RNA id: XM_036985426.1


Basic Information

Item Value
RNA id XM_036985426.1
length 4792
RNA type mRNA
GC content 0.52
exon number 15
gene id LOC110530907
representative True

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 36816598 ~ 37146833 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTATGATTGTGTGACCAGGCATGCGCTCGCATCTGAGAACCAACCGACGCTGAGCAGGGAGCGGATGAAGAAGCGTTTGGTGGCATCTGCGAACTCCCGACCACTCAGCTTACTATTGGCAACGGAAAGACGGTAGCCTCGACAGATACAGCGGACACCTGACACTCAGCAACAGAAGGCCAACATAATACATTTAGCTGTAAAAGCAACAACAGTCTTTGCTGGATAAAGACAGCATTCACACATAAGGACGAACGCCGGTGCTGAATCTCAGCTGCGACTAGGGAGGTGTAGACGGCAATACTCAGATCTCATTTGTCTGTGATGAGAATCGCCATCCACCAGAGACCTAAGGCGTGCCCCCGTCATCGTCTCCTCTGAAAGGAAGAGGAAGTGATGTCACGTCACCACAACCGCTTCGAGAGGGAGTACCGAGGGATGCcgtgggagaggcgggacatcATCCGTCCGACTGGCCTCCTCAACGGATCGGGAGCCAATAACAGCTGCCCAACCGTCAACGGTAACAATCGCCCGGGACTCCTCCCACTGCCCGTCATCCCTTCCCTCTTGCCAACCCCGGTTACGGTTGCCGTGACGACATCGAGTGGTGGTGACATGGTTGTCAAGCGTCAAGGAGGCGTCACAGTCACGGCCGCTGGTGCTGCCAAGgtatCAGGTGTGTctccaggggagagggagagccaggCTCCAGGTCTGCTGTTAGCTCCAGGGGTGAGGTGGGGACAGACACCCATCAACCAGCTCACACCCTGGGAGACTGATGAACCTCCTGCCAAACAACAGCACAGAGACTGTGAACCCATagGTCCTCCATGGGTACCTTCTGTAGCAGCAGTGACCAAGTCCAGTCTCCTGCCCCACTCCTACCCCCACCAGCCCCCCTCCTTCAGCCACAGTGTCACTGTCCAGTGCCCTATTATAGGTCTGACTCCCTCCATCCAGTCACCCAtgcccctccacccccacccacTCATGACAGCCCACTTCCAGCTACCCCCGCACTCCACTGCCCACCAACCCCCCGCCATGGTGCTCAAAATGCCCTACCAGCCACCCTATCCCTTGGCCCAGCCCCCTGTCTTCTCCTcgcccctctctaccccctcaggTGGTCCCAGGGGAGCGCACCCCAACCAACAAAACCACAGAATGATGGGGAACGGTCATCTGACGCCTCACCCCCCTCCTCACCACTCTCACCCAACTCACCCTCTCATACAGCCCCATGCCCTGCCTCTGACCAATGGGCAGTTGGCGCGGCTAGTTCCTCCTACTCCAGTAGCCAATCAGGATGGTCCTAGAGGGCCCAATGGGCTGCAGATGCTGAGGACGGTGGGGATGGGAAAGTACGAGTTCACAGACCCAGGACATCCTAAAGAGATGTTGAAGGAGTTGAACCAACAGCGCAGAGCGAAAGAGTTTACAGACCTGAAAATAATTGTTGAAGGCAAAGAGTTTGAAGTCCACCAAAATGTTCTAGCTTCCTGCAGCCTTTATTTCAAGGACCTGGTGAAAAGGTCGTCAGGGGAGACGAGGAGCGGGGAGAAGCTAGAGCTGCAGATGAGCAACATTGGAGCTGACGTGTTGGAGCTGCTGCTGGAGTTTGTCTACACGGGCTCTCTGGTCATCGACTCAGCTAACGCCAAGACACTGCTAGAGGCCGCCAACAAGTTCCAGTTCAACACCTTCTGCAAAGTCGGTGTGTCCTTCCtagagaAACAGCTAACAGCAGGGAACTGTCTAGGTGTGCTGGGCATGGCTGAGGCTATGCGATGTACAGAGCTCCACAACATGGCCAAAGCCTTTGCACTCCAGAACTTCCCTGAGGCGGCAGGTCAGGAGGAGATTCTGAATGTGTCTAAGGAGGACCTGGTGGCCTACCTGTCTAATGACAGCCTCAATACCAAGACTGAGGAACTGGTCTACGAGACTGCAATCAATTGGATCAAACGAGACCCCACCTCCAGAGTACAGCATGTATCAGAGTTATTAGCAGTGGTGCGCCTTCCCTTCATCCACCCGTCCTACCTGCTGAACGTTGTGGACAACGAGGAGTTAATAAAGACGTCGGAAGCATGTCGAGACCTGGTCAACGAGGCCAAGCGATATCACATGTTACCTCACGCCAGGCAGGAGATGCAGACTCCTAGGACACGACCACGGCTATCTGCAGGTGTGGCGGAGGTGATAGTGTTAATCGGTGGTCGCCAGGCCATCGGTATGAACCAGCGGTCTCTGACGGCGGTGACGTGTTTTAACCCTCAGAACAGTAAGTGGCACCCACTGGCCAGCCTGCCCTTCTACGACCGGGAGTTATTCAGCGTCATCTCAGCAGGGGACAACATCTACCTGTCAGgTGGGACAGAGTCGGGTATGACGGTAACTGATGTGTGGTGCTACATGTCTCTATTGGACAATTGGAACCTGGTGTCTCGTATGACGGTGCCTCGCTGCAGACACAACAGTCTGGTGTACGACGGGAAACTCTATACCATTGGAGGTCTGGGCGTGTCAGGAAACCTGAACCATGTAGAGAGGTATGACACCATAACCAACCAGTGGGAGACTGTGTCTCCGCTCCCCAAGCCGGTGCACTCTGCAGCAGCCACGGTGTGCGGGGGGAAGGTGTATGTGTTTGGAGGGGTGAACGAGGCGGGCCGATCGGCGGGAGTACTGCAGTCATACGTTCCTCAGACCAACTCCTGGAGCTTCATAGAGTCACCCATGATCGATAATAAGTATGCCCCAGCGGTCACTCTGAATGGGCACATCTTTATTCTGGGAGGAGCCTATGCCCGGGCCATCACCATCTATGACCCAGACAAAGGAAACATCAAAGCCGGTCCCAATATGAACCACTCACGACAGTTCTGCAGTGCGGTGATCCTGGATGGTAAGATCTACGCAACGGGGGGCATTGTGAGCAGCGAGGGTCCTGCCCTGGGCAACATGGAGATCTTTGACCCCCACACCAACAACTGGACGCTCCTCCAGTCGCTGCCCTGCCCTCTCTTCAGACACGGCTGTGTCGTCATCAAGAAGTACATCCAGAGTGGCTGAGATCGGTTCAGTGATGAATGAGTTTCCTGAAAGCTTTGTAGCCAATGTGGCTTTATTTTCTCTGGACAACCCAGACCCATGCCTCTTGTAGAAGAGCAAAGTGCTTCAGGTTCATTTGGCGAATTTTGTTCACTTTTCCCCCAGAACTGTCAAACATTTACAATTATTGTTAGTCTCCCTCTGCTGTGGTGCTGGGTTATCGAGACAAACTAAGTGTCATGTTAGCTATGAAGCTATCGGGAAAACTCCCCCCTGACCGTTTTGGTCTGGTTAGGACAGGACACTCTGTGTGCAGCTTTTGGGGGTCGATCGGTCAGCACCGCTGGACTATCCAACTAAAACCCAATCGGGACTTGATGCcagtgttgttgtctttacccccccaccccaccccttcagTCCCCCATCAACCCCCTGTGCAGAATGTAGGCATCTTACTGTATCTTGAACCACTTGGCCATGTCAGGTACTGGTGCCTAAGCTACTGTATGTATCATATAGTGTAGcttatctccccccccccccccccaataaaataGACACAGGGCCACTCGAGACAAAAGCTCCTTGGTTTGTTGTTCCCAACTTCTTGCTAACTCCTCTTCCGTTTCATACAAATAGTTAATTTAGTTCCATCGCCTCAATTGAAAGGCCCTTACCTGTTATGTGTTTGTGACTCAAGTATGTTAAAAACCATCCCAGTCTTTGTTCTGTGACTCCTCTAGTGGTTTCTGTTCGTGAGGAACTTCTTTCCAAATCAGAGGGCTCCCTTGGTTTATGAGGACATTCAGTAGTGGCATTTGAAGAACAGGAGAACTGGGCAGATGTCTCAGTGCTTAAAGGGACAGTGGCGAGATAAGGAAGTCCACAGGGTTTTAGAAACAAAAATCTGTGACGAGAGAGCCACAGCTGATGAGTGAGGAGCCTTGTTTTTTGTACAGATGTTGTTTCGCCCTCGGTTTAAAAGGACACGTTGGATACTTAGTCTCTTTTTGGGCCAGAAACATCACTGTTGGCAGATGACTTACCTGGGAATGGCAGAGAGGGAATCCCTGTATCACGACATCCCAGAGTCTGAGAAAGACACTACAATGGGGCAtttctcctccacacagccaAAGCACAATAACCACCAGTGGCTCCAAGGATCAAAATGTTTCACTAGATTTATGTTTATCCTCCATCTTTGTTTTTGTTCCATCCTTTTGTTTTATATTTGTATATCATTGTTGGGTGGGTGGGATATGGATGAGGGTTTTGGGGACATTCTGTAAATATGGGAaggaaaaatgtatattttaaaaCCTGAAGGTGATTCTGTATAAATGTTTTTAGAAAAAAACTTGATAGGTTGGACTGAAAATGGTGGGGCCATACTTGCGACTATTAGAAAACGTTTaatggctctattcaatccgcgtcgcggaagttcagctttacaagcggagactgcattcacgttTCATGTCGGCTCAGTCGGAAATTACCTTAACATTTCTGTCCCGGAAGCTGTTACGCTTCAGCTTTACAGATTGAATCGAGCCTCGTGTTTTAGTTCCATTTTATTTGGCTGATGCTTACACTTGTTGACATAGTTGCACGTAATCTAAGGTTACATGTTAGCTGTTACCATTTCATAACCTGACAAATGTAGCCCTATGCGAACCTCACCTGGTGGCCGTGATTATTAAAAAGAAAATTGgtatga

