RNA id: XR_005052873.1


Basic Information

Item Value
RNA id XR_005052873.1
length 7761
RNA type mRNA
GC content 0.48
exon number 29
gene id LOC110529879
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 37149323 ~ 37271260 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATGCACATTTAGCTATCATCTTATTAAGTGGCATGTCACATTAGTCTAATTTAACTCCTTAATTAATATGAATCGAGACCCTTGACCAGTCGCtgaaaaagtacaaataaaataAGGATCCCAGTAGTGATGTGAGCAGTCCCAGCAGTCCTGGACTGTCCCCTCCCTTGAAGCGAACCCGTAGACAGACCAGCTCCAGCgacacctctccctccccccaggcCAAGGGCCAGAGGGTCTCCTGGGGCAAGCCCACCTACCGCACCAGGTTGTCATCTGGCGCCCTGCAAAATGGAAATGCCCATAAGGAGGAGGGGGCAGGAGACCACTCTCACATGAATGGCCATGTTGACCGGAAGAGGAGCTGCCAAGTGAGGAAGAGCCAGTTTGAACACCTCAACCAGAGCCTGCTGTTTGACCAGCTcgtcaacagCACGGCGGAGGCAGTTCTTCAGGAGATGGACAACATCAGCAGCATCAGACAgaacagggaggtggagagacTCCGCATGTGGACAGACACTGAGGTGGAAAACATGGACATGTACTCTCgtgtgaagaggaggaaggcacTGCGCAGGAACACCTTTGGCATGCAGACACACCACAAAGCCATGAGCAAGACAGAATCGGAAGAGGGGACTGAAGAATCTCACGGTGAAGAAGAGGATGAcgaagcagaggaggaggaggaggaggaggatgatgatgatgatgaaagaGACGAGACCGAGGAGGCTGGAGAGGGGAACGACAGACCGTACAACCTGAGACAACGCAAGACCGTACAGAGATACGAGGCGCCACCTATTGAGCCTGTCAACAGAAAACAAACCAACCCCTCCCTGTTTGACACCCACAGATCCCCAGCAAGGAGAAGCCATATACGAGTGAAGAAGCATGCCATCCACAGTAGCGACACTACGTCGTCATCTGACGAAGAGAGATTTGAGAGGAGGAAAAGCAAAAGCATGACCCGGGCCAGGAACAGGTGTCTGCCTTTGAGCCTGAGAGCAGAGGACCTGGCCAGTGGGGTGCTGAGAGACAGGGCCAAGGTGGGAGCTAGCCTCGCTGATGTGGACCCCATGAATCTGGACACCTCAGTGAAGTTTGACAGCGTAGGAGGGCTCTCCAACCACATCCAGTCTCTGAAGGAGATGGTGGTCTTCCCTCTACTTTACCCAGAGGTCTTCGAAAGGTTCAAGATACAGCCCCCAAGaGGGTGTCTTTTCTACGGCCCACCAGGTACAGGGAAGACCCTTGTAGCGCGGGCTTTGGCCAACGAGTGTAGTCAAGGAGACAAAAAGGTGTCTTTCTTCATGAGGAAGGGAGCCGACTGCCTCAGCAAGTGGGTCGGCGAATCTGAACGACAGCTACGCCTACTTTTTGACCAGGCGTACCTGATGAGGCCCTCCATAATCTTCTTTGATGAAATAGACGGGCTGGCCCCAGTGCGTTCCAGCAGACAGGACCAGATACACAGCTCCATAGTGTCCACTCTGCTGGCGTTGATGGATGGTCTGGACAGCCGAGGGGAAATCGTGGTGATCGGTGCTACCAATAGGCTGGACTCCATAGACCCTGCTCTACGGAGACCTGGACGCTTTGACAGGGAGTTCCTCTTCAACCTGCCTGACAGGAAGGCCCGAAGACAAATCCTTGAGATCCACACGCGGGACTGGAATCCTAGACTAGCTGAACAGTTTGTAAATGAGCTGGCTGAGAAATGTGTCGGTTACTGTGGCGCAGACATCAAAGCACTTTGCACAGAGGCGGCCCTGGTGGCACTGCGGCGTTGCTACCCCCAGATCTACGGCAGCAGTGTTAAGCTGCAGCTGGACGTCAGTACCATCGTGCTGGAGCCTGGGGACTTCAGCCACGCTCTGCGGACCATCGTCCCAGCTTCCCAGAGAGCCCAGGCTCCTCCAGGCCGAGCCCTGGCCCCCAACATACGCCCCCTACTAGCCAACACACTGGCCACGGTGCTGGAGGTCCTGCTCCGAGTCTTCCCCCATGCAGAAACACGGCacggggagagtagaggagATGTTGACAATCACCTGCTAGAGGAGGTcagtgaagaggagactgatGGAGCAGCTCCCTCCATCTACAACCTCCAGCCGGGATccccaaagacacacacacacccctctatgGCACACACACCCGTCCTACACTTCACCATATCAGCCCTTCACCAGCCCACGTCGTACCGGCCTCGCCTGCTGCTGGCGGGTCCCCCCGGTTCGGGACAGAGTTCTCACCTGGCCCCTGCTGTGTTACACCACCTGGACAAGCTGTCTGTCCACCTCCTAGACTTGCCCACACTCTACTCTGTCAGCGCCAAGACACCCGAGGAGTCCTGCGCTCAGgtgttCCGTGAGGCGTGTCGGAGCGTGCCCAGTGTGGTGTTCATGCCCCACATCTGTGATTGGTGGGATTCGGTCAGCGACACGGTGAAGAACACCTTCTTCTCTCTACTCCAGGACGTCCCCTCTTTCACCCCCCTCCTCATCCTCGCCACCACAGAGACGTGCTACACACAGCTACCACAGGAGGTGAAGTTGATGTTCCAGACGACGTACGGGGAGGTGGTCAGTCTGTCTtcacctggagaggaggacagacgaAGGTTCTTCATGGACCTGCTACTGGTACAGGCTGCTCGAGTGCCATCCCACAGGAGACACAAAGCCCTGCTGTGTGAGGAGGTGCTTCCGGTAGCGGAGGTCCCTGGCCCCAGGGTTCTCTCCCCTGAGGAACAGCTTCGCCTGGCCGACCAGGAGGAGAACACTCTGAGAGAACTGCGTCTGTTCCTCAGGGACGTCACCAAGCGCCTCGCCATAGACAAACGCTTCAACATCTTCAGCAAACCTGTTGACATTGAGGAGgtGTCAGACTACCTGGAGGTAATTATTCAGCCTATGGATCTATCTACGGTCATGACCAAGATCGACACCCATAAATACCTGACGGCCAAGAACTTCTTGGTGGACATAGACCTCATCTGCAGCAATGCCCTGGAGTACAACCCTGACAAGGAGCCCTCAGATAAGATCATCCGCCACAGAGCGTGCAGTCTGAAGGACACGGCGCATGCCATGCTGGCCTCGGAGCTCGACCCAGAGTTCAACCGCATGTGTGAGAAAATCAAGTCACGCAGGAAGAGggACCTCCAGATTCTGGATGTGCCTCCTGTCTCCCTGGCTGCCGTGGTAACCACCAGGAAGCCGGCCGGAGAGGAGAACACTGGGAGCAGTGTCGACAAGCACCACTGCATCAGCAGCAATCACATAAAAAGGAAAGCACGTCGGCGGCCATCTTGGGGGCGGGGCATCATTAGGAAGAAGAAGAACTACAAGAAGGGaacggaggaagaggaggatgaaggtgCGGAGCCTAAGCCGGAAACGGCAGTACCCAGCGACTCCTGTCTGACTCAGGACGAAGAGTCTTCCTGTGACACCATGGACCCTCAGCCCAACggacaccacacacaccctcacacatatGGCATCTCCACGGAGGAGGAGAGCTCCAATGAGGCCCCTAGGGGCCAGAGAACAGAGACAGGGCCCAAGGAGGACGAGACACCAACTACAGAAGACCAAGCCAAATCTACATCTACAGACAAAGACCCCCAGTCTAAAAGTGAGTCTTATTGTAAAAACAAGGAGCCTCAAGCTCAGGAGATCCAGTCTAAAGGTGAGGGGTCATCATCTAAAGATGAAGGTTCCCAAGCTGAAAGTGAGAACCCCCAAGCCAAGCCTAAAGAGGAAGGTTTCCAGCCCATGGATGTTGAGAAGGTCCAGCCTAAAGATGACGAGGTCCAGTCCAAGACTGAGCAGCAGTCGTCATTCCCCACGCCGGCCACAGTCCCTCGGGAGTGTGTGAACGGGAATGAGTCCATGGATAGCCTGGATTCCCAGGCCCACAAGAGCTCTGAGACAGAGTGGCCTACAGCGGTCGAAGGTGAAGCGTCAGAGGGGGAAGTGTCGGCGTCTGCAGTGAGCACAGGAACTCAGGAACGCCGTCTTCAGGACGGGAGGACAGGAGACACGGAGACGggcaaggaggagcaggacagagaaGGCTGCTCCAAGGGGAGGAAGTGCAGAATGAGACAATCAGAGCAGTCAAAGGCATCAACTGACGGGACAGAGGAGAGTCCACAGACCCCTCCACCACCTACACTAGTGGTCGATCAACATCGACTCACGGCCCTCTTGGACACAGTGGTACAGAGGAGTGAAGGCTACAGCGTGGAACGcttggagagactcttctctctcctcagtcagTGCATCTACCAACACCGACTGGACTACGACAAGACACGGCTACAGGAGatGCAGTGTGAATGGGTTGAcaacactgagtataccaaacattaggaacaccttcctaatcgTGGGTAAAATcgcagaacagcctcagtttgtcggggagatggagaggaaagtccagaatttcattacattcctgTGAGACAGCCAGGTttaccctgaacacacacactcaagcggGACAGAGACAAGCCTTTGAGCCAAGTACTTACACACAGAGCAAATATAGAGCCCTGGTCTTAACATGAACGACAGAACGGGAAGACTTTTCTATGGTGCTATAGTCTCAGGTACCCTGGTCGGACCCAAATCCAGTCAACAACCAAACAGACTCCTGGACACGTACACACGAACGGTGAAACGGACATTCCTGGTGCTATTCAGGTGCTATCCTAATCCTTGCTGCTGTTGGGAGTAACTTGGAAACTAACCAACAAAACAGATTGGGTGATGTCATATCTCAACGACGGCCTACTTTTAAACTGGGCACACAGTAATCCCATTCACAGATTGTCACCAGCAGTGTGCGTATGTGCAGTTAGCTTGGAGGTTGAGACAGTCTCCTGTCTTGTCACCATTGCTGAGCCCATGTCATCTCTCAGTACGCTAGTGAATCAAGATTATAGGCCAGTCATCTCATAGATACAACAGCTTACAGATCATACTGAGTCATTAAAACAGTTTGGTTTGAATAGCCTCTGGATCTAAtcaattatgatttttttttattttataaccACCGTTCTCGCTCCAAACATTGTCCAATGTACATTGAAATGTTTTTAACATGACCATACTGTAGGGTAAAGTTGGCACTGCTGGGCTAGAATCAATTTCCAGCATGTACATGCGTTACAAAAACATCAAATCCCCATTAATAAGGGTGTTACTGAAATGCATCAATGGGAACTGAGGAAGCATTTGTTCGAGGTTTGCAGTGAACATCAAAATAACATTCATTGCTATGACTGATAAGTATTGTCAAACAGATTGATGTGCTGCATCACAGTTCTGTGTAAAAAACACACAAGCTGTGCCCTGCTAATTTTTATTTCCTGTCAATCCACACCTAACTGGAGTAACTCAAATTAAATTGGACACCTTTTGTAATTCGCACTGCCTAGCATGTGCTTTATTTTACCCCCAATTAACTTTCCTAAAGAACAGCTGTTAAGGTTTTTATCAACTGCTCTGTTCCATGTAATGCTGGATGTAGAAGTTCCCCTTAACTAACCACGTATCTAGGATTAAATGACCAAACTCTCAAGCCTAACTTTAACCTTGACAATGGTGTTATTAATCTGACCCAGGACCAGTGGATAGAAGTCTACAGTAGGAAAGCAGATCTGTCTTTTCCTGCCCACATGAGTAGAAAGtaataataaaatacattttatgtcAACGGATGCCACAAATTAGTCACAGCAAAAGTGGTGCCAAGTTTCCGTGACAGTTTTTAGTCGACATTCATAGGAAATAAATCTTAACTCTATAAAGATTTAGATAAGGAACTTACGGTTGGCTATGTATTATGTTGTGCATTTGAttcagaaaaaaaaataaaattatattGTATGATACATTGGAAACAATGTTTTGAATTGTTTGTGACGCTTCTGACCATGAACAAGGCCATTCAAGGCAGTGCTCTGTTGAGGTATAAAACAGCATTCTATCGTTTGAATTATTTTGTTGATGCTTTTTATTGTCTGTCTAGTAGGAGGGGTGTAATTAGCTATAGCCAGCCCATCCATGTTCACCTTGTGGTAAAGAAATGCATTTTTGTTTTTCAACTTTTTCTGGTCTTTCCTTGGCCATAGATGGATCCATGTTTTGACGAGATGTGGCCAGCCTCAGTCTTTTACATTCACAGTTAAAAGGGGGACTCCGATATGACATGGTTGCAGAAAGTACACCGCAACAACTAAAAGTGTTATAGCACAAGGCTcatcttctccactgttttgGTGCTGTGaagcagatactgtgtgtgagcGAAGTCTTGCGTCtcactcatctcaatatctgcgaCAGTGAAATTTGTCTGTCTACCTTTTAATGCCAgggttcttcaggtcctggagaACTACTAGgcatgcaggcttttgttccaaccAAATCGTCATGGTGTTCCTCAGGCTTGACTACGATTGGGCAGTAACAGAATCCCGTATGCCTCGTACTTCTCCAGGATTGGAGAGCCCTGCTTTTATGCTGATCCTAACTCCATCTGCCTTCTCTTGGAGTGCCAGGTGAAGATTTAACAATTAAAATAAACATATGCAAACTGGCATTGGAATACTGCAGAGATAGAGAAACAAAGCTACCTCAGCTTAATTTATTTTAATGCTAATAAGACAAACTGTTTACCGGGTGCAAACAGTATTTTGCCATGTTCTAAACTATTGTCGCAACACTCGGTACAGCTAAGGTACTGGATAATCAGTTCTGTGGCTGCTTCGGTAACCCAACAGTTTGTTTGGTTGGTTCTCACCttgttcagtttttttgtctatTGCATTTGAGCCGAGACGAAACATACAGCATTTAATTTCAAGGGAATGTCAAACTGTATATTTCAGTTCTGTAGACCGAGACGTCCTAAGATTGCTTTCCTTTCAGATCGTACTACTACACATATTCGCTAGTGTTGTCCATCAAGCCACAATCTCCTTTTTTTTCATTTGAGGGTAATTGTTTTTGTAGACTTGAATCTCCTTCTCGTGGTGAtttaaatttgtattttatttattaataatTAGACATGTTTTTACGTCTATCCATTAAACAAATTGGCAATAGTTGTTACTCGGTTATGAGTTTAGTGCTGAAGTGAGGTAGCGGACTAGCGTGTATTGGAGAATAAAGAAGTTTACAGGTGTCTCAGGTTTCTTCAGGCTACACATGACCTTTCAACTTTCCTATTTATTCCATTGTGgtgtttgtttttctttagttttgTGGTTGTGGACTGTGGTATACCTGGATGAGGCTAACGTTGACTTAATGGAATTTTTACATCAAAACAATAGTGTGTATCTTATTCACGTTGCTGACACAATTTGGCAAGCATCTGTCAAAGTTTGTCAGCAATTTTTGTCCCTTAAGAATTGGGTTTCAAAGtgtcatacattttttttcatcCTCTCCTTGTTCTTTTCTTTACAAACAACCAATTTTTGTCTGGTAGTTAAAGATTATTTAGTCCAGTATGCACAATTTTCCATCACTACTTACTGAGTTTCTCGTGGGATTTATTTAGTAGATTTTGTTTTCGTAGCCTCACCATGTTTAATGAACATCCTCTTCCCCATCAAATGTTACTTTGGTGCAAGTTATTTGAGAGAAACTTTTACTGTATTTCTAAAAACTGCTGTGATATACTTGAATAAAGGTGCAAATTGTACTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU800223 lncRNA downstream 215 37148302 ~ 37149108 (-) True G703407
