAAGGCACCAGAGTAGACTCCTCCAACTATAACCCTCAGCTCTTCTGGAATGCAGGCTGTCAACTGGTGGCCCTGAACTTccagaccatagaccTGTCCATGATGTTAAACCTTGGCATGTATGAGTACAACGGGAAGTGTGGCTACAGGCTGAAACCAGAGTTCATGAGACGACCGGACAAACACTTTGACCCCTTCGCTGAGAGCACTGTGGACGGCATCGTAGCCAACACGCTGTCTGTCAAGATCATCTCAGGCCAGTTTCTGACCGATAAGAAGGTGGGGACGTATGTGGAGATAGATATGTTTGGTCTGCCGGTGGACACCAGAAGGAAGGGTTTTAAGACCAAGACGTCTCAGGGCAACGCTGTCAACCCTGTCTGGGAGGAGGAGGCCTTCACACTCAAGAAGGTGGTTCTGCCCACTCTGGCCTCGATGAGGATTTCTGTGTTTGAGGATGGAGGGAAGTTCATTGGCCATCGCATCATTCCTGTGAATGCCATCCGCCCAGgttaCCACTACATTGGTCTGAGGAAtgagaagaaccaggctctgaCCCTCCCTGCTCTGTTTGTCTATGTAGAGGTCAAGGACTATGTCCCTGATACATTCGCAGATGTCATCGAGGCGTTGTCCAATCCCATCCGTTACGTCAACCTGATGGAGCAGAGAGCCAATCAACTGGCAGCTCTCACTctggaggagggagcagaggaggaggacagcaaaGAGGTCGATGCGGGTGGTGATGACCCCATGGAGCCTGACCCCCGGGTGACCGTGCCCGCAGAGAACGGAGTCAACCACGCCCCCTTCATCGCCCCCAAACCCCCCAGCCTTGTTAGCCACCAGCAACAGCCCACAGGTTCAGTGAAACCAGCAGTGAAGACTGAGGATGTAATCCAGAGTGTTCTTACAGAGATGGAGGCCCAGACCCTGGAGGAGTTGAAGCAGCAGAAGGGCTTTGTGAGGGAGCAGAGGAAGCAGTATAAAGAGATGAAGGAGTTGGTCAGGAAACACCACCGCAAGACCGGCGAGCTGATCAAGGAGCACACGGCCAGGGCTGCAGAGCTGCAGAACCAGCACCAGCGCAGGCGCTCCGCGCTGCAGAAGAGCCACAAACGAGACGgtcGGAGCAGTGTCTGTCGTCCCTGGAGCAGgagctgtgtgtgttggaccaggaGTCCAGTCAGAGACTCTCTGAGCTCAaggagcagcagcaacaacagctaCTCACACTGAGACAGGAGCAGTATTACAGCGAGAAGTACCAGAAGAAAGAACACATCaaaatgCTGGTGGAGAAGTTGACAACCATAGCAGAGGAATGTCAGAGTGCCCAGTTGAAGAAGATCCGAGACATCTGTGAcaagtaa

Function

GO: NA

KEGG:

id description
K05858 PLCB; phosphatidylinositol phospholipase C, beta

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU798901 lncRNA downstream 1731 36259368 ~ 36259824 (-) True G702161
TU798889 lncRNA downstream 27671 36229175 ~ 36233884 (-) True G702149
TU798872 lncRNA downstream 36766 36224432 ~ 36224789 (-) True G702145
TU798775 lncRNA downstream 159365 36101349 ~ 36102190 (-) True G702056
TU798753 lncRNA downstream 209734 36051514 ~ 36051821 (-) True G702039
TU799851 lncRNA upstream 48753 36539491 ~ 36575984 (-) True G703062
TU799909 lncRNA upstream 146494 36637232 ~ 36699970 (-) True G703117
TU799877 lncRNA upstream 152582 36643320 ~ 36644736 (-) True G703087
TU799939 lncRNA upstream 219888 36710626 ~ 36710921 (-) True G703147
TU799947 lncRNA upstream 228358 36719096 ~ 36719296 (-) True G703155
XM_036985407.1 mRNA downstream 55075 36063537 ~ 36206480 (-) False LOC110529235
XM_021612508.2 mRNA upstream 53077 36543815 ~ 36552132 (-) True LOC110529872
XM_021612513.2 mRNA upstream 128363 36619101 ~ 36625881 (-) False LOC110529875
XM_021612511.2 mRNA upstream 128363 36619101 ~ 36626061 (-) False LOC110529875
XM_021612512.2 mRNA upstream 128363 36619101 ~ 36626061 (-) True LOC110529875
trnaa-ugc-26 mRNA upstream 165827 36656565 ~ 36656638 (-) True trnaa-ugc-26
TU798300 other downstream 343380 35900623 ~ 35918175 (-) True G701618
TU798297 other downstream 357283 35900623 ~ 35904272 (-) False G701618
TU798046 other downstream 556242 35641355 ~ 35705313 (-) True LOC110529865
TU798044 other downstream 573919 35641355 ~ 35687636 (-) False LOC110529865
TU800348 other upstream 864358 37355096 ~ 37361593 (-) True LOC110529880
TU800488 other upstream 998489 37489227 ~ 37492157 (-) True LOC110530908
TU801610 other upstream 1546987 38037725 ~ 38038346 (-) True G704702
TU801790 other upstream 1822751 38313489 ~ 38313803 (-) True G704874
TU803684 other upstream 2728906 39219644 ~ 39226313 (-) True G706683

Expression Profile