RNA id: XM_021612526.2


Basic Information

Item Value
RNA id XM_021612526.2
length 4020
RNA type mRNA
GC content 0.49
exon number 3
gene id LOC110529880
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 37355096 ~ 37361922 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGACGTCATCGGGTCTAACAATCGTCTCGCCTCGAATTGTGCATGTGCTGGctgtcaaatcaaaggcactccttaGATATAACGTTGTTTTGAcgaaaacgtgtcagtttgtcgctttcacgaggttggagtaataacatgtgcCGTTAGACATCGAGAAAATTAACAACATGAAGAAtctttcacttctctcattgacttctgaAACCCAAAACCCCGGAATGGTCTGTTTGGTATCTTTCCCAAACGTTCCCAGAAGTCTCGCGATGTTgcacctctgggtttagaaactctgtgccGTCATGCTTTTTGTATTGCCTCGCTATTCAATTCCGGTTCATGATAGCAACTTTCACCCCGGGAAAAGTGAAATAAACGTGGCAAATGTAATAAAAGGATTATGGTTTGACAAGAAAACCGAGGCATGTAATGGCAAGTTTGTGTATAGAATTTCGTGACAGAAGAATTTATTCGCGATTAAATCAAGCTATCTAGTTCCTTCAGCTTGTCCCTGCTGGCTTTAGTTGCTAGCTTGGTTATTGAGTTGCATGGGCTTGCTGGACAATCAAAAACTTTGACAGCTTACGTTAGCAACATAGGTAGCTAATTATTTTCATTTGTTGAGTAGCTAGGTATTGTAGTTGACGGCAGCAAATATTTGTTGTAATAGTTAGCTGTACCTTCATAGTTTAATTGCATTTGATGTGAAcatagctagctatgacaatgtCATTTTAGACAGCACAAAGTAATAACAACTTGAATAACTGTAGTTAAGCGGGATTGCTTGATTGTCTCTCATTGCCAAACGCTTGACATTACCTAAGGTCACAGCTGCCTACCGAATGTGATCAAATCTACTTCTAGTGTAGTGACTCCTTGAATCAGTTGAGTTAGTTGACattgctagatagctaattaacACAGTTTGAACTCACAAGATACAACACTGATATCATTATTTGTCTTTAAGACAGGTGGCTAAAATATCCTAGCAGATATGCATGGCTAAGGTCATTCAGACTAATCAGCTCAGCCCTGGCCCTGAGGTGTTACCTCACTCAGGCAGAGGGGATTACGGATTTTGCAGCACCAGGGATGCATGACAGGAGAGACTTGTCCTATTCTTAGTGTAGGATGGCCGTTAAAGTAGCTGGAACTAGTATTATGCACGTCAACATCCATCTCACGACCGATATCTTCTGCTCTCATCAATGCTTTTGAATGATCGATTTTCTCCAATGTCACTGATCAGTGAGTGatctttttttttatctctcGCCGTTTTGGATTAATCCATACCCTGCCTGGCTGTCAGTATGGAACTGGGCAAAGCCAAGTTGCTGAGGACCGGTCTGAACACGCTACACCAAGCCATCCACCCAGTTCACGGGATCGCATGGACGGATGGGAAACAGGTCTGCCTCACCTCCCTTTACTATGCCAACGGTGACGTGAAATTCGGCGACACCAATGTCATTGGTCAGTTTGAGCATGTCTTCGGTCTCTACTGGGGCCCTCTATGCTGCTCCGGCTCTCCTGCTCTGTTGGCCGTCCAACACAAGAAGCATGTCACAGTGTGGCAGCTGCAGCTCAGCGCTCTGGAACAGAACAAGCTGCTGTGCACTCAGACCTGTGAGATGAGCGAACCGTTCCCCCTTCTGTCTGAGGGATGTGTCTGGCATCCCAAGATGGACATCCTTTCTGTCCTTACCAAGAAAGATGCCTCTGTGCTGTTCTGTGTCCGTGTGGACAACCGCAGGGTGAAGGCTGATATTAAAGGCAGTGGACTCATCCACTGTGCCTGCTGGACCAAAGATGGCACCCGGTTGGTTGTGGCCGTTGGAAGCGCCCTTTACTCCTACATCTATAATGATGTTCAGAAGAGTCTTTTAGCCTGCTCTTTCTGCCCTATCTTCGACGTGGGTGGGTACATCTGTGCCATCGAGTCGACAGGCGATGCCCAGGTGGCAGTGGCTACAGAGCTGCCTCTGGATAGGATCTGCGGGCTGAATGCAGGTATAGTCTTCGACGTGCCCTCAGATTCCGAGTCCTCCCTACCAGGACATTCTTCTCTTATGGTGATGTTGGATGAGGATGGCTGTATAGACCCCCGCAGGAGGTCCTTTGACTCGGAGAGGTCCTACCTGTCCTGCTCTCCGTCTGGCGGCCCTATGGACCTCACCCACCTCCTGGCCAAGCACCGGCGCTCCGACCCCAGTCCACTCATAAACTTGCGCCGCAAGGACCACCTGACCGGCTCCGGACAGGATTCATCTCACCTTATCCTTGTCACCTACGAACGGAAAGTCACCAGCACCAGTAAGGTCAGCATCCCTGGGATCCTGGTGCCAGACATCTTGGCCTTTGACTCCAGAGGCTCCATGGTGGCGGTGGCCTCCAACACGTGTAGCATGGTGCTGGTCTACTGCATCACGCCCTTCGCTATGCCCAATGTCCAGCAGATCTCCTTACAGAAGAACGAGAGGCCCAAAGGCGTCTGCTTCCTCAGTGACAAGACGTTGCTTCTCATGATCGGCAGACAGAAGTCCAACGAACctgccttcctcccctcctccaacACAGAAAAATACATCCTGCACCTCTCCTCCAAGGAGATAGTCTACGATGGAGAAACCCCGGCGTCTCCCTCCCCGAACCGGCAATCCCCCGCTAATTTCTACCCGGGGATTAGGCGCCACTCGGAGCATGTCTTCTCTaaggaggagcagcaggagcGTGTGGCGATCAAGGAGTTGGTGCTGCCGGGAGGAGGTGTAATCCAGTCCCGTTCTCCagggagcagcaggaggaggctggtggaggaggtgaggagcCCGGAGCCCAGCTCAGTCGACTTTCCCTACTCTGACCTCTGCCGCCCCTCTGATCAATCCCTCTCGAGCGCCTCCTCCATTACGGTCGAGAACTTCGACATGGAACCCATCAACCGGATGAGAGGGTCAGTGCAATCTGGGGACTTGAGTCGACCCTGCTCCCCATACTACAACCCTGGGGATAAGCCCCACACGGAGCTCCCCACCCTGCCCAAGACCACCCCCCTGGCccccagagagaaggagaggaaccTGGAGCAGCTGTCCCAGAACATGGAGAGGATTTTCTCTCGCTTCTCTGAGGTGCAACAGTATCTCACAGAGATCAGGGACTTCACTCAGAACGGGAAAAGGGGTTTGGGGACTATTTACCCCAATGCCTGTGAACCTCCATACGTTAACATCACATGTCAGAAGCAGCTGTCtgaaaatgtgtttatagatgagAGAAGACCAGTGTTGCTGTGTGAGGGGAAGCTGTGTCTGAAGGTTCTTCAGGAGCTCTTTAACCTCACTATAGTAGAGATTATGTATGGTCCGTTGTGGATAGTCCTAGTGGCGGATGCAGAGGGCTTTGTACCCCTGACTTTTAAACCCAAAGAGGAGTTGACCGTGAGGAACGGCAGGAGGAAATCTCCCATCAGAAGCCCTGGCAGCCCAGACACATGCCCCTCCAGCCCTGTGAAATCTCCCTCAAGCCCAGCTAAATCACAGACTTGAACAAGGCCTAGCCCCAAAACAGAGACCTCAGCATAGTGGGAGAGAGCACAGAGCATGGGACTAGCATAACACACAGGATATGTCAATGCTTTATGCATACATCTCTAACAACTGGACACACAGACCCCCTCTGCATCTTCTTATGAACAAGCAGTACTGGGTGGCAAATTCACCTTTTTCAGTTGGGGAATTATTTGAGACAAATGTTTGTCACACTTTGGAAAGTAGCACCTTTCAAACAATGTTTACATTTAGTGACGTTTGGATATTATATTGGTATTTTTTGTCTTTGTATTATATGTACATCTGGTTCAAGATGAagttgataaaaaaatatatcggACCAatgaagtactgtagtagtgtttTGGGTGGCCTAGGTCAGGAAAGTAGCCACCATATCCTGTTTATCCTGTTTGTGTGTTATGTGATTGTATAATATTAAAGCCCTCAAATGTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU800328 lncRNA downstream 79884 37252873 ~ 37275216 (-) True G703503
