RNA id: XM_021612532.2


Basic Information

Item Value
RNA id XM_021612532.2
length 2339
RNA type mRNA
GC content 0.57
exon number 13
gene id mut
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 37385172 ~ 37424189 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTGGCTGGACAGACATACGCCTTTACAGCAACGCCACTGAGAACGCCCGTCATGCTGACCGCACAGAGGACATGTGTCGCTCTGGCTGCACGCCGACTTCTAGGAGCTCCCTGCTCCTCACACGGATTCATCAACACACGCTCACAGACGCACTCCCGACAGTTTCGTACCGCAACGCCCTGTCAGGATGAAGTGGACCTGCACCCGGAGTGGGCCAGCCTGGCCAAAAAACAACTGAAAGGGAAGAACCCAGAAGACCTGATCTGGCGCACGCCGGAGGGCCTCAACATCAAACCCGTCTACACTAAAGCAGACTCTGCAACGAAGCCAGACGAACTGCCGGGGGTCTTCCCTTACACTAGGGGGCCCTACCCCACCATGTACACGTTCAGGCCCTGGACCATCAGGCAGTATGCTGGCTTCAGCACCGTGGAGGAGAGCAACAAGTTCTACCGGGACAACATTAAAGCGGGTCAACAGGGTCTCTCGGTGGCCTTCGACCTCCCGACTCACCGCGGGTATGACTCCGACAACCCCCGTGTCCATGGCGATGTCGGAATGGCGGGGGTCGCCATAGATACCGTGGAGGACACCAAGATGCTGTTCGACGGAATCCCGCTGGAGAAGATGTCGGTTTCTATGACGATGAATGGAGCGGTGATCCCGGTGCTGGCCATGTTCATCGTGACTGGGGAGGAGCAGGGGGTGCCCAAGGAGAAGCTGACGGGAACTATCCAGAACGACATCCTGAAGGAGTTCATGGTGCGCAACACCTATATCTTCCCCCCGGAACCTTCCATGCACGCCATCGCTGATATCTTTGCCTACACATCCAAGCACATGCCCAAGTTCAACTCCATCTCCATCAGTGGTTACCATCTCCAGGAGGCCGGGGCGGACGCCATCTTGGAGGTGGCCTACACCATCGCCAACGGCCTGGAGTACTGCCGCACTGGGCTGAAAGCTGGCCTCACTATAGACGAGTTCGCCCCCAGgcTGTCATTCTTCTGGGGTATCGGTATGAACTTCTACATGGAGATTGCCAAGCTGAGGGCAGGCAGGAGGCTGTGGGCCATGCTCATTAAGGAGAAGTTCCAACCCAAGCTGGCCAAGTCTCTGCTCCTCAGGACCCACTGTCAGACCTCAGGCTGGTCCCTCACTGAACAGgacccgTATAACAACGTGGTGCGTACTGTGATCGAGGCGATGGCTGCGGTGTTCGGGGGGACCCAGTCTCTACACACCAACTCTTTTGACGAGGCTTTGGGTCTACCAACGGTGAAGAGCGCCCGCATCGCACGCAACACACAGATAATCATCCAAGAGGAGTCTGGGATACCCAAGGTCGCCGACCCCTGGGGTGGGTCACACATGATGGAGGCGCTGACCGACGATGTCTACAACACTGCCCTAAAGTTTATCAATGAGATCGAAGAGATGGGAGGCATGGCCAGAGCTGTGGCTGAAGGCATTCCTAAACTACGCATCGAGGAGTGTGCTGCTCGCAGACAGGCTCGCATCGACTCAGGTTCGGAGGTGATTGTTGGGGTGAATAAGTACCGTCTAGAGAAAGAGGAGTCCGTTGATGTGCTGGCTATCGACAACACCAACGTACGCAACAAGCAGATCGACAAACTCAAGAAGGTGAGGGAGAGTCGTGATGCTGAGGTGGCGAAGAGGTGTCTGTCGGCCATAGAGGAGTGTGCTCGTACCAGGGAGGGGAACCTGCTGGGGCTGGCTGTGGAGGCTGCTAGAGCCAGATGTTCTGTTGGGGAGATCACGGATGCCATGAAGGTTGTGTTTGGGGAACATAAAGCCAGCACCAGGATGGTGAGCGGAGCCTACCGCAGCGAGTTCGGAGAGCATGAGGAGATCTCCACAGCACACAACCGGGTGGTGGAATTTAAGAAGCATGAGGGCAGGAACCCTCGTCTGCTGGTGGCCAAGATGGGCCAGGACGGCCATGACAGGGGGGCAAAGGTCATCGCTACGGGATTCGCTGACCTGGGATTTGACGTTGACATTGGACCGCTCTTCCAGACCCCCCTGGAGGTGGCCCAGCAGGCGGTAGATGCAGACGTCCACTGTGTTGGGGTCAGCACGCTGGCCGCAGGACACAAGACCCTGGTCCCAGAGCTTATCAAGGAGCTTCGTAACCTCAACCGCCCTGACATCTTGGTCATCTGTGGAGGGGTCATCCCACCTCAGGACTATGAGTTCCTGTACCAGAGTGGTGTGTGCTGTATCTTCGGCCCCGGGACGAGAATCCCTCAGGCTTCAGTAGAGGTGATAGACAACATTGAGAAGAGCCTGGACAAGATCCGCCAGGCCATGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU799462 