Function

GO: NA

KEGG:

id description
K10465 KLHL29, KBTBD9; kelch-like protein 29

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU799208 lncRNA upstream 37076 36778841 ~ 36779522 (+) True G702459
TU799167 lncRNA upstream 103687 36712638 ~ 36712911 (+) True G702421
TU799165 lncRNA upstream 104939 36711308 ~ 36711659 (+) True G702419
TU799164 lncRNA upstream 106098 36710253 ~ 36710500 (+) True G702418
TU799162 lncRNA upstream 112817 36703325 ~ 36703781 (+) True G702416
TU799689 lncRNA downstream 266359 37413192 ~ 37413641 (+) True G702904
TU799698 lncRNA downstream 286532 37433365 ~ 37433593 (+) True G702913
TU799700 lncRNA downstream 287689 37434522 ~ 37434768 (+) True G702915
TU799701 lncRNA downstream 288045 37434878 ~ 37435084 (+) True G702916
TU799738 lncRNA downstream 347523 37494356 ~ 37500703 (+) True G702950
XM_036985424.1 mRNA upstream 48627 36758207 ~ 36767971 (+) False trib2
XM_036985425.1 mRNA upstream 48627 36758214 ~ 36767971 (+) True trib2
XM_021612521.2 mRNA upstream 142329 36665592 ~ 36674269 (+) False LOC110529878
XM_021612523.2 mRNA upstream 142329 36665612 ~ 36674269 (+) True LOC110529878
XM_021612517.2 mRNA upstream 153772 36642304 ~ 36662826 (+) False gpcpd1
XM_021612527.2 mRNA downstream 165898 37312731 ~ 37354860 (+) False mfsd2b
XM_036985428.1 mRNA downstream 166109 37312942 ~ 37354860 (+) False mfsd2b
XM_021612528.2 mRNA downstream 169806 37316639 ~ 37354860 (+) True mfsd2b
XM_036985430.1 mRNA downstream 218358 37365191 ~ 37384842 (+) False fkbp1b
XM_021612535.2 mRNA downstream 218675 37365508 ~ 37384842 (+) True fkbp1b
TU799161 other upstream 115859 36700438 ~ 36700739 (+) True G702415
TU797474 other upstream 911900 35904049 ~ 35904698 (+) True G700864
TU797266 other upstream 1201932 35613164 ~ 35614666 (+) True G700685
TU797136 other upstream 1354558 35454848 ~ 35462040 (+) True LOC110529856
TU796067 other upstream 2688297 34127593 ~ 34128301 (+) True G699605
TU799594 other downstream 101904 37248737 ~ 37249809 (+) True G702817
TU800686 other downstream 624031 37770864 ~ 37771635 (+) True G703835
TU801178 other downstream 1079222 38226055 ~ 38229974 (+) True G704281
TU802209 other downstream 1609038 38755871 ~ 38756305 (+) True G705273
TU802471 other downstream 1853663 39000496 ~ 39001878 (+) True adgb

Expression Profile