TU800335 lncRNA downstream 93052 37261736 ~ 37262048 (-) True G703509
TU800221 lncRNA downstream 202384 37149328 ~ 37152716 (-) True LOC110529879
TU800223 lncRNA downstream 205992 37148302 ~ 37149108 (-) True G703407
TU800200 lncRNA downstream 295833 37058572 ~ 37059267 (-) True G703387
TU800376 lncRNA upstream 28453 37390375 ~ 37423284 (-) True G703547
TU800447 lncRNA upstream 51019 37412941 ~ 37413557 (-) True G703617
TU800378 lncRNA upstream 66185 37428107 ~ 37429823 (-) True G703548
TU800457 lncRNA upstream 80345 37442267 ~ 37442613 (-) True G703627
TU800482 lncRNA upstream 108969 37470891 ~ 37472743 (-) False G703647
XR_005052873.1 mRNA downstream 83840 37149323 ~ 37271260 (-) False LOC110529879
XM_036985427.1 mRNA downstream 83997 37149323 ~ 37271103 (-) False LOC110529879
XR_005052870.1 mRNA downstream 83997 37149323 ~ 37271103 (-) False LOC110529879
XR_005052871.1 mRNA downstream 83997 37149323 ~ 37271103 (-) False LOC110529879
XR_005052872.1 mRNA downstream 83997 37152507 ~ 37271103 (-) False LOC110529879
XM_021612533.2 mRNA upstream 63816 37425738 ~ 37456935 (-) True opn8a
XM_036985435.1 mRNA upstream 112307 37474229 ~ 37626960 (-) False LOC110530908
XM_036985432.1 mRNA upstream 115410 37477332 ~ 37626960 (-) False LOC110530908
XM_036985434.1 mRNA upstream 115410 37477332 ~ 37626960 (-) False LOC110530908
XM_036985431.1 mRNA upstream 115542 37477464 ~ 37626960 (-) False LOC110530908
TU798300 other downstream 1436925 35900623 ~ 35918175 (-) True G701618
TU798297 other downstream 1450828 35900623 ~ 35904272 (-) False G701618
TU798046 other downstream 1649787 35641355 ~ 35705313 (-) True LOC110529865
TU798044 other downstream 1667464 35641355 ~ 35687636 (-) False LOC110529865
TU800488 other upstream 127305 37489227 ~ 37492157 (-) True LOC110530908
TU801610 other upstream 675803 38037725 ~ 38038346 (-) True G704702
TU801790 other upstream 951567 38313489 ~ 38313803 (-) True G704874
TU803684 other upstream 1857722 39219644 ~ 39226313 (-) True G706683
TU804129 other upstream 2595039 39956961 ~ 39959613 (-) True slc22a16

Expression Profile