RNA id: XM_036985433.1


Basic Information

Item Value
RNA id XM_036985433.1
length 6611
RNA type mRNA
GC content 0.54
exon number 47
gene id LOC110530908
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 37474229 ~ 37626960 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTCACCTGGATGCGTGAGACCCAGCAGTCGCGAAGCATATAGCGCGGGATAAAACGAAAGCTTATGAGTAATTGGACATCCTTTCTTTCTGTCAAaggagataaagcagatgctTCATGCGGAATGGAAGGAGATTTTGTTTCACCAAAGACGCAATGAGAGGGTCTAGGTTCAGAGATCATTGAACATTTGGTTGATACGCTTATCAGCAGAATATACGAGTTTCTTGCTCTGTGAAGGaaaatactgtagttcatttttTCCTGAAGTGCTGTATTGTACCGAAGTTGACATGGCTCTTCTAGTCCACCTTAAGACGATCCGGGACCTTCGTGGAAAGGGGGACAGAATCGCCAAAGTCACATTTCGAGGTCTGTCGCTCTACACGCATGTGCTGGAAAACTGTGAGGATGAGGCCAGATTTGATGAGACGTTCCGATGGCCGATTGCCAGTAGAGTGGATGAAAATGAGATGCTGGAAGTTCAAGTGTTCAACTACAGCAAAGTCTTCACCAACAGAGTCATTGGATCCTTCAAGATGGTTCTACAGAAGGTGGCAGAGGAGGGCCAGCTAGAGGTGACAGACACACTCATCGACGACAACAACACCGCCATCAGGGCCAGTGTTACCCTATACATCAAGTACACGACGATGGATGGGACTGTGGGGGTTTGGAGTGACGGAGAATTCCTGGACATCCCGGGTGACCCGGAGGGAACGTTCCAGTTTGAGACGGACAGTCTGCTCTCCGGACACAGCCAGGGGTCAGGAGTGTCACAGGGGAGATCCATCCATGGAATTCCCACTTTTAGGAAagCGGGGAAGGGGGTATTCTCAGCCATGAAGCTCGGCAAGACCAAGAGCTCCAAGGATGACCACAAGAAAGATGAGCCAGCCATCTTGGACATGGAGGATCTGAACAGGAAGGCCATGCGtctgggaggggtggggggtctGGACCCAGACTGCATCTCCCTGGCCTCCGTCACTGCCGTCACCACCAATGTCTCCAACAAGAGATCAAAGCCTGATATCAAGATGGAGCCTAGTTCTGGGAGGCCTGTGGATTACCAGATTAGCATCACAGTCGTTGAGGCCAGGCAGCTGGTTGGCCTTAACATGGACCCTGTGGTCTGTGTGGAGATTGGGGACGACAAGAAGTACACCTCCATGAAGGAGTCCACTAACTGCCCCTACTACAATGAGTATTTTGTCTTTGACTTCCACGTCCCACCAGATGTCATGTTTGACAAGATCCTGAAGCTCTCAgtGATCCACTCTAAGAACCTGCTGCGGAGTGGCACCTTAGTTGGAACTTTCAAGCTGGATGTTGGCACAGTCTACTCCCAGCCTGAGCATCAATTCTACCACAAGTGGGCCACACTGTCTGACCCTGATGACATCACGGCCGGCTGCAAAGGTTACATCAAGTGTGACATCGCCGTGGTGGGGAAGGGGGACAACATCAAGACTCCCCACAAGGCCAACGAGACAGATGAAGACGACATAGAAGGGAACCTCCTTCTTCCGGAGGGTGTTCCCTTGGAGAGACAGTGGGCACGATTCTACGTGAAGATCTACCGCGCTGAGGGCCTTCCCAAGATGAACACCAGCATCATGGCCAACGTTAAGAAGGCCTTCATaggggagaacagagacctggtgGACCCCTACGTACAAGTGCTCTTCGCCGGACAGAGAGGGAAGACGTCGGTCCAGAAGAGTAGTTATGAGCCGATCTGGAATGAGCAGGTGGTCTTCACTGAGATGTTTCCTCCGCTCTGCAAACGCATGAAGGTCCAGATAAGAGACTCCGACAAAGTCAATGACGTCGCCATAGGAACACACTTCATTGACCTGCGAAAGATCGCCAATGATGGTGACAAAGggtTCCTGCCCACCATGGGCCCAGCCTGGGTCAACATGTATGGCTCCACCCGGCAGTACACTCTGATGGATGAGCACCAGGACTTGAATGAGGGGCTGGGGGAAGGCGTGTCCTTCAGGGCCCGCCTCCTCATCTCCGTTGCCGTGGAGATCCTGGACACCACCTCCACTGAGATTGTAAGCTCCACCGAGGTGCAGGTGGAGCCTGTCTCTAACATCTCAGAGAGTGTTACAGGGAAAATAGAGGAATTCTTCCTGTTTGGTTCCTTCCTGGAGGCCACCATGATCGACAGGAAGATCGGCGATAAGCCAATCAGCTTCGAGGTCACAATAGGCAACTACGGCAACCAGATAGATGGAGTGAGCAAGCCCTCGGCAgctaagaagaagaagaaagagggaggaggaggaggaggagaaagtgaTGAGGAGGAGTCAGAGCTGATCCAGCAGAACTCCAGTGAGGACGAGGCAGATGATGATGGGGACCTGGTGTCTGTGTCCTCCTCCCCACCCATGAAACCTGTCATAACAGACAGGAACTACTTCCACCTGCCCTACTTTGAGAAGAAGCCGTGTATCTACATCAAGAGCTGGTGGCAGGACCAAAGGAGAAGACTTTACAACTCCAACATCATGGACAAGATCGCTGACAAACTGGAGGAGGGTCTGAATGATGTGCAGGAGATCATCAAGACAGAGACAGCCTATCCAGAGCGCAGACTCAGAGGGGTGCTGGAGGAACTCAGTACTGGCTGCAATCGTTTCGTCACTTTGGCCAACAAGGACCAGAACCAGGCAGGCAGAACCAAACTGGACAAAGAGAGACTCAAGTCCTGCATGAGAGAGATGGAGAGCATGGGCCAGCAGGCCAAGCTGATTCGCTCCCAGGTGAAGAGGAACACAGTGAGAGACAAACTGAAGATGGTTCAGAACTTCCTGCACAGGCTACGTTTCCTTGCCGACGAGCCCCAGCATAGTATCCCAGACGTGTTTGTATGGATGATGAGTAGCAACAAGCGTATCGCCTACGCCCGCATCCCCTCCAAAGATATCCTCTACTCCATCGTAGACGAGGAGACAGGCAAGGACTGTGGCAAGGTCAAAGCTGTCTTCCTCAGGCTGCCTGGTAAGAAGGGATTTGGTCCAGCCGGGTGGACAGTGCAGGCTAAgatggagatgtacctgtggctGGGCCTCAACAAACAGAGGAAGGACTTCCTGTCTGGCCTGCCCAACGGCTTTGAAGAGAACAAGGCTCCCAGGACAGGCTCATGTCTGCAGTCTTTACCCCCTATCAGTCTGGTTTATAACATGAAGCAGGTATTCCAGCTGAGGGCTCACATGTACCAGGCCAGGAGTCTGTTTGCTGCAGACAGCAGTGGCCTGTCAGACCCCTTCGCCAGGGTCTTCTTCTCCACACACAGCCAGGTCACTGAGGTCCTGAGTGAGACTCTGTGCCCTACGTGGGATCAGCTGCTGGTGTTTGATGATGTTGAGCTGTTCGGGGAGGCCGGCGAGCTACGAGACGACCCACCTATCATTGTGGTAGAGGTCTACGACCAGGACACTGTGGGCAAGGCAGAGTTCATTGGTCGTACGTTTGCTAAGCCCATCACTAAGATGTGTGACGAGCACTACGGACCCCCGAGGTTCCCCCCTCAGCTAGAGTACTACCAGATCTACCGTGGTAACTCTACCGCCGGTGACCTACTGGCTGCCTTCGAGCTGCTACAGATTCCCTATGACCATGAGGAGATCAGGAGGGCTCTGATTGCTGTCCATGACTTTGCAGTTCCTCAGATTAAGATTGGGCAAGGGGGGAGGGCGGAGCTTCCTGCCATCAATGGTCCGACAGACTCAGACCGTGGACCCATCCTCCCTGTGCCAATGGGCATCAGACCTGTCCTAAGCCGTTATCGCATAGAGGTTCTGTTCTGGGGCCTGCGGGACCTGAAGAGGGTGAATTTGGCCCAGGTGGACAGACCCAGGGTGGACATAGAGTGTGCAGGGAGAGGAGTCCAGTCTGCACTCATCGTGAACTTCAAAAAGAACCCCAACTTCAGCACACTGGTCAAGTGGTTCGAAGTGGACCTGCCAGAGAACGAGCTGCTCCACCCTCCTCTTAACATCCGGGTAGTGGACTGCAGGGCGTTTGGCCGATACACCCTGGTGGGTTCCCACGCCGTCACCAGCCTACGACGCTTCATCTACAGCCCCCCAGACAAGACGCAAAACAACTGGGCCAGCGCAGCTAGACTGATGAATGGCTACATGGTCCTGACCAACGGGGGGTCCCAATCTCGCCCCTCCTCCCCTTACTCCCGCACCCTGCCCCGCACCCTCTCTCACCCCACAGGTGATGTCATAGTCAACTTGGATGCCAACCCCTCAGTCAGGAAAATGGACACGGTGGTGAAGTTAGATGCTTCGTCTGATGCAGTAATTAAAGTTGATGTGaatgaggaggagaaagaagagaagaagaagaagaagaagaagaaaaagaagggagaggtggaggaggacgaTGAGACCGACGAGAGAATGCTGGACTGGTGGTCCAAATATTTTGCTTCCATAGAGACACTGATGGAGATCCTCAGGGCCCAGGAGGCAGCTCTGGCTGAGGCcgaggagagggaggagcaggAGATAGCAGCAGAGGGAGCAGATATCAAACCTGACGACCTCCCTGTAAAAGGCTCCAAGGGGAAGGAGAAGAGCCGAGACAAGAGCAGGAACAAGGACAAGAAGAAGAGTCACCAtgcaggagaggggacagagaaacGCCCCAGCAAACCCAAAGTGAACGAGCTGCTGGTGTACAACAAGGAGTTGGAGGCAGAGTATGATAACTTTGAGGACTGGCTCCATACCTTCAACTTGTACAGAGGGAAGGCAGGGGACGACGATGAAGCAGCCCTGGATGACGACAGGATCGTGGGCAGATTCAAGGGCTCCATGTGCATGTACAAGCTGCCTCTGTCTGAGGAGATCACCCGGGAGGCGGGCTTCGACCCTAACATGGGCATGTTCCAGAGCATTCCACACAATGACCCAATCAATGTGCTGGTGCGAGTCTTCGTGGTCAGGGCCACAGACCTCCATCCTGCTGATGTCAATGGGAAAGCGGACCCCTACGTCGTCATCAAACTGGGCAAGTCAGAGCTGAAGGATAAAGAGAACTATATCTCCAAACAGCTCAACCCTGTCTTTGGCAAGGCGTTTGACATGGAGGCTACGTTCCCCATGGAGTCCATGTTGACCGTGTCAGTGTACGACTGGGATCTGGTGGGCACTGATGACCTCATCGGGGAGACCAAGATCGACCTGGAGAACCGCTACTATAGCAAACACAGAGCTACCTGTGGCATCGCTAACAACTACTCTGTGCATGGTTACAACATGTGGCGTGACCCCATGAAGCCAAGCCAGATCCTGGCCAAGCTCTGTAAGGAGGGCAAGCTGGACGGACCCCATTACGGCCCTGGGGGAAGGGTCAAGGTCGCCAACCGTATCTTCATGGGTGCCACAGAGATCGAGGATGAGACTGgtctaaagaagcagaCAGATGAGCACCTGGCGCTGACGGTGCTGAAGCACTGGGAGGAGATCCCTAGGGTGGGCTGTAAACTCATCCCAGAACACGTCGAGACAAGACCCCTGTTCCACCCTGAGAAACCTGGCATCGAACAGGGGCGGATTGAGATGTGGGTAGACATGTTCCCCATGGACATGCCAGCACCTGGACCCGCCATTGACATATCACCACGGAAACCAAAGAAATATGAGCTCAGGGTGGTTATATGGAATACAGACGAAGTAATACTCGAGGACGATGATTACTTCACTGGGGAAAAGTCCAGTGACATATTTGTCAGGGGGTGGCTGAAAGGGCAACAGGAGGACAAACAGGACACAGATGTCCACTACCACTCTCTGACAGGCGAGGGGAATTTCAACTGGCGCTTCGTGTTCCCCTTTGACTACCTGATGGCCGAGGAGAAGATTGTCATCTCTAAGAAGGAGTCCATGTTCTCCTGGGATGAGACAGAGTACAAGATCCCTGCACGCCTCACCCTGCAGGTCTGGGACGCTGACCACTTCTCCGCTGATGACTTCCTAGGTGCAATAGAGCTGGACCTGAACAGATTTCCCCGCGGGGCGAAGACAGCCAAGCAGTGTTCCATAGGCATGGTCCAGAATGAGGCTGAGCTGCCCTGCATTTCCATCTTCAAACAGAAGAGAGTCAAGGGCTGGTGGCCATTCGTGGCCCGCGACGAAAACGACGAGATGGAActcacgGGTAAAGTGGAGGCGGAGCTTCATCTGATGTCGGCAGAGGAAGCGGAGAAAAGTCCTGTTGGTCTGGGACGCAATGAGCCTGACCCTCTGGAGAAACCAAATCGCCCAGACACCAGTCTCATGTGGTTTGTGAACCCTCTGAAGTCCATCCGCTACTTCATCTGGCACAACTACCGCTGGCTGATCCTCAAGGCcctgggcctgctgctgctgctgctcctgctcgGCCTCTTCCTCTACTCCTTCCCTGGCTACCTGGTCAAGAAGATGCTGGGGGCCTGAGAGAACGTCGACCCACCAGGGCCACCGTCGGCCGGACACCACATTCCTGTGGTTCCTGAGCCCGCTGAAGGCTATCCGCTACCTGGTGTGTAACCGCTACAAGTGGCTTATCATCAAGATTGTTGTGGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU800487 lncRNA downstream 172 37474752 ~ 37477292 (-) True G703648