TU800200 lncRNA downstream 90056 37058572 ~ 37059267 (-) True G703387
TU800106 lncRNA downstream 217083 36932036 ~ 36932240 (-) True G703301
TU799997 lncRNA downstream 369776 36778844 ~ 36779547 (-) True G703198
TU799978 lncRNA downstream 381352 36765634 ~ 36767971 (-) True G703179
TU800376 lncRNA upstream 119115 37390375 ~ 37423284 (-) True G703547
TU800447 lncRNA upstream 141681 37412941 ~ 37413557 (-) True G703617
TU800378 lncRNA upstream 156847 37428107 ~ 37429823 (-) True G703548
TU800457 lncRNA upstream 171007 37442267 ~ 37442613 (-) True G703627
TU800482 lncRNA upstream 199631 37470891 ~ 37472743 (-) False G703647
XM_021612520.2 mRNA downstream 466985 36674680 ~ 36682338 (-) True gzf1
trnaa-ugc-26 mRNA downstream 492685 36656565 ~ 36656638 (-) True trnaa-ugc-26
XM_021612511.2 mRNA downstream 523262 36619101 ~ 36626061 (-) False LOC110529875
XM_021612512.2 mRNA downstream 523262 36619101 ~ 36626061 (-) True LOC110529875
XM_021612513.2 mRNA downstream 523442 36619101 ~ 36625881 (-) False LOC110529875
XM_021612526.2 mRNA upstream 83840 37355100 ~ 37361922 (-) False LOC110529880
XM_021612533.2 mRNA upstream 154478 37425738 ~ 37456935 (-) True opn8a
XM_036985435.1 mRNA upstream 202969 37474229 ~ 37626960 (-) False LOC110530908
XM_036985432.1 mRNA upstream 206072 37477332 ~ 37626960 (-) False LOC110530908
XM_036985434.1 mRNA upstream 206072 37477332 ~ 37626960 (-) False LOC110530908
TU798300 other downstream 1231148 35900623 ~ 35918175 (-) True G701618
TU798297 other downstream 1245051 35900623 ~ 35904272 (-) False G701618
TU798046 other downstream 1444010 35641355 ~ 35705313 (-) True LOC110529865
TU798044 other downstream 1461687 35641355 ~ 35687636 (-) False LOC110529865
TU800348 other upstream 83836 37355096 ~ 37361593 (-) True LOC110529880
TU800488 other upstream 217967 37489227 ~ 37492157 (-) True LOC110530908
TU801610 other upstream 766465 38037725 ~ 38038346 (-) True G704702
TU801790 other upstream 1042229 38313489 ~ 38313803 (-) True G704874
TU803684 other upstream 1948384 39219644 ~ 39226313 (-) True G706683

Expression Profile