lncRNA upstream 325969 37058345 ~ 37059223 (+) True G702687
TU799455 lncRNA upstream 333323 37050391 ~ 37051869 (+) True G702681
TU799349 lncRNA upstream 454042 36930875 ~ 36931150 (+) True G702583
TU799343 lncRNA upstream 455263 36929316 ~ 36929929 (+) True G702582
TU799208 lncRNA upstream 605670 36778841 ~ 36779522 (+) True G702459
TU799698 lncRNA downstream 10724 37433365 ~ 37433593 (+) True G702913
TU799700 lncRNA downstream 11881 37434522 ~ 37434768 (+) True G702915
TU799701 lncRNA downstream 12237 37434878 ~ 37435084 (+) True G702916
TU799738 lncRNA downstream 71715 37494356 ~ 37500703 (+) True G702950
TU800617 lncRNA downstream 272579 37695220 ~ 37695845 (+) True G703775
XM_036985430.1 mRNA upstream 350 37365191 ~ 37384842 (+) False fkbp1b
XM_021612535.2 mRNA upstream 350 37365508 ~ 37384842 (+) True fkbp1b
XM_021612527.2 mRNA upstream 30332 37312731 ~ 37354860 (+) False mfsd2b
XM_036985436.1 mRNA downstream 39366 37462007 ~ 37474125 (+) True drc1
XM_036986868.1 mRNA downstream 229484 37652125 ~ 37733599 (+) True LOC110530909
XM_036985438.1 mRNA downstream 370367 37793008 ~ 37800489 (+) False LOC110529887
XM_036985437.1 mRNA downstream 370569 37793210 ~ 37800489 (+) False LOC110529887
XM_021612539.2 mRNA downstream 370629 37793270 ~ 37800489 (+) False LOC110529887
TU799594 other upstream 135383 37248737 ~ 37249809 (+) True G702817
TU799461 other upstream 325969 37058345 ~ 37059223 (+) False G702687
TU799161 other upstream 684453 36700438 ~ 36700739 (+) True G702415
TU797474 other upstream 1480494 35904049 ~ 35904698 (+) True G700864
TU797266 other upstream 1770526 35613164 ~ 35614666 (+) True G700685
TU800686 other downstream 348223 37770864 ~ 37771635 (+) True G703835
TU801178 other downstream 803414 38226055 ~ 38229974 (+) True G704281
TU802209 other downstream 1333230 38755871 ~ 38756305 (+) True G705273
TU802471 other downstream 1577855 39000496 ~ 39001878 (+) True adgb
TU802817 other downstream 1980307 39402948 ~ 39403296 (+) True G705853

Expression Profile