TU800482 lncRNA downstream 4721 37470891 ~ 37472743 (-) False G703647
TU800483 lncRNA downstream 4721 37470891 ~ 37472743 (-) True G703647
TU800457 lncRNA downstream 34851 37442267 ~ 37442613 (-) True G703627
TU800378 lncRNA downstream 47641 37428107 ~ 37429823 (-) True G703548
TU800895 lncRNA upstream 123642 37750602 ~ 37750921 (-) True G704025
TU800898 lncRNA upstream 126507 37753467 ~ 37753666 (-) True G704028
TU800908 lncRNA upstream 133307 37760267 ~ 37760785 (-) True G704035
TU800913 lncRNA upstream 135387 37762347 ~ 37762806 (-) True G704036
TU800914 lncRNA upstream 144315 37771275 ~ 37771522 (-) True G704037
XM_021612533.2 mRNA downstream 20529 37425738 ~ 37456935 (-) True opn8a
XM_021612526.2 mRNA downstream 115542 37355100 ~ 37361922 (-) False LOC110529880
XR_005052873.1 mRNA downstream 206204 37149323 ~ 37271260 (-) False LOC110529879
XR_005052871.1 mRNA downstream 206361 37149323 ~ 37271103 (-) False LOC110529879
XM_021612540.2 mRNA upstream 155214 37782174 ~ 37792728 (-) True sod2
XM_021612541.2 mRNA upstream 190912 37817872 ~ 37851843 (-) False acbd3
XM_021612543.2 mRNA upstream 190912 37817872 ~ 37851844 (-) False acbd3
XM_021612544.2 mRNA upstream 190912 37817872 ~ 37851844 (-) False acbd3
XM_021612545.2 mRNA upstream 190912 37817872 ~ 37851844 (-) True acbd3
TU800348 other downstream 115871 37355096 ~ 37361593 (-) True LOC110529880
TU798300 other downstream 1559289 35900623 ~ 35918175 (-) True G701618
TU798297 other downstream 1573192 35900623 ~ 35904272 (-) False G701618
TU798046 other downstream 1772151 35641355 ~ 35705313 (-) True LOC110529865
TU798045 other downstream 1789999 35641355 ~ 35687465 (-) False LOC110529865
TU801610 other upstream 410765 38037725 ~ 38038346 (-) True G704702
TU801790 other upstream 686529 38313489 ~ 38313803 (-) True G704874
TU803684 other upstream 1592684 39219644 ~ 39226313 (-) True G706683
TU804129 other upstream 2330001 39956961 ~ 39959613 (-) True slc22a16
TU806574 other upstream 5092811 42719771 ~ 42720699 (-) True G709272

Expression Profile