RNA id: XM_036985438.1


Basic Information

Item Value
RNA id XM_036985438.1
length 1280
RNA type mRNA
GC content 0.59
exon number 8
gene id LOC110529887
representative False

Chromosome Information

Item Value
chromosome id NC_048572.1
NCBI id CM023226.2
chromosome length 91622588
location 37793008 ~ 37801035 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTCACGTTTAGCAAATTTGACAGAGCTCAGAATGACAAATGAGGAACCTCTTCCAAAGAAGGTTCGCCTCAGTGAATCTGACATGAAGACCCTGACCAGAGAGGAACTGTGTGTGAGGTGGAACCAACATGAAGCCTACGTTCAGATCCTGGAGGCAAAATATGCTGATCTGAATTCGAACGATGTGACTGGGCTGAAGGAGTCTGAGGAGAAgctgaagcagcagcagcaggaggcgTCACGCAGGGAGAACATCCTAGTCATGCGGCTCGCAACCAAGGAGCAGGAAATGCAAGAGTGTACAACCCAGATCCAGTACCTCAAGCAAGTCCAGCAACCCAGTGCCGCCCAATTGCGGTCGTCAATGGTAGACCCGGCCATCAACTTATTTTTCCTCAAAATGAAGGGAGAACTGGAACAGACTAAAGACAAACTGGAGCAGGCCCAAAATGAACTGAGTGCCTGGAAATTTACACCAGATAGCCAGACGGGGAAGAAGCTAATGGCCAAGTGCCGGATGCTGATCCAGGagaaccaggagctggggaggcAGCTGTCCCAGGGACGTATCGCCCAGTTGGAGGCAGAGCTGGCCCTGCAGAAGAAGTACAGCGAGGAGCTCAAGAGCAGCCAAGATGAGTTGAACGATTTCATCATCCAGCTGGATGAGGAAGTAGAGGGCATGCAGAGCACCATCCTGGTCCTCCAGCAGCAGCTCAGGGAGACCCGTCAGCAGCTCTCCCAGAACCCAGCTCAAGCTGCCTCTGCCGGGGCAGGCCCCAGCAGGACTTCACCCTCCGCCGAGCCCCCCAGCCAGCCCGAGCAGCCCTCCGCCCAAGCCGGGAAAGACTGCGGAAGGGTCTCCAACGGCCCAAGCAACGGCAGCTCGTCCTCCCAGAGGGGTGCGGCGACCACCCCCAGCCTGTACCGCGAGGTCAGCAGCACAGAGGAAGACTTTCCCCCGTCCCCCATGGTCTCCAGCCCCGGTGAGGGCGAGACGAAACTCTCCAACCACTCAGAGGAGGCAGCGGGTGGCCAGACTGGTGGCAGTGCAGGGGGTACAGCAGCAGGGGGGTTCGGGAGCCAGCTGAGCACAGGGTATGAGAGCGTGGACTCCCCGACGGGCAGCGAAACGTCCCTGACGCAGCACTCGAACGACACAGACTCCAACACCGACCCCCACGAAGACAAGTCTGCCCTGGTCGTCAAGGGGAACAGGACTGCGGGGTCGCGGCAGGCTCAGAACGGCCTGAGCGCGAGCAGTGGCACAGTTTTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU800677 lncRNA upstream 312 37782204 ~ 37792696 (+) True G703826
TU800696 lncRNA upstream 13778 37779012 ~ 37779230 (+) True G703841
TU800694 lncRNA upstream 15370 37777439 ~ 37777638 (+) True G703839
TU800688 lncRNA upstream 17740 37774961 ~ 37775268 (+) True G703837
TU800682 lncRNA upstream 27534 37765063 ~ 37765474 (+) True G703831
TU800716 lncRNA downstream 17418 37817907 ~ 37821054 (+) True G703860
TU801017 lncRNA downstream 115285 37915774 ~ 37916003 (+) True G704127
TU801041 lncRNA downstream 133007 37933496 ~ 37933713 (+) True G704149
TU801042 lncRNA downstream 133303 37933792 ~ 37934038 (+) True G704150
TU801043 lncRNA downstream 133627 37934116 ~ 37934383 (+) True G704151
XM_036986868.1 mRNA upstream 59409 37652125 ~ 37733599 (+) True LOC110530909
XM_036985436.1 mRNA upstream 318883 37462007 ~ 37474125 (+) True drc1
XM_021612529.2 mRNA upstream 368819 37386038 ~ 37424189 (+) False mut
XM_021612530.2 mRNA upstream 370367 37385172 ~ 37422641 (+) False mut
XM_036985439.1 mRNA downstream 293342 38093831 ~ 38139085 (+) False LOC110529891
XM_036985450.1 mRNA downstream 663046 38463535 ~ 38467848 (+) True LOC118965514
XM_036985449.1 mRNA downstream 671704 38472193 ~ 38636353 (+) False LOC110530912
XM_036985443.1 mRNA downstream 671705 38472194 ~ 38641598 (+) False LOC110530912
XM_036985446.1 mRNA downstream 671705 38472194 ~ 38641598 (+) False LOC110530912
TU800686 other upstream 21373 37770864 ~ 37771635 (+) True G703835
TU799594 other upstream 543199 37248737 ~ 37249809 (+) True G702817
TU799461 other upstream 733785 37058345 ~ 37059223 (+) False G702687
TU799161 other upstream 1092269 36700438 ~ 36700739 (+) True G702415
TU797474 other upstream 1888310 35904049 ~ 35904698 (+) True G700864
TU801178 other downstream 425566 38226055 ~ 38229974 (+) True G704281
TU802209 other downstream 955382 38755871 ~ 38756305 (+) True G705273
TU802471 other downstream 1200007 39000496 ~ 39001878 (+) True adgb
TU802817 other downstream 1602459 39402948 ~ 39403296 (+) True G705853
TU803252 other downstream 2297417 40097906 ~ 40102291 (+) True G706274

Expression Profile